Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G1537 Cannabis sativa HOM05D005068 ORTHO05D007561 0.0e+00 1798.1 1040 100.0
CiPaw.01G213900 Carya illinoinensis HOM05D005068 ORTHO05D007561 0.0e+00 1153.3 1073 64.0
Manes.09G018800 Manihot esculenta HOM05D005068 ORTHO05D007561 0.0e+00 1148.3 1056 65.2
QL05p001958 Quercus lobata HOM05D005068 ORTHO05D007561 0.0e+00 1142.5 1073 64.9
Cfa003490 Carpinus fangiana HOM05D005068 ORTHO05D007561 0.0e+00 1136.7 1069 65.8
CSS0009347 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 0.0e+00 1135.6 1029 64.5
MD17G1151100 Malus domestica HOM05D005068 ORTHO05D007561 0.0e+00 1131.3 1048 64.8
CSS0048439 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 0.0e+00 1130.5 1029 64.2
MD09G1175700 Malus domestica HOM05D005068 ORTHO05D007561 0.0e+00 1130.5 1072 63.3
Sed0003275 Sechium edule HOM05D005068 ORTHO05D007561 0.0e+00 1127.5 1040 64.0
MELO3C024322.2 Cucumis melo HOM05D005068 ORTHO05D007561 0.0e+00 1124.4 1043 65.1
TAR628G1511 Trochodendron aralioides HOM05D005068 ORTHO05D007561 0.0e+00 1123.2 1008 65.1
Phvul.010G125200 Phaseolus vulgaris HOM05D005068 ORTHO05D007561 0.0e+00 1119.0 1036 65.5
Glyma.07G043700 Glycine max HOM05D005068 ORTHO05D007561 0.0e+00 1117.8 1038 65.4
Prupe.3G034700 Prunus persica HOM05D005068 ORTHO05D007561 0.0e+00 1116.3 1030 66.3
Sed0017975 Sechium edule HOM05D005068 ORTHO05D007561 0.0e+00 1112.4 1039 61.9
Atru.chr1.4129 Acer truncatum HOM05D005068 ORTHO05D007561 0.0e+00 1112.1 1050 64.8
arahy.Tifrunner.gnm1.ann1.JS5XG8 Arachis hypogaea HOM05D005068 ORTHO05D007561 0.0e+00 1107.8 1038 64.6
VMungo0331G1431 Vigna mungo HOM05D005068 ORTHO05D007561 0.0e+00 1103.6 1027 64.8
CsaV3_7G034120 Cucumis sativus L. HOM05D005068 ORTHO05D007561 0.0e+00 1102.0 1028 63.3
GSVIVG01016696001 Vitis vinifera HOM05D005068 ORTHO05D007561 0.0e+00 1097.4 1044 62.0
Potri.001G164100 Populus trichocarpa HOM05D005068 ORTHO05D007561 0.0e+00 1091.3 1045 63.9
TWI59G1220 Tripterygium wilfordii HOM05D005068 ORTHO05D007561 0.0e+00 1082.8 1110 60.0
Lalb_Chr04g0253821 Lupinus albus HOM05D005068 ORTHO05D007561 0.0e+00 1078.9 990 65.2
PGR102G2847 Punica granatum HOM05D005068 ORTHO05D007561 2.1e-311 1072.4 1016 64.9
Psat2g016360 Pisum sativum HOM05D005068 ORTHO05D007561 5.4e-310 1067.8 1060 61.9
RcHm_v2.0_Chr2g0147011 Rosa chinensis HOM05D005068 ORTHO05D007561 3.5e-309 1065.1 1018 62.8
Ciclev10024779m.g Citrus clementina HOM05D005068 ORTHO05D007561 1.3e-308 1063.1 1082 61.0
Haze_16103 Corylus avellana HOM05D005068 ORTHO05D007561 1.3e-308 1063.1 1207 57.4
FAN14G5424 Fragaria x ananassa HOM05D005068 ORTHO05D007561 1.5e-307 1059.7 1035 63.8
Gorai.011G056800 Gossypium raimondii HOM05D005068 ORTHO05D007561 1.9e-307 1059.3 1039 62.0
FAN05G3041 Fragaria x ananassa HOM05D005068 ORTHO05D007561 3.3e-307 1058.5 1015 63.2
Gohir.D10G053200 Gossypium hirsutum HOM05D005068 ORTHO05D007561 2.1e-306 1055.8 1038 61.8
FvH4_6g35460 Fragaria vesca HOM05D005068 ORTHO05D007561 1.4e-305 1053.1 1059 62.6
CAN.G790.67 Capsicum annuum HOM05D005068 ORTHO05D007561 3.1e-305 1052.0 1030 59.7
Eucgr.J02606 Eucalyptus grandis HOM05D005068 ORTHO05D007561 1.2e-304 1050.0 1044 63.6
Lj3g0023295 Lotus japonicus HOM05D005068 ORTHO05D007561 1.5e-304 1049.7 1067 59.3
PSO384G5027 Papaver somniferum HOM05D005068 ORTHO05D007561 1.5e-304 1049.7 1082 57.3
Hund18654 Selenicereus undatus HOM05D005068 ORTHO05D007561 2.6e-304 1048.9 1053 60.4
Solyc03g123530.4 Solanum lycopersicum HOM05D005068 ORTHO05D007561 9.8e-304 1047.0 1028 59.3
Medtr5g019130 Medicago truncatula HOM05D005068 ORTHO05D007561 1.3e-303 1046.6 1071 60.4
PSO339G5314 Papaver somniferum HOM05D005068 ORTHO05D007561 3.7e-303 1045.0 1080 60.0
Aqoxy1G00349 Aquilegia oxysepala HOM05D005068 ORTHO05D007561 1.4e-302 1043.1 1034 61.0
Medtr4g119670 Medicago truncatula HOM05D005068 ORTHO05D007561 9.2e-302 1040.4 1033 62.2
HanXRQChr12g0360151 Helianthus annuus HOM05D005068 ORTHO05D007561 4.6e-301 1038.1 1014 62.6
ClCG09G001250 Citrullus lanatus HOM05D005068 ORTHO05D007561 1.1e-299 1033.5 1037 61.2
Glyma.16G012100 Glycine max HOM05D005068 ORTHO05D007561 3.3e-299 1031.9 1043 62.3
Sabra01G0128700 Salix brachista HOM05D005068 ORTHO05D007561 1.2e-298 1030.0 1040 62.3
Nitab4.5_0003981g0040 Nicotiana tabacum HOM05D005068 ORTHO05D007561 3.6e-298 1028.5 1034 60.4
TPR.G16658 Trifolium pratense HOM05D005068 ORTHO05D007561 3.6e-298 1028.5 1061 60.7
ECA234G0903 Erigeron canadensis HOM05D005068 ORTHO05D007561 6.2e-298 1027.7 1008 62.6
Lsat_1_v5_gn_5_136720 Lactuca sativa HOM05D005068 ORTHO05D007561 2.3e-297 1025.8 1021 63.3
Gohir.A10G051500 Gossypium hirsutum HOM05D005068 ORTHO05D007561 2.0e-296 1022.7 1034 61.0
Cpa.g.sc25.173 Carica papaya HOM05D005068 ORTHO05D007561 1.1e-294 1016.9 1087 56.8
Ca_23422_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 5.4e-294 1014.6 1063 61.1
THA.LOC104808063 Tarenaya hassleriana HOM05D005068 ORTHO05D007561 5.4e-294 1014.6 963 63.9
Nitab4.5_0009947g0020 Nicotiana tabacum HOM05D005068 ORTHO05D007561 1.3e-292 1010.0 911 62.1
arahy.Tifrunner.gnm1.ann1.X03KN2 Arachis hypogaea HOM05D005068 ORTHO05D007561 1.7e-292 1009.6 1054 59.9
EL10Ac7g16459 Beta vulgaris HOM05D005068 ORTHO05D007561 2.3e-292 1009.2 1092 57.9
Thecc.06G127400 Theobroma cacao HOM05D005068 ORTHO05D007561 1.1e-291 1006.9 1052 60.9
Cc04_g00890 Coffea canephora HOM05D005068 ORTHO05D007561 1.5e-291 1006.5 1024 60.6
Peaxi162Scf00038g02247 Petunia axillaris HOM05D005068 ORTHO05D007561 1.5e-291 1006.5 1037 58.8
MSTRG.22527 Avicennia marina HOM05D005068 ORTHO05D007561 9.5e-291 1003.8 1030 61.3
FAN09G4827 Fragaria x ananassa HOM05D005068 ORTHO05D007561 1.1e-289 1000.3 1051 61.1
Sopen03g041300 Solanum pennellii HOM05D005068 ORTHO05D007561 1.8e-289 999.6 1044 57.5
AT1G72440 Arabidopsis thaliana HOM05D005068 ORTHO05D007561 4.0e-289 998.4 948 61.0
Oeu000383.1 Olea europaea HOM05D005068 ORTHO05D007561 9.9e-288 993.8 1034 57.8
Sp5g27520 Schrenkiella parvula HOM05D005068 ORTHO05D007561 2.9e-287 992.3 927 62.0
AL2G32110 Arabidopsis lyrata HOM05D005068 ORTHO05D007561 2.4e-286 989.2 919 62.4
Rhsim08G0242500 Rhododendron simsii HOM05D005068 ORTHO05D007561 1.2e-285 986.9 1025 62.0
C06p46800 Brassica napus HOM05D005068 ORTHO05D007561 2.8e-282 975.7 1018 60.6
SalBow6G5915 Salvia bowleyana HOM05D005068 ORTHO05D007561 4.7e-282 974.9 1048 60.0
BolC6t39723H Brassica oleracea HOM05D005068 ORTHO05D007561 6.2e-282 974.5 1027 60.2
AUR62009935 Chenopodium quinoa HOM05D005068 ORTHO05D007561 1.8e-281 973.0 1070 54.2
Ca_30848_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 3.4e-280 968.8 875 64.0
Peaxi162Scf00535g00325 Petunia axillaris HOM05D005068 ORTHO05D007561 5.8e-280 968.0 1032 57.8
BcaC08g46695 Brassica carinata HOM05D005068 ORTHO05D007561 9.9e-280 967.2 1018 59.7
Carub.0002s1929 Capsella rubella HOM05D005068 ORTHO05D007561 2.9e-279 965.7 872 63.1
Thhalv10018056m.g Eutrema salsugineum HOM05D005068 ORTHO05D007561 3.8e-279 965.3 1050 58.5
BcaB03g14995 Brassica carinata HOM05D005068 ORTHO05D007561 1.0e-276 957.2 934 61.7
DCAR_026429 Daucus carota HOM05D005068 ORTHO05D007561 6.6e-276 954.5 1035 58.6
AUR62001432 Chenopodium quinoa HOM05D005068 ORTHO05D007561 1.9e-275 953.0 1061 53.7
CARHR065370 Cardamine hirsuta HOM05D005068 ORTHO05D007561 1.3e-274 950.3 1052 56.7
Lj5A31T61 Lonicera japonica HOM05D005068 ORTHO05D007561 2.4e-273 946.0 872 62.3
Nn8g38536 Nelumbo nucifera HOM05D005068 ORTHO05D007561 9.9e-272 940.6 1036 56.1
Aa31LG4G2770 Aethionema arabicum HOM05D005068 ORTHO05D007561 1.2e-269 933.7 947 60.2
BraA07t31420Z Brassica rapa HOM05D005068 ORTHO05D007561 1.5e-264 916.8 1020 56.7
unitig_26.g8921 Utricularia gibba HOM05D005068 ORTHO05D007561 2.2e-263 912.9 1057 55.2
HPP92_014041 Vanilla planifolia HOM05D005068 ORTHO05D007561 3.2e-262 909.1 1059 55.1
CDE05G0629 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 1.1e-257 894.0 1022 53.8
vmacro15071 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 1.7e-255 886.7 858 60.6
MBI13_g01677_MAGBIO Magnolia biondii HOM05D005068 ORTHO05D007561 4.6e-253 878.6 857 58.7
ATR0317G028 Amborella trichopoda HOM05D005068 ORTHO05D007561 5.3e-249 865.1 1073 52.5
Actinidia21819 Actinidia chinensis HOM05D005068 ORTHO05D007561 2.2e-247 859.8 891 61.4
Os09g0116400 Oryza sativa ssp. japonica HOM05D005068 ORTHO05D007561 4.6e-245 852.0 1030 50.8
SGA_v2.0_scaffold71G23904 Striga asiatica HOM05D005068 ORTHO05D007561 1.4e-244 850.5 1018 54.6
Zm00001eb008900 Zea mays HOM05D005068 ORTHO05D007561 5.7e-243 845.1 1041 52.2
Nitab4.5_0007072g0030 Nicotiana tabacum HOM05D005068 ORTHO05D007561 4.8e-234 815.5 827 60.0
SEGI_35987 Sequoiadendron giganteum HOM05D005068 ORTHO05D007561 6.7e-228 795.0 1094 48.4
vmacro14086 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 4.1e-217 759.2 619 68.2
COL.COLO4_30833 Corchorus olitorius HOM05D005068 ORTHO05D007561 4.5e-216 755.7 585 70.1
TAR383G0209 Trochodendron aralioides HOM05D005068 ORTHO05D007561 3.2e-214 749.6 713 62.8
FAN02G4153 Fragaria x ananassa HOM05D005068 ORTHO05D007561 3.4e-211 739.6 608 67.4
Migut.I01119 Erythranthe guttata HOM05D005068 ORTHO05D007561 8.0e-205 718.4 1023 48.3
SHI38508 Sapria himalayana HOM05D005068 ORTHO05D007561 2.7e-192 676.8 1010 47.3
AagrBONN_evm.TU.Sc2ySwM_228.3616 Anthoceros agrestis HOM05D005068 ORTHO05D007561 1.7e-186 657.5 918 44.9
Pp3c8_7540 Physcomitrium patens HOM05D005068 ORTHO05D007561 2.8e-181 640.2 1158 39.0
A07p38620 Brassica napus HOM05D005068 ORTHO05D007561 2.2e-178 630.6 546 65.2
Dinv37834 Davidia involucrata HOM05D005068 ORTHO05D007561 6.6e-175 619.0 497 69.4
Mapoly0001s0039 Marchantia polymorpha HOM05D005068 ORTHO05D007561 9.5e-174 615.1 908 43.5
Sc12g0010810 Simmondsia chinensis HOM05D005068 ORTHO05D007561 7.1e-169 599.0 738 54.7
ECA234G3781 Erigeron canadensis HOM05D005068 ORTHO05D007561 5.8e-163 579.3 904 45.0
PGSC0003DMG400009145 Solanum tuberosum HOM05D005068 ORTHO05D007561 2.0e-147 527.7 604 54.5
CBR_g4353 Chara braunii HOM05D005068 ORTHO05D007561 1.4e-145 521.5 882 39.1
CDE11G1047 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 5.5e-137 493.0 650 46.8
SMO356G0436 Selaginella moellendorffii HOM05D005068 ORTHO05D007561 2.5e-134 484.2 849 39.5
Dinv37835 Davidia involucrata HOM05D005068 ORTHO05D007561 5.0e-122 443.4 366 67.2
Cre10.g459600 Chlamydomonas reinhardtii HOM05D005068 ORTHO05D007561 2.7e-104 384.4 758 36.5
CDE11G0362 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 1.5e-102 378.6 357 60.8
Haze_25369 Corylus avellana HOM05D005068 ORTHO05D007561 4.2e-89 334.0 631 39.6
TAR383G0400 Trochodendron aralioides HOM05D005068 ORTHO05D007561 4.7e-88 330.5 297 62.0
PRCOL_00007240 Prasinoderma coloniale HOM05D005068 ORTHO05D007561 3.5e-83 314.3 620 40.5
Cfa026526 Carpinus fangiana HOM05D005068 ORTHO05D007561 3.7e-69 267.7 740 30.4
SHI25215 Sapria himalayana HOM05D005068 ORTHO05D007561 3.7e-69 267.7 594 40.2
Cc00_g06320 Coffea canephora HOM05D005068 ORTHO05D007561 9.5e-65 253.1 202 68.8
Psat7g194920 Pisum sativum HOM05D005068 ORTHO05D030493 4.3e-57 227.6 227 59.5
vmacro14085 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 1.2e-54 219.5 228 57.0
FAN23G2170 Fragaria x ananassa HOM05D005068 ORTHO05D007561 1.7e-53 215.7 179 66.5
MSTRG.13912 Avicennia marina HOM05D005068 ORTHO05D019833 2.6e-46 191.8 258 60.1
Psat7g194960 Pisum sativum HOM05D005068 ORTHO05D030493 7.4e-33 147.1 160 55.0
Hund18058 Selenicereus undatus HOM05D005068 ORTHO05D030493 6.2e-32 144.1 157 54.8
HanXRQChr04g0122031 Helianthus annuus HOM05D005068 ORTHO05D007561 1.3e-29 136.3 132 58.3
Psat4g066440 Pisum sativum HOM05D005068 ORTHO05D030493 1.7e-29 136.0 92 72.8
Lj5C31T11 Lonicera japonica HOM05D005068 ORTHO05D019833 7.6e-22 110.5 211 50.2
Sc16g0005210 Simmondsia chinensis HOM05D005068 ORTHO05D019833 1.9e-20 105.9 218 44.5
Zm00001eb239840 Zea mays HOM05D001561 ORTHO05D001715 1.9e-20 105.9 79 63.3
ECA233G2064 Erigeron canadensis HOM05D005068 ORTHO05D007561 1.6e-19 102.8 82 64.6
COL.COLO4_30832 Corchorus olitorius HOM05D005068 ORTHO05D014954 1.5e-17 96.3 52 90.4
vmacro15070 Vaccinium macrocarpon HOM05D005068 ORTHO05D019833 7.4e-17 94.0 211 44.5
Sc16g0005100 Simmondsia chinensis HOM05D005068 ORTHO05D014954 2.2e-16 92.4 57 78.9
C04p42190 Brassica napus HOM05D014151 ORTHO05D014954 4.8e-08 64.7 46 67.4
C09p50490 Brassica napus HOM05D014151 ORTHO05D014954 4.8e-08 64.7 46 67.4
C03p21460 Brassica napus HOM05D014151 ORTHO05D014954 1.8e-07 62.8 46 65.2
BolC3t14532H Brassica oleracea HOM05D014151 ORTHO05D014954 1.8e-07 62.8 46 65.2
BcaC09g47952 Brassica carinata HOM05D014151 ORTHO05D014954 4.1e-07 61.6 46 63.0
vmacro14087 Vaccinium macrocarpon HOM05D005068 ORTHO05D019833 1.2e-06 60.1 79 78.5


User provided reference genes

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