Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G1822 Cannabis sativa HOM05D005857 ORTHO05D007193 4.4e-39 164.1 79 100.0
CiPaw.06G177300 Carya illinoinensis HOM05D005857 ORTHO05D007193 7.1e-29 130.2 79 82.3
QL02p103650 Quercus lobata HOM05D005857 ORTHO05D007193 1.7e-27 125.6 74 83.8
Potri.004G229900 Populus trichocarpa HOM05D005857 ORTHO05D007193 3.9e-27 124.4 66 87.9
Manes.14G164233 Manihot esculenta HOM05D005857 ORTHO05D007193 1.5e-26 122.5 74 79.7
SalBow1G1563 Salvia bowleyana HOM05D005857 ORTHO05D007193 3.3e-26 121.3 74 78.4
PGR042G3007 Punica granatum HOM05D005857 ORTHO05D007193 7.3e-26 120.2 74 79.7
Sed0006374 Sechium edule HOM05D005857 ORTHO05D007193 3.6e-25 117.9 68 76.5
Thecc.06G020800 Theobroma cacao HOM05D005857 ORTHO05D007193 4.7e-25 117.5 68 79.4
Manes.06G013700 Manihot esculenta HOM05D005857 ORTHO05D007193 6.2e-25 117.1 74 75.7
CsaV3_5G027560 Cucumis sativus L. HOM05D005857 ORTHO05D007193 1.1e-24 116.3 79 73.4
COL.COLO4_31107 Corchorus olitorius HOM05D005857 ORTHO05D007193 1.8e-24 115.5 61 83.6
TWI23G0165 Tripterygium wilfordii HOM05D005857 ORTHO05D007193 1.8e-24 115.5 74 75.7
Cpa.g.sc34.126 Carica papaya HOM05D005857 ORTHO05D007193 2.4e-24 115.2 66 78.8
TWI59G0768 Tripterygium wilfordii HOM05D005857 ORTHO05D007193 3.1e-24 114.8 74 75.7
Migut.B00707 Erythranthe guttata HOM05D005857 ORTHO05D007193 4.0e-24 114.4 63 79.4
Gohir.A05G160000 Gossypium hirsutum HOM05D005857 ORTHO05D007193 5.2e-24 114.0 71 73.2
Gohir.D05G162700 Gossypium hirsutum HOM05D005857 ORTHO05D007193 5.2e-24 114.0 71 73.2
Gorai.009G167700 Gossypium raimondii HOM05D005857 ORTHO05D007193 5.2e-24 114.0 71 73.2
CSS0043387 Camellia sinensis var. sinensis HOM05D005857 ORTHO05D007193 6.9e-24 113.6 59 84.7
CiPaw.05G001000 Carya illinoinensis HOM05D005857 ORTHO05D007193 6.9e-24 113.6 79 70.9
Duzib133G0295 Durio zibethinus HOM05D005857 ORTHO05D007193 6.9e-24 113.6 71 73.2
SGA_v2.0_scaffold100G29556 Striga asiatica HOM05D001195 ORTHO05D001138 6.9e-24 113.6 74 74.3
MD08G1249300 Malus domestica HOM05D005857 ORTHO05D007193 1.2e-23 112.8 62 82.3
Oeu010607.1 Olea europaea HOM05D005857 ORTHO05D007193 1.2e-23 112.8 72 68.1
PSO210G5758 Papaver somniferum HOM05D005857 ORTHO05D007193 1.2e-23 112.8 65 80.0
CSS0006636 Camellia sinensis var. sinensis HOM05D005857 ORTHO05D007193 2.0e-23 112.1 59 83.1
Cfa004425 Carpinus fangiana HOM05D005857 ORTHO05D007193 2.0e-23 112.1 63 82.5
Haze_09965 Corylus avellana HOM05D005857 ORTHO05D007193 2.0e-23 112.1 63 82.5
FvH4_5g27520 Fragaria vesca HOM05D005857 ORTHO05D007193 2.0e-23 112.1 74 75.7
PSO447G0367 Papaver somniferum HOM05D005857 ORTHO05D007193 2.0e-23 112.1 65 78.5
MD15G1444100 Malus domestica HOM05D005857 ORTHO05D007193 2.6e-23 111.7 82 69.5
RcHm_v2.0_Chr7g0218891 Rosa chinensis HOM05D005857 ORTHO05D007193 2.6e-23 111.7 79 69.6
Lsat_1_v5_gn_9_83180 Lactuca sativa HOM05D005857 ORTHO05D007193 3.4e-23 111.3 75 74.7
Oeu000158.1 Olea europaea HOM05D005857 ORTHO05D007193 3.4e-23 111.3 60 80.0
AL1G26340 Arabidopsis lyrata HOM05D005857 ORTHO05D007193 5.8e-23 110.5 69 73.9
AT1G14450 Arabidopsis thaliana HOM05D005857 ORTHO05D007193 5.8e-23 110.5 69 73.9
Prupe.1G586500 Prunus persica HOM05D005857 ORTHO05D007193 5.8e-23 110.5 80 70.0
Atru.chr6.134 Acer truncatum HOM05D005857 ORTHO05D007193 1.3e-22 109.4 72 73.6
Atru.chr6.187 Acer truncatum HOM05D005857 ORTHO05D007193 1.3e-22 109.4 72 73.6
DCAR_001733 Daucus carota HOM05D005857 ORTHO05D007193 1.3e-22 109.4 74 68.9
Nitab4.5_0000521g0060 Nicotiana tabacum HOM05D005857 ORTHO05D007193 2.2e-22 108.6 73 71.2
Sc03g0005520 Simmondsia chinensis HOM05D005857 ORTHO05D007193 2.2e-22 108.6 64 79.7
vmacro01623 Vaccinium macrocarpon HOM05D005857 ORTHO05D007193 2.2e-22 108.6 59 78.0
Nitab4.5_0006159g0060 Nicotiana tabacum HOM05D005857 ORTHO05D007193 2.9e-22 108.2 73 69.9
Sp1g12820 Schrenkiella parvula HOM05D005857 ORTHO05D007193 3.8e-22 107.8 70 70.0
Aa31LG2G7600 Aethionema arabicum HOM05D005857 ORTHO05D007193 4.9e-22 107.5 74 66.2
THA.LOC104801779 Tarenaya hassleriana HOM05D005857 ORTHO05D007193 4.9e-22 107.5 65 72.3
BcaB03g13096 Brassica carinata HOM05D005857 ORTHO05D007193 6.4e-22 107.1 74 68.9
BcaC05g25348 Brassica carinata HOM05D005857 ORTHO05D007193 8.4e-22 106.7 74 68.9
Cc08_g11670 Coffea canephora HOM05D005857 ORTHO05D007193 8.4e-22 106.7 74 70.3
Aqoxy5G01841 Aquilegia oxysepala HOM05D005857 ORTHO05D007193 1.1e-21 106.3 70 71.4
BcaC03g17146 Brassica carinata HOM05D005857 ORTHO05D007193 1.1e-21 106.3 61 78.7
A06p10470 Brassica napus HOM05D005857 ORTHO05D007193 1.1e-21 106.3 74 68.9
C05p12250 Brassica napus HOM05D005857 ORTHO05D007193 1.1e-21 106.3 74 68.9
BraA06t24227Z Brassica rapa HOM05D005857 ORTHO05D007193 1.1e-21 106.3 74 68.9
Thhalv10005238m.g Eutrema salsugineum HOM05D005857 ORTHO05D007193 1.1e-21 106.3 68 70.6
Thhalv10009257m.g Eutrema salsugineum HOM05D005857 ORTHO05D007193 1.1e-21 106.3 70 68.6
HanXRQChr11g0343801 Helianthus annuus HOM05D005857 ORTHO05D007193 1.4e-21 105.9 64 75.0
BolC5t29979H Brassica oleracea HOM05D005857 ORTHO05D007193 1.9e-21 105.5 74 68.9
Lalb_Chr12g0195891 Lupinus albus HOM05D005857 ORTHO05D007193 1.9e-21 105.5 68 72.1
TAR628G1233 Trochodendron aralioides HOM05D005857 ORTHO05D007193 1.9e-21 105.5 68 72.1
Solyc01g102830.3 Solanum lycopersicum HOM05D005857 ORTHO05D007193 2.4e-21 105.1 73 67.1
Sopen01g045230 Solanum pennellii HOM05D005857 ORTHO05D007193 2.4e-21 105.1 73 67.1
BcaB08g34397 Brassica carinata HOM05D005857 ORTHO05D007193 3.2e-21 104.8 74 67.6
Glyma.17G002300 Glycine max HOM05D005857 ORTHO05D007193 3.2e-21 104.8 58 79.3
Zm00001eb244200 Zea mays HOM05D005857 ORTHO05D007193 3.2e-21 104.8 66 69.7
ECA236G3879 Erigeron canadensis HOM05D005857 ORTHO05D007193 4.2e-21 104.4 74 66.2
FAN18G0749 Fragaria x ananassa HOM05D005857 ORTHO05D007193 4.2e-21 104.4 53 84.9
BcaB07g30330 Brassica carinata HOM05D005857 ORTHO05D007193 5.4e-21 104.0 69 71.0
C02p50660 Brassica napus HOM05D005857 ORTHO05D007193 5.4e-21 104.0 69 71.0
BolC2t11149H Brassica oleracea HOM05D005857 ORTHO05D007193 5.4e-21 104.0 69 71.0
BraA02t08316Z Brassica rapa HOM05D005857 ORTHO05D007193 5.4e-21 104.0 69 71.0
Carub.0001s1416 Capsella rubella HOM05D005857 ORTHO05D007193 5.4e-21 104.0 70 65.7
Carub.0005s0154 Capsella rubella HOM05D005857 ORTHO05D007193 5.4e-21 104.0 69 71.0
CAN.G1379.7 Capsicum annuum HOM05D005857 ORTHO05D007193 5.4e-21 104.0 66 72.7
CARHR014900 Cardamine hirsuta HOM05D005857 ORTHO05D007193 5.4e-21 104.0 70 67.1
CARHR145070 Cardamine hirsuta HOM05D005857 ORTHO05D007193 5.4e-21 104.0 69 71.0
Sp2g13760 Schrenkiella parvula HOM05D005857 ORTHO05D007193 7.1e-21 103.6 61 75.4
PGSC0003DMG400018258 Solanum tuberosum HOM05D005857 ORTHO05D007193 7.1e-21 103.6 73 65.8
TPR.G6546 Trifolium pratense HOM05D005857 ORTHO05D007193 7.1e-21 103.6 56 85.7
AT2G02510 Arabidopsis thaliana HOM05D005857 ORTHO05D007193 9.3e-21 103.2 69 69.6
Os02g0564200 Oryza sativa ssp. japonica HOM05D005857 ORTHO05D007193 9.3e-21 103.2 63 69.8
THA.LOC104805131 Tarenaya hassleriana HOM05D005857 ORTHO05D007193 1.2e-20 102.8 65 69.2
FAN04G0073 Fragaria x ananassa HOM05D005857 ORTHO05D007193 1.6e-20 102.4 53 83.0
MD11G1276400 Malus domestica HOM05D005857 ORTHO05D007193 2.1e-20 102.1 84 63.1
C08p16740 Brassica napus HOM05D005857 ORTHO05D007193 2.7e-20 101.7 72 63.9
AL5G11780 Arabidopsis lyrata HOM05D005857 ORTHO05D007193 4.6e-20 100.9 69 66.7
Psat0s2555g0160 Pisum sativum HOM05D005857 ORTHO05D007193 6.0e-20 100.5 56 83.9
Medtr4g134550 Medicago truncatula HOM05D005857 ORTHO05D007193 1.0e-19 99.8 59 78.0
Ciclev10003044m.g Citrus clementina HOM05D005857 ORTHO05D007193 1.3e-19 99.4 75 66.7
AUR62040136 Chenopodium quinoa HOM05D005857 ORTHO05D007193 2.3e-19 98.6 66 68.2
Ca_13524_v3 Cicer arietinum L. HOM05D005857 ORTHO05D007193 2.3e-19 98.6 58 77.6
Lj4g0009904 Lotus japonicus HOM05D005857 ORTHO05D007193 2.3e-19 98.6 59 76.3
FAN08G0400 Fragaria x ananassa HOM05D005857 ORTHO05D007193 3.0e-19 98.2 49 87.8
Phvul.003G091000 Phaseolus vulgaris HOM05D005857 ORTHO05D007193 3.0e-19 98.2 58 77.6
Aa31LG1G600 Aethionema arabicum HOM05D005857 ORTHO05D007193 3.9e-19 97.8 70 67.1
FAN13G1483 Fragaria x ananassa HOM05D005857 ORTHO05D007193 3.9e-19 97.8 67 73.1
HanXRQChr10g0285581 Helianthus annuus HOM05D005857 ORTHO05D007193 3.9e-19 97.8 64 70.3
Ciclev10003046m.g Citrus clementina HOM05D005857 ORTHO05D007193 5.1e-19 97.4 75 65.3
Peaxi162Scf00194g01021 Petunia axillaris HOM05D005857 ORTHO05D007193 5.1e-19 97.4 73 61.6
MBI03_g21081_MAGBIO Magnolia biondii HOM05D005857 ORTHO05D007193 8.7e-19 96.7 51 80.4
SHI07423 Sapria himalayana HOM05D005857 ORTHO05D007193 8.7e-19 96.7 57 73.7
AUR62032483 Chenopodium quinoa HOM05D005857 ORTHO05D007193 1.9e-18 95.5 66 66.7
ATR1089G102 Amborella trichopoda HOM05D005857 ORTHO05D007193 3.3e-18 94.7 52 76.9
Lsat_1_v5_gn_9_124880 Lactuca sativa HOM05D005857 ORTHO05D007193 7.3e-18 93.6 45 91.1
Psat4g149960 Pisum sativum HOM05D005857 ORTHO05D007193 2.8e-17 91.7 56 76.8
Nitab4.5_0001085g0140 Nicotiana tabacum HOM05D005857 ORTHO05D007193 8.1e-17 90.1 60 66.7
BcaC07g41575 Brassica carinata HOM05D005857 ORTHO05D007193 1.8e-16 89.0 74 62.2
unitig_8.g2962 Utricularia gibba HOM05D005857 ORTHO05D007193 1.2e-15 86.3 49 79.6
Actinidia11730 Actinidia chinensis HOM05D005857 ORTHO05D007193 2.6e-15 85.1 44 86.4
A02p32930 Brassica napus HOM05D005857 ORTHO05D007193 2.6e-15 85.1 53 73.6
Nitab4.5_0008987g0050 Nicotiana tabacum HOM05D005857 ORTHO05D007193 4.5e-15 84.3 53 71.7
Zm00001eb182520 Zea mays HOM05D005857 ORTHO05D007193 1.7e-14 82.4 67 53.7
EL10Ac3g06399 Beta vulgaris HOM05D005857 ORTHO05D007193 1.1e-13 79.7 47 72.3
Nitab4.5_0004030g0040 Nicotiana tabacum HOM05D005857 ORTHO05D007193 1.4e-13 79.3 55 61.8
Zm00001eb353890 Zea mays HOM05D005857 ORTHO05D007193 1.4e-13 79.3 51 68.6
Zm00001eb203220 Zea mays HOM05D005857 ORTHO05D007193 5.1e-11 70.9 50 60.0
Pp3c9_5250 Physcomitrium patens HOM05D005857 ORTHO05D007193 6.7e-11 70.5 62 53.2
Zm00001eb203730 Zea mays HOM05D005857 ORTHO05D007193 1.5e-10 69.3 49 59.2
BolC8t49293H Brassica oleracea HOM05D005857 ORTHO05D007193 1.9e-10 68.9 35 82.9
Os07g0175750 Oryza sativa ssp. japonica HOM05D005857 ORTHO05D007193 2.1e-09 65.5 47 57.4
Medtr2g036340 Medicago truncatula HOM05D005857 ORTHO05D007193 4.8e-09 64.3 60 55.0
Medtr8g046930 Medicago truncatula HOM05D005857 ORTHO05D007193 4.8e-09 64.3 60 55.0
Mapoly0052s0008 Marchantia polymorpha HOM05D005857 ORTHO05D007193 3.1e-08 61.6 48 58.3
Pp3c15_3960 Physcomitrium patens HOM05D005857 ORTHO05D007193 1.5e-07 59.3 60 46.7
GSVIVG01023132001 Vitis vinifera HOM05D005857 ORTHO05D007193 3.4e-07 58.2 28 85.7
Actinidia00143 Actinidia chinensis HOM05D005857 ORTHO05D007193 1.7e-06 55.8 48 58.3
AagrBONN_evm.TU.Sc2ySwM_369.408 Anthoceros agrestis HOM05D005857 ORTHO05D007193 2.2e-06 55.5 56 48.2
Nn3g18517 Nelumbo nucifera HOM05D005857 ORTHO05D007193 3.8e-06 54.7 42 66.7


User provided reference genes

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