Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G1819 Cannabis sativa HOM05D003848 ORTHO05D004616 5.9e-157 558.1 444 100.0
Prupe.8G239200 Prunus persica HOM05D003848 ORTHO05D004616 4.0e-81 306.2 427 70.0
CiPaw.08G106300 Carya illinoinensis HOM05D003848 ORTHO05D004616 1.3e-79 301.2 430 63.5
FAN07G0259 Fragaria x ananassa HOM05D003848 ORTHO05D004616 1.9e-78 297.4 427 71.4
FvH4_4g12190 Fragaria vesca HOM05D003848 ORTHO05D004616 4.2e-78 296.2 425 70.8
FAN17G2080 Fragaria x ananassa HOM05D003848 ORTHO05D004616 5.5e-78 295.8 426 69.2
RcHm_v2.0_Chr4g0409951 Rosa chinensis HOM05D003848 ORTHO05D004616 3.9e-76 289.7 405 71.4
VMungo0720G2447 Vigna mungo HOM05D003848 ORTHO05D004616 8.7e-76 288.5 195 79.5
Hma1.2p1_0822F.1_g224390 Hydrangea macrophylla HOM05D003848 ORTHO05D004616 1.5e-75 287.7 194 78.9
MD03G1262900 Malus domestica HOM05D003848 ORTHO05D004616 2.5e-75 287.0 187 80.7
arahy.Tifrunner.gnm1.ann1.ARWK2P Arachis hypogaea HOM05D003848 ORTHO05D004616 4.3e-75 286.2 173 87.3
arahy.Tifrunner.gnm1.ann1.X3NAFX Arachis hypogaea HOM05D003848 ORTHO05D004616 4.3e-75 286.2 173 87.3
FAN22G1557 Fragaria x ananassa HOM05D003848 ORTHO05D004616 4.3e-75 286.2 182 84.1
Thecc.01G276600 Theobroma cacao HOM05D003848 ORTHO05D004616 4.3e-75 286.2 180 84.4
MBI07_g03188_MAGBIO Magnolia biondii HOM05D003848 ORTHO05D004616 7.4e-75 285.4 192 79.7
Haze_04691 Corylus avellana HOM05D003848 ORTHO05D004616 9.7e-75 285.0 171 87.7
Dinv32920 Davidia involucrata HOM05D003848 ORTHO05D004616 1.3e-74 284.6 221 71.9
Potri.005G210900 Populus trichocarpa HOM05D003848 ORTHO05D004616 1.6e-74 284.3 159 90.6
Gorai.008G004000 Gossypium raimondii HOM05D003848 ORTHO05D004616 2.8e-74 283.5 175 86.3
GSVIVG01001165001 Vitis vinifera HOM05D003848 ORTHO05D004616 2.8e-74 283.5 174 85.6
Glyma.10G027400 Glycine max HOM05D003848 ORTHO05D004616 3.7e-74 283.1 174 85.1
Gohir.A12G004500 Gossypium hirsutum HOM05D003848 ORTHO05D004616 3.7e-74 283.1 172 87.2
Potri.002G051500 Populus trichocarpa HOM05D003848 ORTHO05D004616 4.8e-74 282.7 190 80.5
TPR.G28157 Trifolium pratense HOM05D003848 ORTHO05D004616 6.3e-74 282.3 194 79.4
ATR0332G007 Amborella trichopoda HOM05D003848 ORTHO05D004616 8.2e-74 282.0 190 78.4
Gohir.D12G004200 Gossypium hirsutum HOM05D003848 ORTHO05D004616 8.2e-74 282.0 174 86.2
SEGI_20713 Sequoiadendron giganteum HOM05D003848 ORTHO05D004616 8.2e-74 282.0 187 80.2
Glyma.02G146600 Glycine max HOM05D003848 ORTHO05D004616 1.1e-73 281.6 172 85.5
MD11G1283600 Malus domestica HOM05D003848 ORTHO05D004616 1.1e-73 281.6 425 68.2
PGR119G0967 Punica granatum HOM05D003848 ORTHO05D004616 1.1e-73 281.6 168 86.9
CDE06G2067 Ceratophyllum demersum HOM05D003848 ORTHO05D004616 1.4e-73 281.2 187 79.7
COL.COLO4_09072 Corchorus olitorius HOM05D003848 ORTHO05D004616 1.4e-73 281.2 161 90.1
Cc00_g04130 Coffea canephora HOM05D003848 ORTHO05D004616 1.8e-73 280.8 186 79.6
Phvul.007G172800 Phaseolus vulgaris HOM05D003848 ORTHO05D004616 1.8e-73 280.8 186 80.6
Sabra05G0161100 Salix brachista HOM05D003848 ORTHO05D004616 1.8e-73 280.8 161 87.6
Cpa.g.sc52.49 Carica papaya HOM05D003848 ORTHO05D004616 3.1e-73 280.0 170 87.1
FAN22G0164 Fragaria x ananassa HOM05D003848 ORTHO05D004616 3.1e-73 280.0 432 69.2
TWI59G1147 Tripterygium wilfordii HOM05D003848 ORTHO05D004616 3.1e-73 280.0 183 81.4
Atru.chr5.1462 Acer truncatum HOM05D003848 ORTHO05D004616 5.3e-73 279.3 461 61.8
Cc01_g10690 Coffea canephora HOM05D003848 ORTHO05D004616 5.3e-73 279.3 181 80.7
Ciclev10019827m.g Citrus clementina HOM05D003848 ORTHO05D004616 6.9e-73 278.9 177 84.2
ATR0824G270 Amborella trichopoda HOM05D003848 ORTHO05D004616 9.0e-73 278.5 194 77.3
Ca_09749_v3 Cicer arietinum L. HOM05D003848 ORTHO05D004616 9.0e-73 278.5 168 86.9
Cfa006159 Carpinus fangiana HOM05D003848 ORTHO05D004616 1.2e-72 278.1 428 65.0
Medtr8g028640 Medicago truncatula HOM05D003848 ORTHO05D004616 1.2e-72 278.1 174 83.3
Haze_16066 Corylus avellana HOM05D003848 ORTHO05D004616 2.6e-72 276.9 428 66.6
Mapoly0051s0007 Marchantia polymorpha HOM05D003848 ORTHO05D004616 2.6e-72 276.9 154 90.9
Nitab4.5_0005156g0010 Nicotiana tabacum HOM05D003848 ORTHO05D004616 2.6e-72 276.9 191 78.0
Nn1g02285 Nelumbo nucifera HOM05D003848 ORTHO05D004616 3.4e-72 276.6 161 87.6
Cfa003508 Carpinus fangiana HOM05D003848 ORTHO05D004616 4.5e-72 276.2 428 61.7
Nitab4.5_0006700g0010 Nicotiana tabacum HOM05D003848 ORTHO05D004616 4.5e-72 276.2 183 80.3
THA.LOC104801238 Tarenaya hassleriana HOM05D003848 ORTHO05D004616 1.0e-71 275.0 158 88.6
HanXRQChr01g0002971 Helianthus annuus HOM05D003848 ORTHO05D004616 1.3e-71 274.6 169 84.0
SHI27493 Sapria himalayana HOM05D004058 ORTHO05D001984 1.3e-71 274.6 180 80.0
CBR_g4136 Chara braunii HOM05D003848 ORTHO05D004616 1.7e-71 274.2 164 82.9
Lj1C175T4 Lonicera japonica HOM05D003848 ORTHO05D004616 1.7e-71 274.2 178 82.0
Lj2C1116T3 Lonicera japonica HOM05D003848 ORTHO05D004616 2.2e-71 273.9 175 82.3
QL01p012613 Quercus lobata HOM05D003848 ORTHO05D004616 3.8e-71 273.1 436 64.9
THA.LOC104825995 Tarenaya hassleriana HOM05D003848 ORTHO05D004616 5.0e-71 272.7 162 86.4
HPP92_009020 Vanilla planifolia HOM05D003848 ORTHO05D004616 5.0e-71 272.7 174 83.3
Actinidia24902 Actinidia chinensis HOM05D003848 ORTHO05D004616 1.1e-70 271.6 170 83.5
Pp3c9_17960 Physcomitrium patens HOM05D003848 ORTHO05D004616 1.9e-70 270.8 185 78.9
MSTRG.21553 Avicennia marina HOM05D003848 ORTHO05D004616 3.2e-70 270.0 172 80.2
Ah.02g110950 Amaranthus hybridus HOM05D003848 ORTHO05D004616 7.2e-70 268.9 157 86.6
vmacro18863 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 7.2e-70 268.9 171 83.6
AagrBONN_evm.TU.Sc2ySwM_362.1784 Anthoceros agrestis HOM05D003848 ORTHO05D004616 9.4e-70 268.5 180 80.0
TAR369G1095 Trochodendron aralioides HOM05D003848 ORTHO05D004616 9.4e-70 268.5 176 80.1
Psat4g156760 Pisum sativum HOM05D003848 ORTHO05D004616 1.2e-69 268.1 419 68.7
TAR633G0718 Trochodendron aralioides HOM05D003848 ORTHO05D004616 1.2e-69 268.1 161 85.7
Lalb_Chr06g0162931 Lupinus albus HOM05D003848 ORTHO05D004616 2.7e-69 266.9 430 69.1
Zm00001eb314820 Zea mays HOM05D003848 ORTHO05D004616 3.6e-69 266.5 175 80.6
Oeu041715.2 Olea europaea HOM05D003848 ORTHO05D004616 4.6e-69 266.2 176 79.0
SGA_v2.0_scaffold1G00491 Striga asiatica HOM05D003848 ORTHO05D004616 4.6e-69 266.2 191 74.9
Aqoxy2G03377 Aquilegia oxysepala HOM05D003848 ORTHO05D004616 1.8e-68 264.2 176 79.0
Migut.D00312 Erythranthe guttata HOM05D003848 ORTHO05D004616 2.3e-68 263.8 165 81.8
Aa31LG5G2360 Aethionema arabicum HOM05D003848 ORTHO05D004616 3.9e-68 263.1 189 75.7
Oeu028073.1 Olea europaea HOM05D003848 ORTHO05D004616 3.9e-68 263.1 190 74.7
SMO231G0049 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 3.9e-68 263.1 156 85.9
SMO351G0411 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 3.9e-68 263.1 156 85.9
Rhsim01G0273900 Rhododendron simsii HOM05D003848 ORTHO05D004616 6.7e-68 262.3 170 81.8
vmacro19513 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 8.8e-68 261.9 190 75.8
unitig_0.g1040 Utricularia gibba HOM05D003848 ORTHO05D004616 1.1e-67 261.5 174 78.2
MELO3C009735.2 Cucumis melo HOM05D003848 ORTHO05D004616 2.0e-67 260.8 170 82.4
ECA248G3600 Erigeron canadensis HOM05D003848 ORTHO05D004616 2.0e-67 260.8 180 77.8
Manes.05G077600 Manihot esculenta HOM05D003848 ORTHO05D004616 2.0e-67 260.8 194 74.7
EL10Ac5g10556 Beta vulgaris HOM05D003848 ORTHO05D004616 4.3e-67 259.6 174 77.0
Lsat_1_v5_gn_5_184160 Lactuca sativa HOM05D003848 ORTHO05D004616 4.3e-67 259.6 170 81.8
CsaV3_3G039920 Cucumis sativus L. HOM05D003848 ORTHO05D004616 5.7e-67 259.2 176 80.1
ClCG10G016420 Citrullus lanatus HOM05D003848 ORTHO05D004616 9.7e-67 258.5 170 81.8
Duzib177G1090 Durio zibethinus HOM05D003848 ORTHO05D004616 1.3e-66 258.1 169 79.9
CAN.G439.4 Capsicum annuum HOM05D003848 ORTHO05D004616 1.7e-66 257.7 195 72.8
Sc24g0003320 Simmondsia chinensis HOM05D003848 ORTHO05D004616 1.7e-66 257.7 186 76.3
Solyc11g071660.1 Solanum lycopersicum HOM05D003848 ORTHO05D004616 1.7e-66 257.7 190 74.7
AagrBONN_evm.TU.Sc2ySwM_344.5133 Anthoceros agrestis HOM05D003848 ORTHO05D004616 2.8e-66 256.9 147 88.4
AT4G02720 Arabidopsis thaliana HOM05D003848 ORTHO05D004616 2.8e-66 256.9 184 75.0
Sed0011367 Sechium edule HOM05D003848 ORTHO05D004616 2.8e-66 256.9 154 87.0
PGSC0003DMG400046756 Solanum tuberosum HOM05D003848 ORTHO05D004616 2.8e-66 256.9 184 76.1
Sopen11g029330 Solanum pennellii HOM05D003848 ORTHO05D004616 4.8e-66 256.1 192 73.4
Hund11854 Selenicereus undatus HOM05D003848 ORTHO05D004616 1.1e-65 255.0 189 75.7
AUR62017852 Chenopodium quinoa HOM05D003848 ORTHO05D004616 1.4e-65 254.6 159 83.0
Carub.0006s3439 Capsella rubella HOM05D003848 ORTHO05D004616 9.1e-65 251.9 185 72.4
AUR62003538 Chenopodium quinoa HOM05D003848 ORTHO05D004616 9.1e-65 251.9 191 73.3
Lj5g0005692 Lotus japonicus HOM05D003848 ORTHO05D004616 9.1e-65 251.9 424 61.6
Thhalv10028691m.g Eutrema salsugineum HOM05D003848 ORTHO05D004616 1.2e-64 251.5 169 77.5
DCAR_000720 Daucus carota HOM05D003848 ORTHO05D004616 2.0e-64 250.8 176 76.7
PSO210G3188 Papaver somniferum HOM05D003848 ORTHO05D004616 2.0e-64 250.8 162 80.9
PSO832G2619 Papaver somniferum HOM05D003848 ORTHO05D004616 2.6e-64 250.4 162 80.9
BcaB01g02014 Brassica carinata HOM05D003848 ORTHO05D004616 4.5e-64 249.6 174 76.4
CARHR251050 Cardamine hirsuta HOM05D003848 ORTHO05D004616 5.9e-64 249.2 174 75.3
Peaxi162Scf00217g00025 Petunia axillaris HOM05D003848 ORTHO05D004616 1.7e-63 247.7 150 86.7
Sp6g02650 Schrenkiella parvula HOM05D003848 ORTHO05D004616 2.2e-63 247.3 175 75.4
Manes.01G206800 Manihot esculenta HOM05D003848 ORTHO05D004616 6.5e-63 245.7 439 51.7
BcaC01g01560 Brassica carinata HOM05D003848 ORTHO05D004616 8.5e-63 245.4 169 75.1
AL6G50290 Arabidopsis lyrata HOM05D003848 ORTHO05D004616 1.1e-62 245.0 177 75.1
C03p93080 Brassica napus HOM05D003848 ORTHO05D004616 7.2e-62 242.3 167 76.0
C03p93150 Brassica napus HOM05D003848 ORTHO05D004616 1.4e-60 238.0 154 77.9
A09p02120 Brassica napus HOM05D003848 ORTHO05D004616 2.6e-59 233.8 127 89.0
BraA09t35861Z Brassica rapa HOM05D003848 ORTHO05D004616 2.6e-59 233.8 127 89.0
BolC8t51344H Brassica oleracea HOM05D003848 ORTHO05D004616 4.4e-59 233.0 169 71.6
C08p37610 Brassica napus HOM05D003848 ORTHO05D004616 7.4e-59 232.3 126 88.9
BolC9t53150H Brassica oleracea HOM05D003848 ORTHO05D004616 7.4e-59 232.3 126 88.9
BcaC01g01554 Brassica carinata HOM05D003848 ORTHO05D004616 3.7e-58 229.9 125 88.8
C03p93070 Brassica napus HOM05D003848 ORTHO05D004616 3.7e-58 229.9 130 85.4
BraA04t17534Z Brassica rapa HOM05D003848 ORTHO05D004616 1.1e-57 228.4 179 68.2
BcaC02g08380 Brassica carinata HOM05D003848 ORTHO05D004616 1.8e-57 227.6 171 70.8
BolC3t21610H Brassica oleracea HOM05D003848 ORTHO05D004616 1.8e-57 227.6 124 88.7
BcaC04g24009 Brassica carinata HOM05D003848 ORTHO05D004616 2.4e-57 227.3 126 87.3
C03p93100 Brassica napus HOM05D003848 ORTHO05D004616 3.1e-57 226.9 125 88.0
C09p02220 Brassica napus HOM05D003848 ORTHO05D004616 7.0e-57 225.7 166 72.9
BcaC01g01558 Brassica carinata HOM05D003848 ORTHO05D004616 1.2e-56 224.9 123 88.6
TPR.G23082 Trifolium pratense HOM05D003848 ORTHO05D004616 1.5e-56 224.6 126 89.7
A04p19390 Brassica napus HOM05D003848 ORTHO05D004616 2.0e-56 224.2 180 66.7
A09p54740 Brassica napus HOM05D003848 ORTHO05D004616 2.6e-56 223.8 121 89.3
C04p54970 Brassica napus HOM05D003848 ORTHO05D004616 1.0e-55 221.9 168 71.4
BolC4t27032H Brassica oleracea HOM05D003848 ORTHO05D004616 1.0e-55 221.9 168 71.4
BolC3t21613H Brassica oleracea HOM05D003848 ORTHO05D004616 1.3e-55 221.5 125 85.6
C09p02210 Brassica napus HOM05D003848 ORTHO05D004616 1.7e-55 221.1 121 88.4
A09p30470 Brassica napus HOM05D003848 ORTHO05D004616 8.5e-55 218.8 123 86.2
QL03p072399 Quercus lobata HOM05D003848 ORTHO05D004616 1.9e-54 217.6 146 79.5
BcaC01g01561 Brassica carinata HOM05D003848 ORTHO05D004616 2.5e-54 217.2 122 86.1
Rhsim10G0030500 Rhododendron simsii HOM05D003848 ORTHO05D004616 7.2e-54 215.7 148 80.4
CDE07G1463 Ceratophyllum demersum HOM05D003848 ORTHO05D004616 1.1e-51 208.4 182 64.3
Ca_04836_v3 Cicer arietinum L. HOM05D001515 ORTHO05D004616 8.5e-47 192.2 142 75.4
arahy.Tifrunner.gnm1.ann1.3GG3GM Arachis hypogaea HOM05D004461 ORTHO05D005543 8.0e-45 185.7 128 78.9
SalBow4G2167 Salvia bowleyana HOM05D003848 ORTHO05D004616 6.8e-44 182.6 187 58.3
SGA_v2.0_scaffold138G35328 Striga asiatica HOM05D003848 ORTHO05D004616 3.4e-43 180.3 164 63.4
Nn4g26302 Nelumbo nucifera HOM05D003848 ORTHO05D004616 1.3e-42 178.3 101 90.1
C03p93140 Brassica napus HOM05D003848 ORTHO05D004616 3.1e-41 173.7 126 75.4
Oeu017054.1 Olea europaea HOM05D004271 ORTHO05D006011 7.0e-41 172.6 137 73.0
BcaC03g13677 Brassica carinata HOM05D003848 ORTHO05D004616 1.6e-40 171.4 144 64.6
MCO02G035 Micromonas commoda HOM05D003848 ORTHO05D004616 2.0e-40 171.0 106 81.1
BcaC03g16168 Brassica carinata HOM05D003848 ORTHO05D004616 4.2e-38 163.3 95 82.1
Hma1.2p1_0667F.1_g199770 Hydrangea macrophylla HOM05D003848 ORTHO05D004616 2.0e-35 154.5 159 57.2
PRCOL_00001828 Prasinoderma coloniale HOM05D003848 ORTHO05D004616 4.4e-35 153.3 105 71.4
Cre01.g032250 Chlamydomonas reinhardtii HOM05D003848 ORTHO05D004616 1.2e-32 145.2 127 60.6
BraA09t40884Z Brassica rapa HOM05D003848 ORTHO05D004616 2.3e-31 141.0 76 88.2
BraA09t38617Z Brassica rapa HOM05D003848 ORTHO05D004616 1.5e-30 138.3 76 86.8
FAN22G1718 Fragaria x ananassa HOM05D003848 ORTHO05D004616 5.6e-30 136.3 335 66.0
Os09g0455400 Oryza sativa ssp. japonica HOM05D003848 ORTHO05D004616 1.6e-29 134.8 70 94.3
Actinidia21120 Actinidia chinensis HOM05D003848 ORTHO05D004616 6.1e-29 132.9 176 51.1
Haze_27548 Corylus avellana HOM05D003848 ORTHO05D004616 2.3e-28 131.0 103 58.3
C02p39120 Brassica napus HOM05D003848 ORTHO05D004616 9.8e-27 125.6 76 78.9
BolC2t09922H Brassica oleracea HOM05D003848 ORTHO05D004616 2.9e-26 124.0 76 77.6
unitig_0.g1042 Utricularia gibba HOM05D003848 ORTHO05D004616 1.9e-22 111.3 67 80.6
BNapus_Darmor_BZH_scaffold_38p02440 Brassica napus HOM05D003848 ORTHO05D004616 1.2e-21 108.6 60 86.7
BNapus_Darmor_BZH_scaffold_38p02460 Brassica napus HOM05D003848 ORTHO05D004616 1.2e-21 108.6 60 86.7
Ca_05843_v3 Cicer arietinum L. HOM05D003848 ORTHO05D004616 9.8e-19 99.0 48 97.9
BolC2t06954H Brassica oleracea HOM05D003848 ORTHO05D004616 1.3e-18 98.6 60 81.7
MD07G1100600 Malus domestica HOM05D003848 ORTHO05D004616 2.2e-18 97.8 56 87.5
vmacro19512 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 2.2e-18 97.8 171 42.1
Prupe.6G167600 Prunus persica HOM05D003848 ORTHO05D004616 7.8e-16 89.4 159 40.3
FAN22G0082 Fragaria x ananassa HOM05D003848 ORTHO05D035678 8.9e-12 75.9 101 46.5
FvH4_2g11951 Fragaria vesca HOM05D003848 ORTHO05D035678 2.5e-06 57.8 43 65.1


User provided reference genes

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