Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G1980 Cannabis sativa HOM05D004123 ORTHO05D004768 1.2e-136 490.0 274 100.0
Prupe.1G311900 Prunus persica HOM05D004123 ORTHO05D004768 5.2e-55 218.8 277 54.2
MELO3C003021.2 Cucumis melo HOM05D004123 ORTHO05D004768 4.9e-53 212.2 253 54.2
CsaV3_5G023110 Cucumis sativus L. HOM05D004123 ORTHO05D004768 1.1e-52 211.1 252 54.4
FvH4_4g27300 Fragaria vesca HOM05D004123 ORTHO05D004768 3.2e-52 209.5 290 50.7
CiPaw.15G085900 Carya illinoinensis HOM05D004123 ORTHO05D004768 4.6e-51 205.7 275 49.5
QL01p041642 Quercus lobata HOM05D004123 ORTHO05D004768 7.8e-51 204.9 274 53.6
Sed0009095 Sechium edule HOM05D004123 ORTHO05D004768 2.3e-50 203.4 246 53.7
Thecc.02G229500 Theobroma cacao HOM05D004123 ORTHO05D004768 3.3e-49 199.5 246 52.4
FAN12G0145 Fragaria x ananassa HOM05D004123 ORTHO05D004768 3.1e-47 193.0 292 47.6
FAN12G0921 Fragaria x ananassa HOM05D004123 ORTHO05D004768 3.1e-47 193.0 292 47.6
CiPaw.16G065300 Carya illinoinensis HOM05D004123 ORTHO05D004768 5.3e-47 192.2 279 49.5
FAN07G2244 Fragaria x ananassa HOM05D004123 ORTHO05D004768 2.0e-46 190.3 298 46.0
Gohir.D04G137875 Gossypium hirsutum HOM05D004123 ORTHO05D004768 2.6e-46 189.9 258 51.2
Gorai.012G122600 Gossypium raimondii HOM05D004123 ORTHO05D004768 2.6e-46 189.9 258 51.2
Manes.06G067400 Manihot esculenta HOM05D004123 ORTHO05D004768 2.6e-46 189.9 272 49.3
Potri.008G121200 Populus trichocarpa HOM05D004123 ORTHO05D004768 2.6e-46 189.9 268 50.7
Gohir.A04G098200 Gossypium hirsutum HOM05D004123 ORTHO05D004768 3.4e-46 189.5 258 51.2
Gorai.005G191500 Gossypium raimondii HOM05D004123 ORTHO05D004768 2.9e-45 186.4 247 52.6
Gohir.D02G170500 Gossypium hirsutum HOM05D004123 ORTHO05D004768 3.8e-45 186.0 251 51.8
Haze_17490 Corylus avellana HOM05D004123 ORTHO05D004768 4.9e-45 185.7 280 47.9
Gohir.A03G147300 Gossypium hirsutum HOM05D004123 ORTHO05D004768 4.9e-45 185.7 251 53.0
Duzib251G0145 Durio zibethinus HOM05D004123 ORTHO05D004768 8.4e-45 184.9 257 48.6
Phvul.007G027700 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 2.4e-44 183.3 251 49.8
Duzib248G0829 Durio zibethinus HOM05D004123 ORTHO05D004768 3.2e-44 183.0 249 48.2
MD13G1040900 Malus domestica HOM05D004123 ORTHO05D004768 5.4e-44 182.2 224 52.2
MD16G1042200 Malus domestica HOM05D004123 ORTHO05D004768 7.1e-44 181.8 203 54.2
ClCG03G009600 Citrullus lanatus HOM05D004123 ORTHO05D004768 1.0e-42 177.9 250 51.6
Duzib268G1624 Durio zibethinus HOM05D004123 ORTHO05D004768 1.3e-42 177.6 268 47.4
Medtr1g110710 Medicago truncatula HOM05D004123 ORTHO05D004768 6.7e-42 175.3 257 52.5
Psat6g227440 Pisum sativum HOM05D004123 ORTHO05D004768 1.9e-41 173.7 254 52.8
Cpa.g.sc350.1 Carica papaya HOM05D004123 ORTHO05D004768 2.5e-41 173.3 247 48.6
Nn3g17856 Nelumbo nucifera HOM05D004123 ORTHO05D004768 2.5e-41 173.3 265 50.2
Rhsim09G0107600 Rhododendron simsii HOM05D004123 ORTHO05D004768 3.3e-41 172.9 246 49.6
Sabra08G0091900 Salix brachista HOM05D004123 ORTHO05D004768 3.3e-41 172.9 289 46.0
Sed0004295 Sechium edule HOM05D004123 ORTHO05D004768 5.6e-41 172.2 220 56.4
Lalb_Chr21g0308891 Lupinus albus HOM05D004123 ORTHO05D004768 7.4e-41 171.8 209 59.3
Manes.14G103000 Manihot esculenta HOM05D004123 ORTHO05D004768 1.6e-40 170.6 267 45.7
GSVIVG01011890001 Vitis vinifera HOM05D004123 ORTHO05D004768 3.7e-40 169.5 229 49.8
Lj5g0020149 Lotus japonicus HOM05D004123 ORTHO05D004768 8.1e-40 168.3 271 48.3
MSTRG.844 Avicennia marina HOM05D004123 ORTHO05D004768 1.8e-39 167.2 257 47.9
TPR.G18823 Trifolium pratense HOM05D004123 ORTHO05D004768 3.1e-39 166.4 251 49.4
TAR622G0492 Trochodendron aralioides HOM05D004123 ORTHO05D004768 4.0e-39 166.0 250 51.2
Ciclev10018307m.g Citrus clementina HOM05D004123 ORTHO05D004768 5.3e-39 165.6 267 50.2
Glyma.10G273800 Glycine max HOM05D004123 ORTHO05D004768 2.0e-38 163.7 278 45.0
MSTRG.13535 Avicennia marina HOM05D004123 ORTHO05D004768 3.4e-38 162.9 248 48.8
TAR629G2125 Trochodendron aralioides HOM05D004946 ORTHO05D006101 4.5e-38 162.5 244 51.6
TWI31G0276 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 5.8e-38 162.2 283 44.9
Lj5g0023256 Lotus japonicus HOM05D004123 ORTHO05D004768 1.7e-37 160.6 254 48.8
FAN22G2099 Fragaria x ananassa HOM05D004123 ORTHO05D004768 1.4e-36 157.5 293 45.7
Lj2g0014688 Lotus japonicus HOM05D004123 ORTHO05D004768 1.4e-36 157.5 244 45.5
Oeu043592.1 Olea europaea HOM05D004123 ORTHO05D004768 1.9e-36 157.1 240 48.3
vmacro10561 Vaccinium macrocarpon HOM05D004123 ORTHO05D004768 1.9e-36 157.1 203 50.7
Lj6C757T7 Lonicera japonica HOM05D004123 ORTHO05D004768 4.2e-36 156.0 258 52.7
Lsat_1_v5_gn_8_40481 Lactuca sativa HOM05D004123 ORTHO05D004768 1.2e-35 154.5 258 43.4
Lsat_1_v5_gn_3_59041 Lactuca sativa HOM05D004123 ORTHO05D004768 2.7e-35 153.3 240 43.8
Solyc05g009380.4 Solanum lycopersicum HOM05D004123 ORTHO05D004768 7.9e-35 151.8 246 44.7
Aqoxy3G00286 Aquilegia oxysepala HOM05D004123 ORTHO05D004768 3.9e-34 149.4 288 45.1
PGR119G1213 Punica granatum HOM05D004123 ORTHO05D004768 1.5e-33 147.5 244 44.3
TAR374G0469 Trochodendron aralioides HOM05D004123 ORTHO05D004768 1.9e-33 147.1 244 42.6
Glyma.20G116200 Glycine max HOM05D004123 ORTHO05D004768 2.8e-32 143.3 162 54.3
Oeu034240.1 Olea europaea HOM05D004123 ORTHO05D004768 8.2e-32 141.7 284 40.1
SalBow8G0349 Salvia bowleyana HOM05D004123 ORTHO05D004768 8.2e-32 141.7 237 47.7
Eucgr.G02316 Eucalyptus grandis HOM05D004123 ORTHO05D004768 1.8e-31 140.6 249 47.4
Nn4g23857 Nelumbo nucifera HOM05D004123 ORTHO05D004768 4.0e-31 139.4 253 43.1
SHI16201 Sapria himalayana HOM05D004123 ORTHO05D004768 6.9e-31 138.7 243 41.6
unitig_747.g21201 Utricularia gibba HOM05D004123 ORTHO05D004768 9.0e-31 138.3 234 45.3
Cc11_g10070 Coffea canephora HOM05D004123 ORTHO05D004768 1.5e-30 137.5 213 46.0
CAN.G610.78 Capsicum annuum HOM05D004123 ORTHO05D004768 2.0e-30 137.1 210 51.0
HanXRQChr09g0252701 Helianthus annuus HOM05D004123 ORTHO05D004768 2.0e-30 137.1 195 47.2
TWI75G1885 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 2.6e-30 136.7 247 43.3
PSO063G6205 Papaver somniferum HOM05D004123 ORTHO05D004768 7.6e-30 135.2 305 39.7
HanXRQChr08g0213911 Helianthus annuus HOM05D004123 ORTHO05D004768 1.3e-29 134.4 234 41.9
Sp5g23550 Schrenkiella parvula HOM05D004123 ORTHO05D004768 1.3e-29 134.4 246 40.2
Actinidia14896 Actinidia chinensis HOM05D004123 ORTHO05D004768 1.7e-29 134.0 198 51.0
PSO782G4509 Papaver somniferum HOM05D004123 ORTHO05D004768 2.9e-29 133.3 299 39.8
AT1G68480 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 6.5e-29 132.1 241 42.3
Phvul.003G031000 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 6.5e-29 132.1 251 45.0
Thhalv10019033m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 8.4e-29 131.7 257 39.3
unitig_8.g3254 Utricularia gibba HOM05D004123 ORTHO05D004768 1.4e-28 131.0 248 43.1
BcaC08g46276 Brassica carinata HOM05D004123 ORTHO05D004768 2.5e-28 130.2 249 39.8
Migut.E00347 Erythranthe guttata HOM05D004123 ORTHO05D004768 2.5e-28 130.2 164 57.3
Carub.0002s1499 Capsella rubella HOM05D004123 ORTHO05D004768 3.2e-28 129.8 240 40.8
AL2G27340 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 9.3e-28 128.3 242 41.3
C06p41480 Brassica napus HOM05D004123 ORTHO05D004768 2.1e-27 127.1 245 39.6
BolC6t39275H Brassica oleracea HOM05D004123 ORTHO05D004768 2.1e-27 127.1 245 39.6
CDE12G0443 Ceratophyllum demersum HOM05D004123 ORTHO05D004768 2.1e-27 127.1 238 38.2
BcaB03g15826 Brassica carinata HOM05D004123 ORTHO05D004768 2.7e-27 126.7 249 39.8
Lalb_Chr10g0100051 Lupinus albus HOM05D004123 ORTHO05D004768 7.9e-27 125.2 211 45.5
Cfa018590 Carpinus fangiana HOM05D004123 ORTHO05D004768 1.0e-26 124.8 199 48.2
DCAR_026735 Daucus carota HOM05D004123 ORTHO05D004768 1.0e-26 124.8 250 42.0
Sc04g0006360 Simmondsia chinensis HOM05D004123 ORTHO05D004768 1.0e-26 124.8 240 44.2
CARHR061260 Cardamine hirsuta HOM05D004123 ORTHO05D004768 1.3e-26 124.4 234 42.7
unitig_22.g6557 Utricularia gibba HOM05D004123 ORTHO05D004768 1.3e-26 124.4 253 40.7
A02p15050 Brassica napus HOM05D004123 ORTHO05D004768 3.0e-26 123.2 249 39.4
A07p34880 Brassica napus HOM05D004123 ORTHO05D004768 3.0e-26 123.2 245 39.2
RcHm_v2.0_Chr4g0435091 Rosa chinensis HOM05D004123 ORTHO05D004768 2.5e-25 120.2 189 46.6
ATR1125G037 Amborella trichopoda HOM05D004123 ORTHO05D004768 4.3e-25 119.4 212 41.5
Lsat_1_v5_gn_8_41281 Lactuca sativa HOM05D004123 ORTHO05D004768 4.8e-24 115.9 210 40.5
VMungo1215G3079 Vigna mungo HOM05D004123 ORTHO05D004768 6.3e-24 115.5 255 43.5
BcaB05g24386 Brassica carinata HOM05D004123 ORTHO05D004768 8.2e-24 115.2 103 61.2
TPR.G971 Trifolium pratense HOM05D004123 ORTHO05D004768 1.1e-23 114.8 103 68.0
Os01g0129200 Oryza sativa ssp. japonica HOM05D004123 ORTHO05D004768 1.4e-23 114.4 245 39.2
Ah.03g137600 Amaranthus hybridus HOM05D004123 ORTHO05D004768 2.4e-23 113.6 247 38.9
THA.LOC104805254 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 5.3e-23 112.5 157 46.5
THA.LOC104821930 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 5.3e-23 112.5 240 43.3
Thhalv10009343m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 9.0e-23 111.7 242 37.2
BolC2t08567H Brassica oleracea HOM05D004123 ORTHO05D004768 2.0e-22 110.5 251 38.2
Zm00001eb335100 Zea mays HOM05D004123 ORTHO05D004768 2.0e-22 110.5 236 36.4
Potri.010G124200 Populus trichocarpa HOM05D004123 ORTHO05D004768 2.6e-22 110.2 193 44.0
C02p24750 Brassica napus HOM05D004123 ORTHO05D004768 4.5e-22 109.4 249 41.0
AL1G25160 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 1.9e-20 104.0 147 48.3
Carub.0001s1311 Capsella rubella HOM05D004123 ORTHO05D004768 4.2e-20 102.8 150 49.3
VMungo0720G2589 Vigna mungo HOM05D004123 ORTHO05D004768 5.5e-20 102.4 253 37.9
HPP92_004806 Vanilla planifolia HOM05D004123 ORTHO05D004768 1.2e-19 101.3 116 51.7
HPP92_004807 Vanilla planifolia HOM05D004123 ORTHO05D004768 1.2e-19 101.3 116 51.7
AT1G13400 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 2.1e-19 100.5 237 36.3
Aa31sc366G10 Aethionema arabicum HOM05D004123 ORTHO05D004768 2.7e-19 100.1 264 35.2
Psat6g226920 Pisum sativum HOM05D004123 ORTHO05D004768 2.7e-19 100.1 262 35.1
Aa31LG1G1560 Aethionema arabicum HOM05D004123 ORTHO05D004768 3.6e-19 99.8 208 36.5
CARHR013770 Cardamine hirsuta HOM05D004123 ORTHO05D004768 4.6e-19 99.4 155 47.7
Nitab4.5_0000791g0080 Nicotiana tabacum HOM05D004123 ORTHO05D004768 4.6e-19 99.4 163 41.1
Nitab4.5_0003373g0030 Nicotiana tabacum HOM05D004123 ORTHO05D004768 3.9e-18 96.3 163 38.7
Sp1g11890 Schrenkiella parvula HOM05D004123 ORTHO05D004768 6.7e-18 95.5 242 37.2
CSS0039482 Camellia sinensis var. sinensis HOM05D004123 ORTHO05D004768 4.3e-17 92.8 81 58.0
Ca_03055_v3 Cicer arietinum L. HOM05D004123 ORTHO05D004768 3.7e-16 89.7 174 47.1
Lalb_Chr02g0145931 Lupinus albus HOM05D004123 ORTHO05D004768 6.3e-16 89.0 176 49.4
BcaB03g13142 Brassica carinata HOM05D004123 ORTHO05D004768 1.4e-15 87.8 237 39.2
C08p16160 Brassica napus HOM05D004123 ORTHO05D004768 1.4e-15 87.8 242 36.0
Sabra10G0094200 Salix brachista HOM05D004123 ORTHO05D004768 3.1e-15 86.7 88 54.5
BolC8t49237H Brassica oleracea HOM05D004123 ORTHO05D004768 6.9e-15 85.5 248 35.5
A08p32310 Brassica napus HOM05D004123 ORTHO05D004768 9.1e-15 85.1 236 34.7
BraA08t35155Z Brassica rapa HOM05D004123 ORTHO05D004768 9.1e-15 85.1 236 34.7
Dinv31634 Davidia involucrata HOM05D004123 ORTHO05D004768 2.6e-14 83.6 161 46.0
Sopen05g005180 Solanum pennellii HOM05D004123 ORTHO05D004768 1.3e-13 81.3 180 39.4
BcaC05g25048 Brassica carinata HOM05D004123 ORTHO05D004768 6.5e-13 79.0 99 48.5
Dinv21080 Davidia involucrata HOM05D004123 ORTHO05D004768 8.5e-13 78.6 250 34.8
arahy.Tifrunner.gnm1.ann1.U1U6XH Arachis hypogaea HOM05D004123 ORTHO05D004768 1.2e-11 74.7 240 38.3
SMO266G0088 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 3.0e-10 70.1 43 74.4
SMO288G0011 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 3.0e-10 70.1 43 74.4
AagrBONN_evm.TU.Sc2ySwM_228.1523 Anthoceros agrestis HOM05D004123 ORTHO05D004768 2.0e-09 67.4 54 61.1
arahy.Tifrunner.gnm1.ann1.A2D7P4 Arachis hypogaea HOM05D004123 ORTHO05D004768 2.0e-09 67.4 158 37.3
Pp3c20_10790 Physcomitrium patens HOM05D004123 ORTHO05D004768 2.0e-09 67.4 103 39.8
Pp3c23_2190 Physcomitrium patens HOM05D004123 ORTHO05D004768 9.7e-09 65.1 51 56.9
Pp3c23_800 Physcomitrium patens HOM05D059517 ORTHO05D004768 9.7e-09 65.1 68 52.9
Pp3c23_960 Physcomitrium patens HOM05D004123 ORTHO05D004768 1.3e-08 64.7 54 53.7
SalBow8G0756 Salvia bowleyana HOM05D004123 ORTHO05D004768 1.7e-08 64.3 239 36.4
Pp3c3_21050 Physcomitrium patens HOM05D004123 ORTHO05D004768 2.8e-08 63.5 48 58.3
COL.COLO4_03992 Corchorus olitorius HOM05D004123 ORTHO05D004768 1.1e-07 61.6 250 31.2
Peaxi162Scf00382g00826 Petunia axillaris HOM05D004123 ORTHO05D004768 1.1e-07 61.6 138 37.0
Medtr1g110740 Medicago truncatula HOM05D004123 ORTHO05D004768 5.3e-07 59.3 163 35.0
THA.LOC104805006 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 5.3e-07 59.3 239 32.2
ECA233G4891 Erigeron canadensis HOM05D004123 ORTHO05D004768 6.9e-07 58.9 82 46.3
ECA233G2451 Erigeron canadensis HOM05D001250 ORTHO05D000627 2.6e-06 57.0 107 36.4
Zm00001eb125440 Zea mays HOM05D004123 ORTHO05D004768 3.4e-06 56.6 168 31.5


User provided reference genes

Program Settings