Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G1518 Cannabis sativa HOM05D008443 ORTHO05D010587 8.4e-45 183.3 94 100.0
Duzib268G1406 Durio zibethinus HOM05D008443 ORTHO05D010587 1.9e-17 92.4 78 70.5
Manes.01G198240 Manihot esculenta HOM05D008443 ORTHO05D010587 9.7e-17 90.1 67 76.1
Gohir.A05G318400 Gossypium hirsutum HOM05D008443 ORTHO05D010587 1.1e-15 86.7 67 77.6
Manes.05G088700 Manihot esculenta HOM05D008443 ORTHO05D010587 1.8e-15 85.9 67 71.6
Gorai.005G184100 Gossypium raimondii HOM05D008443 ORTHO05D010587 2.4e-15 85.5 82 62.2
Gohir.D05G320600 Gossypium hirsutum HOM05D008443 ORTHO05D010587 1.2e-14 83.2 69 69.6
CSS0001689 Camellia sinensis var. sinensis HOM05D008443 ORTHO05D010587 2.0e-14 82.4 64 71.9
Gohir.A03G141200 Gossypium hirsutum HOM05D008443 ORTHO05D010587 2.0e-14 82.4 72 62.5
Gohir.D02G164100 Gossypium hirsutum HOM05D008443 ORTHO05D010587 4.5e-14 81.3 71 63.4
QL03p061920 Quercus lobata HOM05D008443 ORTHO05D010587 5.9e-14 80.9 66 69.7
Nn3g16936 Nelumbo nucifera HOM05D008443 ORTHO05D010587 2.2e-13 79.0 61 70.5
CiPaw.05G147800 Carya illinoinensis HOM05D008443 ORTHO05D010587 2.9e-13 78.6 62 69.4
Gorai.009G343700 Gossypium raimondii HOM05D008443 ORTHO05D010587 2.9e-13 78.6 70 65.7
TWI36G1347 Tripterygium wilfordii HOM05D008443 ORTHO05D010587 2.9e-13 78.6 77 61.0
Prupe.1G256700 Prunus persica HOM05D008443 ORTHO05D010587 3.8e-13 78.2 52 76.9
MD16G1089300 Malus domestica HOM05D008443 ORTHO05D010587 5.0e-13 77.8 51 78.4
ClCG05G025160 Citrullus lanatus HOM05D008443 ORTHO05D010587 1.1e-12 76.6 84 56.0
MBI15_g19742_MAGBIO Magnolia biondii HOM05D008443 ORTHO05D010587 2.5e-12 75.5 51 74.5
Eucgr.B03356 Eucalyptus grandis HOM05D008443 ORTHO05D010587 1.2e-11 73.2 76 57.9
PGR102G0936 Punica granatum HOM05D008443 ORTHO05D010587 1.2e-11 73.2 62 64.5
MD13G1089100 Malus domestica HOM05D008443 ORTHO05D010587 2.7e-11 72.0 79 53.2
VMungo0251G0489 Vigna mungo HOM05D008443 ORTHO05D010587 6.1e-11 70.9 83 47.0
Aqoxy3G03049 Aquilegia oxysepala HOM05D008443 ORTHO05D010587 1.0e-10 70.1 68 57.4
CsaV3_5G031740 Cucumis sativus L. HOM05D008443 ORTHO05D010587 1.0e-10 70.1 75 57.3
MSTRG.2385 Avicennia marina HOM05D008443 ORTHO05D010587 2.3e-10 68.9 79 50.6
MELO3C012013.2 Cucumis melo HOM05D008443 ORTHO05D010587 2.3e-10 68.9 69 58.0
TPR.G35976 Trifolium pratense HOM05D008443 ORTHO05D010587 2.3e-10 68.9 71 57.7
Phvul.003G053700 Phaseolus vulgaris HOM05D008443 ORTHO05D010587 3.9e-10 68.2 65 53.8
Dinv31086 Davidia involucrata HOM05D000086 ORTHO05D000983 5.1e-10 67.8 53 67.9
Rhsim12G0048000 Rhododendron simsii HOM05D008443 ORTHO05D010587 6.7e-10 67.4 59 61.0
TAR629G3213 Trochodendron aralioides HOM05D008443 ORTHO05D010587 8.8e-10 67.0 79 53.2
FAN17G0561 Fragaria x ananassa HOM05D008443 ORTHO05D010587 1.1e-09 66.6 56 62.5
FAN22G1825 Fragaria x ananassa HOM05D008443 ORTHO05D010587 2.0e-09 65.9 48 66.7
RcHm_v2.0_Chr4g0444191 Rosa chinensis HOM05D008443 ORTHO05D010587 2.0e-09 65.9 48 68.8
Medtr8g063410 Medicago truncatula HOM05D008443 ORTHO05D010587 2.5e-09 65.5 53 64.2
Glyma.18G135000 Glycine max HOM05D008443 ORTHO05D010587 4.3e-09 64.7 68 52.9
Lalb_Chr16g0382381 Lupinus albus HOM05D008443 ORTHO05D010587 5.7e-09 64.3 64 54.7
Glyma.08G289300 Glycine max HOM05D008443 ORTHO05D010587 9.7e-09 63.5 68 51.5
Lsat_1_v5_gn_3_47940 Lactuca sativa HOM05D008443 ORTHO05D010587 2.2e-08 62.4 75 52.0
CDE07G0196 Ceratophyllum demersum HOM05D008443 ORTHO05D010587 2.8e-08 62.0 62 56.5
AUR62013990 Chenopodium quinoa HOM05D008443 ORTHO05D010587 6.3e-08 60.8 65 53.8
Dinv24885 Davidia involucrata HOM05D000086 ORTHO05D000983 6.3e-08 60.8 51 66.7
Aa31LG7G7790 Aethionema arabicum HOM05D009339 ORTHO05D011480 2.4e-07 58.9 52 55.8
ATR1149G093 Amborella trichopoda HOM05D008443 ORTHO05D010587 2.4e-07 58.9 74 44.6
THA.LOC109117024 Tarenaya hassleriana HOM05D009339 ORTHO05D011480 2.4e-07 58.9 70 47.1
Sc11g0001310 Simmondsia chinensis HOM05D008443 ORTHO05D010587 3.1e-07 58.5 70 48.6
Haze_07480 Corylus avellana HOM05D008443 ORTHO05D010587 5.3e-07 57.8 58 50.0
Os08g0414500 Oryza sativa ssp. japonica HOM05D040179 ORTHO05D037189 5.3e-07 57.8 69 49.3
BcaB03g14788 Brassica carinata HOM05D009339 ORTHO05D011480 6.9e-07 57.4 61 50.8
AT1G70270 Arabidopsis thaliana HOM05D009339 ORTHO05D011480 9.1e-07 57.0 54 51.9
Cfa019086 Carpinus fangiana HOM05D008443 ORTHO05D010587 9.1e-07 57.0 78 44.9
BcaC03g15173 Brassica carinata HOM05D009339 ORTHO05D011480 1.2e-06 56.6 51 56.9
C02p27480 Brassica napus HOM05D009339 ORTHO05D011480 1.2e-06 56.6 51 56.9
BolC2t08807H Brassica oleracea HOM05D009339 ORTHO05D011480 1.2e-06 56.6 51 56.9
BraA02t06702Z Brassica rapa HOM05D009339 ORTHO05D011480 1.2e-06 56.6 51 56.9
BcaC08g45823 Brassica carinata HOM05D009339 ORTHO05D011480 2.0e-06 55.8 51 56.9
BolC6t38735H Brassica oleracea HOM05D009339 ORTHO05D011480 2.0e-06 55.8 51 56.9
DCAR_031087 Daucus carota HOM05D008443 ORTHO05D010587 2.0e-06 55.8 48 66.7
Thhalv10019382m.g Eutrema salsugineum HOM05D009339 ORTHO05D011480 2.0e-06 55.8 66 50.0
Sed0013077 Sechium edule HOM05D033138 ORTHO05D010587 2.6e-06 55.5 68 45.6
C06p36170 Brassica napus HOM05D009339 ORTHO05D011480 3.4e-06 55.1 51 56.9
BcaB05g24544 Brassica carinata HOM05D009339 ORTHO05D011480 5.9e-06 54.3 51 54.9
A02p16430 Brassica napus HOM05D009339 ORTHO05D011480 5.9e-06 54.3 50 56.0
AL2G29560 Arabidopsis lyrata HOM05D009339 ORTHO05D011480 7.7e-06 53.9 54 51.9
Sp5g25380 Schrenkiella parvula HOM05D009339 ORTHO05D011480 7.7e-06 53.9 50 56.0


User provided reference genes

Program Settings