Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G1534 Cannabis sativa HOM05D004560 ORTHO05D005540 0.0e+00 4414.8 2415 100.0
Prupe.7G134200 Prunus persica HOM05D004560 ORTHO05D005540 0.0e+00 2718.7 2535 65.4
QL06p041719 Quercus lobata HOM05D004560 ORTHO05D005540 0.0e+00 2645.9 2520 64.4
MD02G1171200 Malus domestica HOM05D004560 ORTHO05D005540 0.0e+00 2628.6 2543 63.4
MD15G1283100 Malus domestica HOM05D004560 ORTHO05D005540 0.0e+00 2600.9 2543 62.8
Cfa004012 Carpinus fangiana HOM05D004560 ORTHO05D005540 0.0e+00 2562.7 2507 62.5
CiPaw.02G008700 Carya illinoinensis HOM05D004560 ORTHO05D005540 0.0e+00 2495.3 2507 61.6
FvH4_5g28170 Fragaria vesca HOM05D004560 ORTHO05D005540 0.0e+00 2475.7 2567 60.9
Thecc.01G055000 Theobroma cacao HOM05D004560 ORTHO05D005540 0.0e+00 2464.5 2509 61.5
FAN08G1993 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 2460.3 2574 60.6
RcHm_v2.0_Chr2g0105371 Rosa chinensis HOM05D004560 ORTHO05D005540 0.0e+00 2447.2 2465 61.8
FAN18G2522 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 2439.8 2564 60.5
FAN04G2449 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 2439.5 2571 60.3
Ciclev10024681m.g Citrus clementina HOM05D004560 ORTHO05D005540 0.0e+00 2379.7 2502 58.9
CSS0026663 Camellia sinensis var. sinensis HOM05D004560 ORTHO05D005540 0.0e+00 2359.3 2518 60.2
Duzib147G0064 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 2331.6 2510 59.0
Duzib187G0053 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 2316.6 2509 58.3
Potri.005G137700 Populus trichocarpa HOM05D004560 ORTHO05D005540 0.0e+00 2278.4 2494 59.1
Duzib264G0542 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 2261.5 2508 57.8
Gorai.008G075400 Gossypium raimondii HOM05D004560 ORTHO05D005540 0.0e+00 2255.7 2507 56.8
Gohir.D12G068900 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 2226.1 2507 56.3
Gohir.A12G072000 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 2225.7 2512 56.4
Potri.007G043300 Populus trichocarpa HOM05D004560 ORTHO05D005540 0.0e+00 2225.3 2500 57.9
TWI09G1111 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 2206.8 2490 58.0
Manes.12G101400 Manihot esculenta HOM05D004560 ORTHO05D005540 0.0e+00 2186.0 2506 57.4
Sabra05G0109900 Salix brachista HOM05D004560 ORTHO05D005540 0.0e+00 2181.0 2488 56.5
Manes.12G101200 Manihot esculenta HOM05D004560 ORTHO05D005540 0.0e+00 2140.9 2523 56.0
TWI73G0239 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 2133.6 2498 56.4
TAR376G0591 Trochodendron aralioides HOM05D004560 ORTHO05D005540 0.0e+00 2119.7 2551 55.3
Lj4g0000036 Lotus japonicus HOM05D004560 ORTHO05D005540 0.0e+00 2117.8 2527 54.8
Gohir.D12G068700 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 2114.0 2510 55.6
TWI53G0832 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 2112.8 2494 55.9
Gorai.008G075200 Gossypium raimondii HOM05D004560 ORTHO05D005540 0.0e+00 2112.4 2510 55.6
ClCG01G016790 Citrullus lanatus HOM05D004560 ORTHO05D005540 0.0e+00 2108.2 2486 55.8
Gohir.A12G070800 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 2107.4 2511 55.1
Actinidia03789 Actinidia chinensis HOM05D004560 ORTHO05D005540 0.0e+00 2106.6 2508 56.0
Sabra07G0038200 Salix brachista HOM05D004560 ORTHO05D005540 0.0e+00 2097.8 2498 55.8
arahy.Tifrunner.gnm1.ann1.TDMJ0N Arachis hypogaea HOM05D004560 ORTHO05D005540 0.0e+00 2093.2 2516 55.4
arahy.Tifrunner.gnm1.ann1.IC24VR Arachis hypogaea HOM05D004560 ORTHO05D005540 0.0e+00 2073.9 2514 55.1
VMungo0251G0843 Vigna mungo HOM05D004560 ORTHO05D005540 0.0e+00 2073.1 2498 54.9
Phvul.003G244225 Phaseolus vulgaris HOM05D004560 ORTHO05D005540 0.0e+00 2063.9 2498 54.5
Glyma.17G175000 Glycine max HOM05D004560 ORTHO05D005540 0.0e+00 2048.5 2507 54.5
COL.COLO4_11405 Corchorus olitorius HOM05D004560 ORTHO05D005540 0.0e+00 2046.2 2501 54.8
Nn1g04868 Nelumbo nucifera HOM05D004560 ORTHO05D005540 0.0e+00 2037.3 2544 53.9
Ca_19501_v3 Cicer arietinum L. HOM05D004560 ORTHO05D005540 0.0e+00 2018.4 2514 54.3
GSVIVG01022139001 Vitis vinifera HOM05D004560 ORTHO05D005540 0.0e+00 2017.7 2454 54.6
CSS0033893 Camellia sinensis var. sinensis HOM05D004560 ORTHO05D005540 0.0e+00 2010.7 2187 59.5
CsaV3_6G043220 Cucumis sativus L. HOM05D004560 ORTHO05D005540 0.0e+00 1981.1 2492 54.2
Eucgr.I00932 Eucalyptus grandis HOM05D004560 ORTHO05D005540 0.0e+00 1970.7 2498 54.0
TPR.G10251 Trifolium pratense HOM05D004560 ORTHO05D005540 0.0e+00 1970.3 2529 53.0
MBI02_g02993_MAGBIO Magnolia biondii HOM05D004560 ORTHO05D005540 0.0e+00 1966.0 2528 52.3
Psat4g089080 Pisum sativum HOM05D004560 ORTHO05D005540 0.0e+00 1961.4 2539 50.6
Lalb_Chr16g0378501 Lupinus albus HOM05D004560 ORTHO05D005540 0.0e+00 1938.7 2495 52.5
CAN.G836.79 Capsicum annuum HOM05D004560 ORTHO05D005540 0.0e+00 1927.5 2512 52.0
Glyma.05G096000 Glycine max HOM05D004560 ORTHO05D005540 0.0e+00 1918.3 2495 52.3
Nitab4.5_0002016g0010 Nicotiana tabacum HOM05D004560 ORTHO05D005540 0.0e+00 1912.9 2509 51.3
TAR381G0340 Trochodendron aralioides HOM05D004560 ORTHO05D005540 0.0e+00 1908.6 2521 52.6
Nitab4.5_0001034g0140 Nicotiana tabacum HOM05D004560 ORTHO05D005540 0.0e+00 1897.1 2518 51.1
Sopen02g035390 Solanum pennellii HOM05D004560 ORTHO05D005540 0.0e+00 1894.8 2490 52.0
Nn5g30326 Nelumbo nucifera HOM05D004560 ORTHO05D005540 0.0e+00 1891.7 2309 55.0
vmacro17949 Vaccinium macrocarpon HOM05D004560 ORTHO05D005540 0.0e+00 1876.7 2474 53.2
Lj7A70T81 Lonicera japonica HOM05D004560 ORTHO05D005540 0.0e+00 1870.5 2523 52.3
Sed0025145 Sechium edule HOM05D004560 ORTHO05D005540 0.0e+00 1869.7 2485 51.9
Aqoxy5G01239 Aquilegia oxysepala HOM05D004560 ORTHO05D005540 0.0e+00 1857.4 2538 50.7
Lalb_Chr09g0323121 Lupinus albus HOM05D004560 ORTHO05D005540 0.0e+00 1850.1 2490 51.4
Rhsim08G0100900 Rhododendron simsii HOM05D004560 ORTHO05D005540 0.0e+00 1848.6 2482 53.0
Sed0014897 Sechium edule HOM05D004560 ORTHO05D005540 0.0e+00 1844.3 2487 51.9
Peaxi162Scf00450g00514 Petunia axillaris HOM05D004560 ORTHO05D005540 0.0e+00 1841.6 2633 48.7
Dinv39857 Davidia involucrata HOM05D004560 ORTHO05D005540 0.0e+00 1831.6 2027 58.2
Oeu039071.1 Olea europaea HOM05D004560 ORTHO05D005540 0.0e+00 1800.4 2510 49.2
Solyc02g090760.4 Solanum lycopersicum HOM05D004560 ORTHO05D005540 0.0e+00 1795.0 2379 51.3
Sc03g0001520 Simmondsia chinensis HOM05D004560 ORTHO05D005540 0.0e+00 1793.5 2513 49.7
Haze_15408 Corylus avellana HOM05D004560 ORTHO05D005540 0.0e+00 1764.2 1872 59.0
Lalb_Chr09g0323141 Lupinus albus HOM05D004560 ORTHO05D005540 0.0e+00 1760.3 2501 50.9
PGR031G0319 Punica granatum HOM05D004560 ORTHO05D005540 0.0e+00 1746.1 2508 49.9
Hund13557 Selenicereus undatus HOM05D004560 ORTHO05D005540 0.0e+00 1730.7 2500 48.4
AUR62003874 Chenopodium quinoa HOM05D004560 ORTHO05D005540 0.0e+00 1725.3 2405 48.1
AUR62001937 Chenopodium quinoa HOM05D004560 ORTHO05D005540 0.0e+00 1685.2 2363 48.4
ECA238G3505 Erigeron canadensis HOM05D004560 ORTHO05D005540 0.0e+00 1671.8 2467 48.6
Cc07_g19160 Coffea canephora HOM05D004560 ORTHO05D005540 0.0e+00 1633.6 2490 49.3
EL10Ac4g07947 Beta vulgaris HOM05D004560 ORTHO05D005540 0.0e+00 1570.1 2474 46.1
DCAR_014074 Daucus carota HOM05D004560 ORTHO05D005540 0.0e+00 1568.5 2511 45.8
MSTRG.23750 Avicennia marina HOM05D004560 ORTHO05D005540 0.0e+00 1565.4 2485 46.7
THA.LOC104819234 Tarenaya hassleriana HOM05D004560 ORTHO05D005540 0.0e+00 1560.4 2492 47.4
PSO384G0851 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1539.6 2609 44.5
PSO135G0768 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1506.1 2607 44.6
Lsat_1_v5_gn_2_84180 Lactuca sativa HOM05D004560 ORTHO05D005540 0.0e+00 1487.2 2495 45.9
PSO017G5866 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1480.7 2528 44.6
PSO170G6095 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1422.1 2537 44.0
HanXRQChr14g0448241 Helianthus annuus HOM05D004560 ORTHO05D005540 0.0e+00 1388.2 2450 44.8
Sp5g11810 Schrenkiella parvula HOM05D004560 ORTHO05D005540 0.0e+00 1361.7 2479 44.0
Aa31LG4G18600 Aethionema arabicum HOM05D004560 ORTHO05D005540 0.0e+00 1360.9 2490 43.9
AL5G30500 Arabidopsis lyrata HOM05D004560 ORTHO05D005540 0.0e+00 1337.4 2472 43.2
AT3G50370 Arabidopsis thaliana HOM05D004560 ORTHO05D005540 0.0e+00 1327.4 2414 43.6
HanXRQChr14g0442851 Helianthus annuus HOM05D004560 ORTHO05D005540 0.0e+00 1314.3 2448 43.6
ATR0753G002 Amborella trichopoda HOM05D004560 ORTHO05D005540 0.0e+00 1288.5 2593 42.9
Carub.0005s1668 Capsella rubella HOM05D004560 ORTHO05D005540 0.0e+00 1268.4 2427 42.8
MELO3C007558.2 Cucumis melo HOM05D004560 ORTHO05D005540 0.0e+00 1212.6 1682 52.0
Migut.N01430 Erythranthe guttata HOM05D004560 ORTHO05D005540 0.0e+00 1180.2 2458 41.7
Thhalv10010051m.g Eutrema salsugineum HOM05D004560 ORTHO05D005540 0.0e+00 1171.4 2397 40.6
CARHR159850 Cardamine hirsuta HOM05D004560 ORTHO05D005540 0.0e+00 1159.8 2363 41.5
Oeu003960.1 Olea europaea HOM05D004560 ORTHO05D005540 0.0e+00 1121.7 1740 47.0
TAR628G0564 Trochodendron aralioides HOM05D004560 ORTHO05D005540 0.0e+00 1096.6 1276 55.2
Cpa.g.sc55.157 Carica papaya HOM05D004560 ORTHO05D005540 8.1e-293 1011.9 977 61.7
Atru.chr10.1634 Acer truncatum HOM05D004560 ORTHO05D005540 4.0e-292 1009.6 1051 60.2
Zm00001eb019260 Zea mays HOM05D004560 ORTHO05D005540 4.1e-276 956.4 2498 37.6
Cpa.g.sc55.158 Carica papaya HOM05D004560 ORTHO05D005540 2.6e-275 953.7 1026 61.1
SEGI_38337 Sequoiadendron giganteum HOM05D004560 ORTHO05D005540 5.9e-259 899.4 2731 36.1
BcaB01g00621 Brassica carinata HOM05D004560 ORTHO05D005540 6.1e-256 889.4 2401 37.5
A09p43370 Brassica napus HOM05D004560 ORTHO05D005540 2.0e-251 874.4 2385 37.3
BraA09t39806Z Brassica rapa HOM05D004560 ORTHO05D005540 1.9e-249 867.8 2396 37.4
BcaC07g39495 Brassica carinata HOM05D004560 ORTHO05D005540 3.2e-249 867.1 2393 37.0
C08p25410 Brassica napus HOM05D004560 ORTHO05D005540 3.2e-249 867.1 2393 37.0
BolC8t50162H Brassica oleracea HOM05D004560 ORTHO05D005540 5.3e-244 849.7 2439 36.4
Actinidia16495 Actinidia chinensis HOM05D004560 ORTHO05D005540 9.8e-230 802.4 720 64.0
TAR628G1123 Trochodendron aralioides HOM05D004560 ORTHO05D005540 1.5e-222 778.5 967 54.4
Actinidia16497 Actinidia chinensis HOM05D004560 ORTHO05D005540 3.7e-221 773.9 951 56.0
Haze_15410 Corylus avellana HOM05D004560 ORTHO05D005540 7.8e-187 659.8 568 65.8
HPP92_004113 Vanilla planifolia HOM05D004560 ORTHO05D005540 1.3e-186 659.1 2539 31.8
CDE04G1181 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 8.7e-178 629.8 1914 35.8
CDE08G0981 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 2.1e-168 598.6 1779 32.3
FAN04G2556 Fragaria x ananassa HOM05D004560 ORTHO05D005540 1.2e-150 539.7 676 53.4
PGSC0003DMG400004537 Solanum tuberosum HOM05D004560 ORTHO05D005540 3.0e-146 525.0 451 62.3
Dinv39858 Davidia involucrata HOM05D004560 ORTHO05D005540 1.1e-143 516.5 504 58.5
Os03g0395600 Oryza sativa ssp. japonica HOM05D004560 ORTHO05D005540 2.6e-137 495.4 786 44.7
SHI34246 Sapria himalayana HOM05D004560 ORTHO05D005540 1.0e-133 483.4 1804 34.6
unitig_736.g22379 Utricularia gibba HOM05D004560 ORTHO05D005540 8.8e-130 470.3 1319 37.2
unitig_736.g22380 Utricularia gibba HOM05D004560 ORTHO05D005540 2.7e-123 448.7 933 39.1
Mapoly0121s0051 Marchantia polymorpha HOM05D004560 ORTHO05D005540 1.0e-106 393.7 2847 28.6
HPP92_004075 Vanilla planifolia HOM05D004560 ORTHO05D005540 3.5e-102 378.6 1220 32.6
Psat2g096520 Pisum sativum HOM05D004560 ORTHO05D005540 6.4e-88 331.3 288 60.1
unitig_899.g14936 Utricularia gibba HOM05D004560 ORTHO05D005540 8.6e-85 320.9 973 33.5
Pp3c7_3230 Physcomitrium patens HOM05D004560 ORTHO05D005540 2.5e-84 319.3 2787 28.9
RcHm_v2.0_Chr2g0145051 Rosa chinensis HOM05D004560 ORTHO05D005540 4.9e-72 278.5 257 64.2
RcHm_v2.0_Chr4g0416641 Rosa chinensis HOM05D004560 ORTHO05D005540 4.2e-71 275.4 257 63.8
HPP92_004077 Vanilla planifolia HOM05D004560 ORTHO05D005540 4.3e-68 265.4 1036 34.4
SHI34241 Sapria himalayana HOM05D000030 ORTHO05D000009 3.9e-61 242.3 567 35.8
Sed0026550 Sechium edule HOM05D004560 ORTHO05D005540 6.9e-58 231.5 503 40.4
Cpa.g.sc55.156 Carica papaya HOM05D004560 ORTHO05D005540 2.0e-57 229.9 227 59.0
Pp3c11_18520 Physcomitrium patens HOM05D004560 ORTHO05D005540 2.6e-57 229.6 2789 26.7
unitig_899.g14935 Utricularia gibba HOM05D004560 ORTHO05D005540 2.8e-51 209.5 443 37.2
Pp3c11_18522 Physcomitrium patens HOM05D004560 ORTHO05D005540 4.8e-51 208.8 2780 26.5
SMO340G0113 Selaginella moellendorffii HOM05D004560 ORTHO05D005540 9.0e-50 204.5 2378 26.2
CDE08G0295 Ceratophyllum demersum HOM05D006253 ORTHO05D007666 6.7e-45 188.3 537 33.5
unitig_899.g14938 Utricularia gibba HOM05D004560 ORTHO05D005540 8.2e-43 181.4 314 40.8
Psat3g009840 Pisum sativum HOM05D004560 ORTHO05D005540 7.4e-36 158.3 203 48.8
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 2.8e-35 156.4 188 50.0
Rhsim08G0115000 Rhododendron simsii HOM05D000030 ORTHO05D000009 7.2e-31 141.7 301 36.5
AagrBONN_evm.TU.Sc2ySwM_228.1624 Anthoceros agrestis HOM05D004560 ORTHO05D005540 3.7e-27 129.4 2108 26.0
CDE04G1185 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 5.5e-23 115.5 260 40.4
Psat1g018440 Pisum sativum HOM05D004560 ORTHO05D005540 3.7e-19 102.8 64 79.7
unitig_899.g14937 Utricularia gibba HOM05D004560 ORTHO05D005540 2.4e-18 100.1 312 31.4
Psat5g208000 Pisum sativum HOM05D004560 ORTHO05D005540 1.6e-17 97.4 61 78.7
EL10Ac9g22827 Beta vulgaris HOM05D004560 ORTHO05D005540 4.5e-17 95.9 147 49.0
RcHm_v2.0_Chr2g0105361 Rosa chinensis HOM05D004560 ORTHO05D037471 5.0e-16 92.4 79 67.1
Oeu003961.1 Olea europaea HOM05D004560 ORTHO05D005540 2.7e-14 86.7 123 43.1
Psat2g096560 Pisum sativum HOM05D001260 ORTHO05D004134 1.8e-13 84.0 118 45.8
Actinidia16496 Actinidia chinensis HOM05D004560 ORTHO05D005540 2.4e-10 73.6 199 36.2
SHI34242 Sapria himalayana HOM05D004560 ORTHO05D005540 9.1e-10 71.6 82 53.7
CBR_g34112 Chara braunii HOM05D000019 ORTHO05D137378 3.5e-09 69.7 58 58.6
Psat2g096600 Pisum sativum HOM05D004560 ORTHO05D005540 7.2e-07 62.0 95 45.3


User provided reference genes

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