Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G1896 Cannabis sativa HOM05D006885 ORTHO05D008606 2.0e-36 155.2 78 100.0
Ciclev10033198m.g Citrus clementina HOM05D006885 ORTHO05D008606 2.5e-26 121.7 64 90.6
Cfa008736 Carpinus fangiana HOM05D000120 ORTHO05D000068 7.2e-26 120.2 63 90.5
CiPaw.05G104600 Carya illinoinensis HOM05D006885 ORTHO05D008606 7.2e-26 120.2 63 90.5
CiPaw.06G106900 Carya illinoinensis HOM05D006885 ORTHO05D008606 1.2e-25 119.4 63 88.9
Gohir.A04G101300 Gossypium hirsutum HOM05D006885 ORTHO05D008606 1.2e-25 119.4 64 89.1
Gohir.D04G140400 Gossypium hirsutum HOM05D006885 ORTHO05D008606 1.2e-25 119.4 64 89.1
Gorai.012G125400 Gossypium raimondii HOM05D006885 ORTHO05D008606 1.2e-25 119.4 64 89.1
Hma1.2p1_0459F.1_g157320 Hydrangea macrophylla HOM05D006885 ORTHO05D008606 2.1e-25 118.6 75 81.3
ClCG06G001860 Citrullus lanatus HOM05D006885 ORTHO05D008606 2.7e-25 118.2 78 76.9
FvH4_4g23120 Fragaria vesca HOM05D006885 ORTHO05D008606 2.7e-25 118.2 76 78.9
FAN07G1762 Fragaria x ananassa HOM05D006885 ORTHO05D008606 2.7e-25 118.2 76 78.9
FAN12G2334 Fragaria x ananassa HOM05D006885 ORTHO05D008606 2.7e-25 118.2 76 78.9
FAN17G2783 Fragaria x ananassa HOM05D006885 ORTHO05D008606 2.7e-25 118.2 76 78.9
Manes.11G080000 Manihot esculenta HOM05D006885 ORTHO05D008606 2.7e-25 118.2 63 87.3
RcHm_v2.0_Chr4g0429451 Rosa chinensis HOM05D006885 ORTHO05D008606 2.7e-25 118.2 76 78.9
Atru.chr11.2397 Acer truncatum HOM05D006885 ORTHO05D008606 3.6e-25 117.9 63 88.9
Sed0025765 Sechium edule HOM05D006885 ORTHO05D008606 1.0e-24 116.3 63 84.1
Manes.04G090052 Manihot esculenta HOM05D006885 ORTHO05D008606 2.3e-24 115.2 63 85.7
Aqoxy5G03235 Aquilegia oxysepala HOM05D006885 ORTHO05D008606 3.0e-24 114.8 63 85.7
Ca_06520_v3 Cicer arietinum L. HOM05D006885 ORTHO05D008606 3.0e-24 114.8 70 80.0
Dinv33305 Davidia involucrata HOM05D006885 ORTHO05D008606 3.0e-24 114.8 68 83.8
ECA232G0525 Erigeron canadensis HOM05D006885 ORTHO05D008606 3.0e-24 114.8 59 89.8
Eucgr.B03538 Eucalyptus grandis HOM05D006885 ORTHO05D008606 3.0e-24 114.8 60 90.0
Peaxi162Scf00962g00024 Petunia axillaris HOM05D006885 ORTHO05D008606 3.0e-24 114.8 62 88.7
Prupe.1G220300 Prunus persica HOM05D006885 ORTHO05D008606 3.0e-24 114.8 73 80.8
Sabra16G0207500 Salix brachista HOM05D006885 ORTHO05D008606 3.0e-24 114.8 72 81.9
Duzib052G0936 Durio zibethinus HOM05D006885 ORTHO05D008606 4.0e-24 114.4 70 81.4
Potri.001G325000 Populus trichocarpa HOM05D006885 ORTHO05D008606 4.0e-24 114.4 60 90.0
Actinidia19564 Actinidia chinensis HOM05D006885 ORTHO05D008606 5.2e-24 114.0 61 86.9
Oeu011334.1 Olea europaea HOM05D006885 ORTHO05D008606 5.2e-24 114.0 59 91.5
TAR629G2182 Trochodendron aralioides HOM05D006885 ORTHO05D008606 5.2e-24 114.0 61 86.9
CAN.G1264.4 Capsicum annuum HOM05D006885 ORTHO05D008606 6.8e-24 113.6 62 90.3
PSO017G7113 Papaver somniferum HOM05D006885 ORTHO05D008606 6.8e-24 113.6 63 85.7
CsaV3_6G007910 Cucumis sativus L. HOM05D006885 ORTHO05D008606 8.8e-24 113.2 78 74.4
Migut.K00992 Erythranthe guttata HOM05D006885 ORTHO05D008606 8.8e-24 113.2 75 77.3
Lsat_1_v5_gn_4_1780 Lactuca sativa HOM05D006885 ORTHO05D008606 8.8e-24 113.2 67 80.6
MD13G1125100 Malus domestica HOM05D006885 ORTHO05D008606 8.8e-24 113.2 58 91.4
TPR.G15605 Trifolium pratense HOM05D006885 ORTHO05D008606 8.8e-24 113.2 78 75.6
AUR62005687 Chenopodium quinoa HOM05D006885 ORTHO05D008606 1.5e-23 112.5 59 86.4
AUR62028871 Chenopodium quinoa HOM05D006885 ORTHO05D008606 1.5e-23 112.5 59 86.4
LjContig00312_ERROPOS870357g0004846 Lotus japonicus HOM05D006885 ORTHO05D008606 1.5e-23 112.5 70 77.1
Nitab4.5_0000913g0010 Nicotiana tabacum HOM05D006885 ORTHO05D008606 1.5e-23 112.5 58 91.4
MSTRG.471 Avicennia marina HOM05D006885 ORTHO05D008606 2.0e-23 112.1 57 93.0
Oeu044483.1 Olea europaea HOM05D006885 ORTHO05D008606 2.0e-23 112.1 57 93.0
PGSC0003DMG400011888 Solanum tuberosum HOM05D006885 ORTHO05D008606 2.0e-23 112.1 62 87.1
MD16G1125900 Malus domestica HOM05D006885 ORTHO05D008606 3.4e-23 111.3 79 75.9
Nn2g15930 Nelumbo nucifera HOM05D006885 ORTHO05D008606 3.4e-23 111.3 61 85.2
TWI75G1759 Tripterygium wilfordii HOM05D006885 ORTHO05D008606 3.4e-23 111.3 77 72.7
unitig_26.g10421 Utricularia gibba HOM05D006885 ORTHO05D008606 4.4e-23 110.9 62 85.5
PGR119G0226 Punica granatum HOM05D006885 ORTHO05D008606 5.7e-23 110.5 58 89.7
Duzib248G1150 Durio zibethinus HOM05D006885 ORTHO05D008606 7.5e-23 110.2 70 78.6
Lj6A834T26 Lonicera japonica HOM05D006885 ORTHO05D008606 7.5e-23 110.2 57 89.5
Sopen01g005380 Solanum pennellii HOM05D006885 ORTHO05D008606 9.8e-23 109.8 62 83.9
Cc11_g17420 Coffea canephora HOM05D006885 ORTHO05D008606 2.2e-22 108.6 58 89.7
Carub.0001s2598 Capsella rubella HOM05D006885 ORTHO05D008606 2.8e-22 108.2 72 75.0
Phvul.008G000900 Phaseolus vulgaris HOM05D006885 ORTHO05D008606 2.8e-22 108.2 64 82.8
Psat0s1880g0200 Pisum sativum HOM05D006885 ORTHO05D008606 2.8e-22 108.2 60 85.0
Thecc.02G198000 Theobroma cacao HOM05D006885 ORTHO05D008606 4.9e-22 107.5 73 79.5
CARHR027030 Cardamine hirsuta HOM05D006885 ORTHO05D008606 8.3e-22 106.7 54 90.7
Dinv25633 Davidia involucrata HOM05D006885 ORTHO05D008606 8.3e-22 106.7 61 82.0
Thhalv10009236m.g Eutrema salsugineum HOM05D006885 ORTHO05D008606 1.1e-21 106.3 60 83.3
Medtr3g074700 Medicago truncatula HOM05D006885 ORTHO05D008606 1.1e-21 106.3 76 71.1
Glyma.08G361800 Glycine max HOM05D006885 ORTHO05D008606 1.4e-21 105.9 57 87.7
THA.LOC104825479 Tarenaya hassleriana HOM05D006885 ORTHO05D008606 1.4e-21 105.9 62 83.9
DCAR_024641 Daucus carota HOM05D006885 ORTHO05D008606 3.1e-21 104.8 66 74.2
Glyma.18G300000 Glycine max HOM05D006885 ORTHO05D008606 3.1e-21 104.8 54 90.7
AL1G40850 Arabidopsis lyrata HOM05D006885 ORTHO05D008606 4.1e-21 104.4 72 72.2
Aa31LG7G9990 Aethionema arabicum HOM05D006885 ORTHO05D008606 5.4e-21 104.0 74 70.3
AT1G27435 Arabidopsis thaliana HOM05D006885 ORTHO05D008606 7.0e-21 103.6 72 72.2
Sp1g23670 Schrenkiella parvula HOM05D006885 ORTHO05D008606 2.7e-20 101.7 60 81.7
BcaB03g13983 Brassica carinata HOM05D006885 ORTHO05D008606 3.5e-20 101.3 58 82.8
BcaC06g35293 Brassica carinata HOM05D006885 ORTHO05D008606 3.5e-20 101.3 58 82.8
C07p17740 Brassica napus HOM05D006885 ORTHO05D008606 3.5e-20 101.3 58 82.8
BolC7t42280H Brassica oleracea HOM05D006885 ORTHO05D008606 3.5e-20 101.3 58 82.8
BraA07t28960Z Brassica rapa HOM05D006885 ORTHO05D008606 4.5e-20 100.9 65 73.8
A07p11750 Brassica napus HOM05D006885 ORTHO05D008606 5.9e-20 100.5 52 88.5
BcaC01g06952 Brassica carinata HOM05D006885 ORTHO05D008606 7.7e-20 100.1 58 81.0
A08p26290 Brassica napus HOM05D006885 ORTHO05D008606 7.7e-20 100.1 58 81.0
BolC3t19669H Brassica oleracea HOM05D006885 ORTHO05D008606 7.7e-20 100.1 58 81.0
BraA08t34580Z Brassica rapa HOM05D006885 ORTHO05D008606 7.7e-20 100.1 58 81.0
Haze_11752 Corylus avellana HOM05D006885 ORTHO05D008606 7.7e-20 100.1 96 58.3
Lalb_Chr10g0091171 Lupinus albus HOM05D006885 ORTHO05D008606 1.0e-19 99.8 55 85.5
HPP92_021686 Vanilla planifolia HOM05D006885 ORTHO05D008606 1.7e-19 99.0 61 73.8
BcaC01g01613 Brassica carinata HOM05D006885 ORTHO05D008606 2.3e-19 98.6 78 67.9
SalBow2G1383 Salvia bowleyana HOM05D006885 ORTHO05D008606 2.3e-19 98.6 73 68.5
GSVIVG01000942001 Vitis vinifera HOM05D006885 ORTHO05D008606 2.9e-19 98.2 53 88.7
EL10Ac6g13573 Beta vulgaris HOM05D006885 ORTHO05D008606 3.8e-19 97.8 52 88.5
C03p73770 Brassica napus HOM05D006885 ORTHO05D008606 3.8e-19 97.8 78 67.9
SGA_v2.0_scaffold9G04792 Striga asiatica HOM05D006885 ORTHO05D008606 3.8e-19 97.8 99 54.5
HPP92_021628 Vanilla planifolia HOM05D006885 ORTHO05D008606 1.5e-18 95.9 61 72.1
CDE05G1244 Ceratophyllum demersum HOM05D006885 ORTHO05D008606 9.5e-18 93.2 68 67.6
SHI04153 Sapria himalayana HOM05D006885 ORTHO05D008606 1.6e-17 92.4 61 75.4
MELO3C035240.2 Cucumis melo HOM05D006885 ORTHO05D008606 3.6e-17 91.3 49 85.7
Dinv09126 Davidia involucrata HOM05D006885 ORTHO05D008606 3.6e-17 91.3 49 87.8
QL03p050754 Quercus lobata HOM05D006885 ORTHO05D008606 3.6e-17 91.3 44 95.5
SalBow1G0427 Salvia bowleyana HOM05D006885 ORTHO05D008606 4.7e-17 90.9 61 72.1
CSS0038255 Camellia sinensis var. sinensis HOM05D006885 ORTHO05D008606 1.8e-16 89.0 44 93.2
Zm00001eb133070 Zea mays HOM05D006885 ORTHO05D008606 2.3e-16 88.6 72 59.7
Ah.03g135790 Amaranthus hybridus HOM05D006885 ORTHO05D008606 3.0e-16 88.2 44 90.9
ATR0582G111 Amborella trichopoda HOM05D006885 ORTHO05D008606 3.0e-16 88.2 61 75.4
Sc11g0000250 Simmondsia chinensis HOM05D006885 ORTHO05D008606 5.2e-16 87.4 42 95.2
Zm00001eb408880 Zea mays HOM05D006885 ORTHO05D008606 5.2e-16 87.4 63 63.5
Hund25491 Selenicereus undatus HOM05D006885 ORTHO05D008606 3.4e-15 84.7 70 62.9
HanXRQChr03g0067371 Helianthus annuus HOM05D006885 ORTHO05D008606 1.7e-14 82.4 44 84.1
Gorai.001G210600 Gossypium raimondii HOM05D006885 ORTHO05D008606 3.2e-13 78.2 53 73.6
Gohir.D07G189020 Gossypium hirsutum HOM05D006885 ORTHO05D008606 9.2e-13 76.6 53 71.7
MBI12_g28748_MAGBIO Magnolia biondii HOM05D006885 ORTHO05D008606 9.2e-13 76.6 54 68.5
CSS0039361 Camellia sinensis var. sinensis HOM05D006885 ORTHO05D008606 3.5e-12 74.7 37 94.6
Gohir.A06G101502 Gossypium hirsutum HOM05D006885 ORTHO05D008606 4.3e-10 67.8 46 67.4
Pp3c6_10000 Physcomitrium patens HOM05D006885 ORTHO05D008606 1.2e-09 66.2 61 59.0
TPR.G7690 Trifolium pratense HOM05D006885 ORTHO05D008606 6.2e-09 63.9 30 90.0
Gohir.D02G113400 Gossypium hirsutum HOM05D006885 ORTHO05D008606 8.0e-09 63.5 34 82.4
Gorai.005G128300 Gossypium raimondii HOM05D006885 ORTHO05D008606 8.0e-09 63.5 34 82.4
AagrBONN_evm.TU.Sc2ySwM_362.2152 Anthoceros agrestis HOM05D006885 ORTHO05D008606 5.8e-07 57.4 67 49.3
Mapoly0027s0032 Marchantia polymorpha HOM05D006885 ORTHO05D008606 1.3e-06 56.2 61 54.1


User provided reference genes

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