Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G1893 Cannabis sativa HOM05D004153 ORTHO05D004678 4.3e-101 371.3 187 100.0
RcHm_v2.0_Chr6g0293581 Rosa chinensis HOM05D004153 ORTHO05D004678 1.2e-50 203.8 194 57.2
Duzib138G0244 Durio zibethinus HOM05D004153 ORTHO05D004678 1.0e-49 200.7 197 56.3
COL.COLO4_23373 Corchorus olitorius HOM05D004153 ORTHO05D004678 1.3e-49 200.3 194 55.7
FAN15G0276 Fragaria x ananassa HOM05D004153 ORTHO05D004678 2.5e-48 196.1 190 55.3
FAN15G2246 Fragaria x ananassa HOM05D000802 ORTHO05D001074 4.2e-48 195.3 187 55.1
FvH4_2g25400 Fragaria vesca HOM05D004153 ORTHO05D004678 9.4e-48 194.1 190 55.8
FAN24G2766 Fragaria x ananassa HOM05D004153 ORTHO05D004678 9.4e-48 194.1 190 55.8
Prupe.8G258500 Prunus persica HOM05D004153 ORTHO05D004678 6.1e-47 191.4 190 55.8
Potri.002G206100 Populus trichocarpa HOM05D004153 ORTHO05D004678 1.8e-46 189.9 198 52.0
FAN27G1399 Fragaria x ananassa HOM05D004153 ORTHO05D004678 6.8e-46 188.0 184 53.3
MD03G1285300 Malus domestica HOM05D004153 ORTHO05D004678 6.8e-46 188.0 188 53.2
Gorai.008G011200 Gossypium raimondii HOM05D004153 ORTHO05D004678 4.4e-45 185.3 191 51.8
Potri.014G131400 Populus trichocarpa HOM05D004153 ORTHO05D004678 4.4e-45 185.3 200 52.0
QL12p027168 Quercus lobata HOM05D004153 ORTHO05D004678 1.3e-44 183.7 188 53.2
Gohir.D12G011200 Gossypium hirsutum HOM05D004153 ORTHO05D004678 1.7e-44 183.3 191 51.3
Manes.04G056100 Manihot esculenta HOM05D004153 ORTHO05D004678 2.2e-44 183.0 162 56.8
FAN20G2301 Fragaria x ananassa HOM05D004153 ORTHO05D004678 3.7e-44 182.2 190 53.7
Gohir.A12G010800 Gossypium hirsutum HOM05D004153 ORTHO05D004678 3.7e-44 182.2 191 51.8
Atru.chr5.1180 Acer truncatum HOM05D004153 ORTHO05D004678 4.9e-44 181.8 163 56.4
CiPaw.07G106600 Carya illinoinensis HOM05D004153 ORTHO05D004678 3.1e-43 179.1 189 51.9
Sabra02G0153200 Salix brachista HOM05D004153 ORTHO05D004678 3.5e-42 175.6 198 49.5
TWI23G0022 Tripterygium wilfordii HOM05D004153 ORTHO05D004678 7.7e-42 174.5 197 48.2
Cc01_g20660 Coffea canephora HOM05D004153 ORTHO05D004678 2.5e-40 169.5 192 50.0
Lj1g0005892 Lotus japonicus HOM05D004153 ORTHO05D004678 5.6e-40 168.3 188 49.5
DCAR_002817 Daucus carota HOM05D004153 ORTHO05D004678 7.2e-40 167.9 159 52.8
Ciclev10007035m.g Citrus clementina HOM05D004153 ORTHO05D004678 9.5e-40 167.5 164 51.2
Glyma.03G213300 Glycine max HOM05D004153 ORTHO05D004678 9.5e-40 167.5 189 48.1
Thecc.01G297300 Theobroma cacao HOM05D004153 ORTHO05D004678 9.5e-40 167.5 197 49.2
Manes.05G063900 Manihot esculenta HOM05D004153 ORTHO05D004678 1.6e-39 166.8 191 46.6
Solyc09g074910.1 Solanum lycopersicum HOM05D004153 ORTHO05D004678 2.1e-39 166.4 190 48.4
CAN.G339.31 Capsicum annuum HOM05D004153 ORTHO05D004678 2.8e-39 166.0 195 49.2
Aqoxy2G02983 Aquilegia oxysepala HOM05D004153 ORTHO05D004678 3.6e-39 165.6 190 49.5
Sopen09g029730 Solanum pennellii HOM05D004153 ORTHO05D004678 6.1e-39 164.9 190 47.9
Oeu030970.1 Olea europaea HOM05D004153 ORTHO05D004678 8.0e-39 164.5 198 45.5
Haze_04898 Corylus avellana HOM05D004153 ORTHO05D004678 1.0e-38 164.1 193 50.8
Ciclev10022120m.g Citrus clementina HOM05D004153 ORTHO05D004678 1.4e-38 163.7 197 49.2
Peaxi162Scf00067g00254 Petunia axillaris HOM05D004153 ORTHO05D004678 4.0e-38 162.2 190 48.4
CANSAT78G0904 Cannabis sativa HOM05D004153 ORTHO05D004678 6.8e-38 161.4 190 46.3
Lj3P816T18 Lonicera japonica HOM05D004153 ORTHO05D004678 6.8e-38 161.4 155 51.0
PGR119G1654 Punica granatum HOM05D004153 ORTHO05D004678 8.9e-38 161.0 193 49.2
PGR119G2063 Punica granatum HOM05D004153 ORTHO05D004678 8.9e-38 161.0 193 49.2
VMungo1383G3271 Vigna mungo HOM05D004153 ORTHO05D004678 8.9e-38 161.0 190 46.3
Cpa.g.sc9.210 Carica papaya HOM05D004153 ORTHO05D004678 1.5e-37 160.2 161 47.2
CSS0027100 Camellia sinensis var. sinensis HOM05D004153 ORTHO05D004678 3.4e-37 159.1 156 48.7
arahy.Tifrunner.gnm1.ann1.3INE6D Arachis hypogaea HOM05D004153 ORTHO05D004678 7.5e-37 157.9 150 53.3
THA.LOC104802169 Tarenaya hassleriana HOM05D004153 ORTHO05D004678 7.5e-37 157.9 182 47.3
Lj1C0T8 Lonicera japonica HOM05D004153 ORTHO05D004678 9.8e-37 157.5 163 52.8
PSO017G2667 Papaver somniferum HOM05D004153 ORTHO05D004678 1.3e-36 157.1 199 46.7
PSO675G8366 Papaver somniferum HOM05D004153 ORTHO05D004678 1.7e-36 156.8 198 47.0
RcHm_v2.0_Chr4g0422241 Rosa chinensis HOM05D004153 ORTHO05D004678 1.7e-36 156.8 193 44.6
Migut.D00197 Erythranthe guttata HOM05D004153 ORTHO05D004678 2.9e-36 156.0 191 44.5
PGSC0003DMG400035200 Solanum tuberosum HOM05D004153 ORTHO05D004678 2.9e-36 156.0 185 48.1
Hma1.2p1_0209F.1_g088580 Hydrangea macrophylla HOM05D004153 ORTHO05D004678 3.7e-36 155.6 156 51.3
AUR62008617 Chenopodium quinoa HOM05D004153 ORTHO05D004678 8.3e-36 154.5 185 42.7
Nitab4.5_0000619g0070 Nicotiana tabacum HOM05D004153 ORTHO05D004678 8.3e-36 154.5 195 45.1
Nitab4.5_0003901g0020 Nicotiana tabacum HOM05D004153 ORTHO05D004678 8.3e-36 154.5 198 44.9
AUR62033157 Chenopodium quinoa HOM05D004153 ORTHO05D004678 1.8e-35 153.3 185 42.2
AUR62033169 Chenopodium quinoa HOM05D004153 ORTHO05D004678 1.8e-35 153.3 185 42.2
Atru.chr4.2837 Acer truncatum HOM05D004153 ORTHO05D004678 2.4e-35 152.9 170 44.7
AL4G47340 Arabidopsis lyrata HOM05D004153 ORTHO05D004678 2.4e-35 152.9 195 44.1
Carub.0004s3048 Capsella rubella HOM05D004153 ORTHO05D004678 3.2e-35 152.5 195 43.6
TAR365G1014 Trochodendron aralioides HOM05D004153 ORTHO05D004678 7.0e-35 151.4 140 52.1
Ah.08g213200 Amaranthus hybridus HOM05D004153 ORTHO05D004678 1.2e-34 150.6 188 42.0
AT2G47770 Arabidopsis thaliana HOM05D004153 ORTHO05D004678 1.2e-34 150.6 195 43.1
Phvul.001G205900 Phaseolus vulgaris HOM05D004153 ORTHO05D004678 1.6e-34 150.2 190 43.2
Cfa005949 Carpinus fangiana HOM05D004153 ORTHO05D004678 2.7e-34 149.4 134 56.0
Lalb_Chr18g0047121 Lupinus albus HOM05D004153 ORTHO05D004678 3.5e-34 149.1 207 43.5
Psat3g022920 Pisum sativum HOM05D004153 ORTHO05D004678 3.5e-34 149.1 171 48.5
A04p35060 Brassica napus HOM05D004153 ORTHO05D004678 4.6e-34 148.7 194 42.8
Haze_01203 Corylus avellana HOM05D004153 ORTHO05D004678 4.6e-34 148.7 160 46.9
Prupe.1G136800 Prunus persica HOM05D004153 ORTHO05D004678 4.6e-34 148.7 146 50.7
BraA04t18942Z Brassica rapa HOM05D004153 ORTHO05D004678 5.9e-34 148.3 194 42.8
Lalb_Chr15g0078571 Lupinus albus HOM05D004153 ORTHO05D004678 1.0e-33 147.5 170 47.6
Nn4g25841 Nelumbo nucifera HOM05D004153 ORTHO05D004678 1.0e-33 147.5 192 45.8
CARHR143140 Cardamine hirsuta HOM05D004153 ORTHO05D004678 2.3e-33 146.4 196 41.8
C04p72970 Brassica napus HOM05D004153 ORTHO05D004678 3.0e-33 146.0 182 42.9
Lj3P819T20 Lonicera japonica HOM05D004153 ORTHO05D004678 3.0e-33 146.0 142 50.0
SGA_v2.0_scaffold2G01404 Striga asiatica HOM05D004153 ORTHO05D004678 3.0e-33 146.0 188 42.0
BolC4t28778H Brassica oleracea HOM05D004153 ORTHO05D004678 3.9e-33 145.6 193 42.5
Lsat_1_v5_gn_5_190540 Lactuca sativa HOM05D004153 ORTHO05D004678 3.9e-33 145.6 156 46.2
Aa31LG1G29110 Aethionema arabicum HOM05D004153 ORTHO05D004678 5.0e-33 145.2 198 40.9
SalBow3G0249 Salvia bowleyana HOM05D004153 ORTHO05D004678 5.0e-33 145.2 160 46.2
HanXRQChr10g0284631 Helianthus annuus HOM05D004153 ORTHO05D004678 6.6e-33 144.8 159 45.3
TPR.G13834 Trifolium pratense HOM05D004153 ORTHO05D004678 6.6e-33 144.8 158 47.5
BcaC02g06991 Brassica carinata HOM05D004153 ORTHO05D004678 1.1e-32 144.1 182 42.3
EL10Ac6g15659 Beta vulgaris HOM05D004153 ORTHO05D004678 1.5e-32 143.7 199 38.7
TWI53G1241 Tripterygium wilfordii HOM05D004153 ORTHO05D004678 1.5e-32 143.7 158 45.6
unitig_0.g1178 Utricularia gibba HOM05D004153 ORTHO05D004678 2.5e-32 142.9 187 41.2
Lj6g0000547 Lotus japonicus HOM05D004153 ORTHO05D004678 3.3e-32 142.5 162 45.7
Sp4g29700 Schrenkiella parvula HOM05D004153 ORTHO05D004678 7.3e-32 141.4 194 40.7
Thhalv10001647m.g Eutrema salsugineum HOM05D004153 ORTHO05D004678 9.5e-32 141.0 193 41.5
Medtr7g108650 Medicago truncatula HOM05D004153 ORTHO05D004678 9.5e-32 141.0 195 44.6
ClCG09G006030 Citrullus lanatus HOM05D004153 ORTHO05D004678 2.1e-31 139.8 196 44.9
MBI18_g21824_MAGBIO Magnolia biondii HOM05D004153 ORTHO05D004678 3.6e-31 139.0 185 42.7
FAN07G0961 Fragaria x ananassa HOM05D004153 ORTHO05D004678 4.7e-31 138.7 183 42.6
Phvul.009G248000 Phaseolus vulgaris HOM05D004153 ORTHO05D004678 4.7e-31 138.7 161 44.7
Duzib052G0234 Durio zibethinus HOM05D004153 ORTHO05D004678 8.0e-31 137.9 167 43.7
Glyma.15G147800 Glycine max HOM05D004153 ORTHO05D004678 8.0e-31 137.9 162 43.8
Thecc.04G284700 Theobroma cacao HOM05D004153 ORTHO05D004678 8.0e-31 137.9 163 45.4
BcaB06g29494 Brassica carinata HOM05D004153 ORTHO05D004678 1.0e-30 137.5 194 40.2
BcaB06g29496 Brassica carinata HOM05D004153 ORTHO05D004678 1.0e-30 137.5 150 44.7
BcaB06g29497 Brassica carinata HOM05D004153 ORTHO05D004678 1.0e-30 137.5 194 40.2
Glyma.09G044900 Glycine max HOM05D004153 ORTHO05D004678 2.3e-30 136.3 162 44.4
PGR031G1230 Punica granatum HOM05D004153 ORTHO05D004678 3.1e-30 136.0 173 44.5
HanXRQChr01g0001291 Helianthus annuus HOM05D004153 ORTHO05D004678 6.8e-30 134.8 164 45.7
Potri.010G025200 Populus trichocarpa HOM05D004153 ORTHO05D004678 6.8e-30 134.8 163 44.8
VMungo1309G0390 Vigna mungo HOM05D004153 ORTHO05D004678 6.8e-30 134.8 158 43.7
Psat1g153880 Pisum sativum HOM05D004153 ORTHO05D004678 8.9e-30 134.4 158 44.9
Lsat_1_v5_gn_9_1141 Lactuca sativa HOM05D004153 ORTHO05D004678 1.2e-29 134.0 161 44.1
Eucgr.B01312 Eucalyptus grandis HOM05D004153 ORTHO05D004678 1.5e-29 133.7 158 40.5
Lalb_Chr18g0051691 Lupinus albus HOM05D004153 ORTHO05D004678 2.6e-29 132.9 162 44.4
Nn5g27910 Nelumbo nucifera HOM05D004153 ORTHO05D004678 5.8e-29 131.7 185 37.3
Sed0018454 Sechium edule HOM05D004153 ORTHO05D004678 5.8e-29 131.7 163 41.7
C04p00110 Brassica napus HOM05D004153 ORTHO05D004678 9.8e-29 131.0 188 39.9
EL10Ac3g06596 Beta vulgaris HOM05D004153 ORTHO05D004678 1.3e-28 130.6 162 39.5
MD11G1304700 Malus domestica HOM05D004153 ORTHO05D004678 1.7e-28 130.2 101 59.4
Sc13g0003480 Simmondsia chinensis HOM05D004153 ORTHO05D004678 6.4e-28 128.3 157 42.7
BolC4t21658H Brassica oleracea HOM05D004153 ORTHO05D004678 8.3e-28 127.9 188 39.4
Sed0026977 Sechium edule HOM05D004153 ORTHO05D004678 1.1e-27 127.5 188 42.0
Gohir.D10G170400 Gossypium hirsutum HOM05D004153 ORTHO05D004678 1.9e-27 126.7 159 41.5
Gohir.A10G164100 Gossypium hirsutum HOM05D004153 ORTHO05D004678 2.4e-27 126.3 159 41.5
BcaC02g12543 Brassica carinata HOM05D004153 ORTHO05D004678 4.1e-27 125.6 188 40.4
TWI73G1192 Tripterygium wilfordii HOM05D004153 ORTHO05D004678 4.1e-27 125.6 145 43.4
MELO3C006663.2 Cucumis melo HOM05D004153 ORTHO05D004678 7.0e-27 124.8 163 41.1
Gorai.011G190200 Gossypium raimondii HOM05D004153 ORTHO05D004678 7.0e-27 124.8 159 40.9
CsaV3_3G014620 Cucumis sativus L. HOM05D004153 ORTHO05D004678 3.5e-26 122.5 158 40.5
ATR0796G004 Amborella trichopoda HOM05D004153 ORTHO05D004678 3.9e-25 119.0 177 36.2
Rhsim04G0221600 Rhododendron simsii HOM05D004153 ORTHO05D004678 3.9e-25 119.0 154 45.5
HPP92_016940 Vanilla planifolia HOM05D004153 ORTHO05D004678 8.6e-25 117.9 184 38.0
MELO3C016017.2 Cucumis melo HOM05D004153 ORTHO05D004678 3.3e-24 115.9 193 40.4
Rhsim01G0283900 Rhododendron simsii HOM05D004153 ORTHO05D004678 3.3e-24 115.9 180 38.3
Sed0010104 Sechium edule HOM05D004153 ORTHO05D004678 5.6e-24 115.2 167 39.5
Medtr2g436790 Medicago truncatula HOM05D004153 ORTHO05D004678 1.6e-23 113.6 158 39.9
BraA05t19015Z Brassica rapa HOM05D004153 ORTHO05D004678 2.1e-23 113.2 191 37.7
A05p00190 Brassica napus HOM05D004153 ORTHO05D004678 1.1e-22 110.9 191 37.2
Manes.03G195100 Manihot esculenta HOM05D004153 ORTHO05D004678 1.4e-22 110.5 170 36.5
Actinidia24837 Actinidia chinensis HOM05D004153 ORTHO05D004678 2.6e-21 106.3 110 46.4
Lj1C32T8 Lonicera japonica HOM05D004153 ORTHO05D004678 1.7e-20 103.6 186 39.2
CsaV3_7G029110 Cucumis sativus L. HOM05D004153 ORTHO05D004678 2.9e-20 102.8 117 45.3
BcaB02g08747 Brassica carinata HOM05D004153 ORTHO05D004678 8.3e-20 101.3 188 36.7
Ca_01937_v3 Cicer arietinum L. HOM05D000639 ORTHO05D004019 1.1e-19 100.9 110 45.5
CDE02G0764 Ceratophyllum demersum HOM05D004153 ORTHO05D004678 3.5e-18 95.9 153 39.2
Sabra10G0013900 Salix brachista HOM05D004153 ORTHO05D004678 7.8e-18 94.7 131 42.7
AagrBONN_evm.TU.Sc2ySwM_362.296 Anthoceros agrestis HOM05D004153 ORTHO05D004678 5.1e-17 92.0 194 33.5
SEGI_18828 Sequoiadendron giganteum HOM05D004153 ORTHO05D004678 5.1e-17 92.0 172 33.1
Actinidia21057 Actinidia chinensis HOM05D004153 ORTHO05D004678 1.5e-13 80.5 110 44.5
SMO115G0169 Selaginella moellendorffii HOM05D004153 ORTHO05D004678 3.4e-13 79.3 126 37.3
ECA248G0131 Erigeron canadensis HOM05D004153 ORTHO05D004678 5.8e-13 78.6 101 47.5
CBR_g30074 Chara braunii HOM05D004153 ORTHO05D004678 9.9e-13 77.8 144 31.2
Pp3c24_14170 Physcomitrium patens HOM05D004153 ORTHO05D004678 2.2e-12 76.6 154 35.1
Mapoly0050s0023 Marchantia polymorpha HOM05D004153 ORTHO05D004678 6.4e-12 75.1 190 30.5
Dinv19716 Davidia involucrata HOM05D004153 ORTHO05D004678 1.9e-11 73.6 186 34.9
Pp3c10_6760 Physcomitrium patens HOM05D004153 ORTHO05D004678 7.1e-11 71.6 190 28.9
Os05g0151200 Oryza sativa ssp. japonica HOM05D004153 ORTHO05D004678 9.2e-11 71.2 159 30.2
Zm00001eb354150 Zea mays HOM05D004153 ORTHO05D004678 1.2e-10 70.9 108 36.1
Pp3c2_17540 Physcomitrium patens HOM05D004153 ORTHO05D004678 7.8e-10 68.2 190 27.4
Pp3c26_2060 Physcomitrium patens HOM05D004153 ORTHO05D004678 1.7e-09 67.0 144 31.9
Rhsim07G0194500 Rhododendron simsii HOM05D035787 ORTHO05D004678 3.0e-09 66.2 172 32.6
Pp3c4_22190 Physcomitrium patens HOM05D004153 ORTHO05D004678 8.6e-09 64.7 143 31.5
Rhsim07G0178900 Rhododendron simsii HOM05D035787 ORTHO05D004678 1.1e-08 64.3 158 34.2
RhsimUnG0080000 Rhododendron simsii HOM05D035787 ORTHO05D004678 1.1e-08 64.3 158 34.2
SMO340G0010 Selaginella moellendorffii HOM05D004153 ORTHO05D004678 9.6e-08 61.2 118 35.6
AagrBONN_evm.TU.Sc2ySwM_117.3397 Anthoceros agrestis HOM05D004153 ORTHO05D004678 2.1e-07 60.1 135 30.4
BcaB01g03159 Brassica carinata HOM05D004153 ORTHO05D004678 1.8e-06 57.0 152 30.9


User provided reference genes

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