Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G1482 Cannabis sativa HOM05D007293 ORTHO05D009143 4.0e-48 194.5 104 100.0
Prupe.1G253900 Prunus persica HOM05D007293 ORTHO05D009143 9.0e-24 113.6 105 65.7
MD16G1092500 Malus domestica HOM05D007293 ORTHO05D009143 4.5e-23 111.3 105 65.7
MD13G1091900 Malus domestica HOM05D007293 ORTHO05D009143 1.0e-22 110.2 105 63.8
FAN22G1529 Fragaria x ananassa HOM05D007293 ORTHO05D009143 1.3e-22 109.8 105 63.8
FAN17G1887 Fragaria x ananassa HOM05D007293 ORTHO05D009143 2.2e-22 109.0 105 63.8
FAN12G1260 Fragaria x ananassa HOM05D007293 ORTHO05D009143 3.8e-22 108.2 105 63.8
FvH4_4g34460 Fragaria vesca HOM05D007293 ORTHO05D009143 8.4e-22 107.1 105 62.9
RcHm_v2.0_Chr4g0443851 Rosa chinensis HOM05D007293 ORTHO05D009143 1.9e-21 105.9 104 61.5
RcHm_v2.0_Chr4g0443841 Rosa chinensis HOM05D007293 ORTHO05D009143 2.5e-21 105.5 108 63.9
Atru.chr11.2025 Acer truncatum HOM05D007293 ORTHO05D009143 2.7e-20 102.1 106 63.2
CiPaw.05G150900 Carya illinoinensis HOM05D007293 ORTHO05D009143 2.7e-20 102.1 105 61.9
ClCG08G018060 Citrullus lanatus HOM05D007293 ORTHO05D009143 6.1e-20 100.9 109 57.8
TWI75G0451 Tripterygium wilfordii HOM05D007293 ORTHO05D009143 6.1e-20 100.9 107 59.8
Prupe.5G015600 Prunus persica HOM05D007293 ORTHO05D009143 3.0e-19 98.6 103 60.2
Thecc.02G249100 Theobroma cacao HOM05D007293 ORTHO05D009143 6.7e-19 97.4 104 58.7
Ciclev10033010m.g Citrus clementina HOM05D007293 ORTHO05D009143 1.5e-18 96.3 106 59.4
Cfa009144 Carpinus fangiana HOM05D007293 ORTHO05D009143 3.3e-18 95.1 108 58.3
PGR119G0124 Punica granatum HOM05D007293 ORTHO05D009143 3.3e-18 95.1 106 57.5
THA.LOC104808972 Tarenaya hassleriana HOM05D007293 ORTHO05D009143 1.3e-17 93.2 106 57.5
Manes.13G030700 Manihot esculenta HOM05D007293 ORTHO05D009143 6.3e-17 90.9 113 54.9
Duzib251G0045 Durio zibethinus HOM05D007293 ORTHO05D009143 1.4e-16 89.7 100 54.0
Duzib268G1575 Durio zibethinus HOM05D007293 ORTHO05D009143 1.4e-16 89.7 104 53.8
THA.LOC104822141 Tarenaya hassleriana HOM05D007293 ORTHO05D009143 5.3e-16 87.8 105 56.2
Psat0s2875g0160 Pisum sativum HOM05D007293 ORTHO05D009143 6.9e-16 87.4 105 54.3
Gohir.D02G162700 Gossypium hirsutum HOM05D007293 ORTHO05D009143 1.2e-15 86.7 104 51.9
Gorai.005G182700 Gossypium raimondii HOM05D007293 ORTHO05D009143 1.2e-15 86.7 104 51.9
COL.COLO4_36768 Corchorus olitorius HOM05D007293 ORTHO05D009143 1.5e-15 86.3 98 54.1
Gohir.A03G139900 Gossypium hirsutum HOM05D007293 ORTHO05D009143 1.5e-15 86.3 104 51.9
Psat2g106240 Pisum sativum HOM05D007293 ORTHO05D009143 1.5e-15 86.3 105 53.3
BcaC08g45820 Brassica carinata HOM05D007293 ORTHO05D009143 4.5e-15 84.7 104 51.9
CsaV3_4G037870 Cucumis sativus L. HOM05D001719 ORTHO05D008883 7.7e-15 84.0 102 52.9
Thhalv10019350m.g Eutrema salsugineum HOM05D007293 ORTHO05D009143 7.7e-15 84.0 106 53.8
Lj2g0011400 Lotus japonicus HOM05D007293 ORTHO05D009143 7.7e-15 84.0 109 54.1
Lalb_Chr09g0326381 Lupinus albus HOM05D007293 ORTHO05D009143 7.7e-15 84.0 107 56.1
TPR.G13591 Trifolium pratense HOM05D007293 ORTHO05D009143 1.7e-14 82.8 105 53.3
Haze_12178 Corylus avellana HOM05D007293 ORTHO05D009143 2.2e-14 82.4 107 53.3
Eucgr.H02610 Eucalyptus grandis HOM05D007293 ORTHO05D009143 2.2e-14 82.4 114 50.9
AT1G70350 Arabidopsis thaliana HOM05D007293 ORTHO05D009143 3.8e-14 81.6 106 52.8
QL03p061237 Quercus lobata HOM05D007293 ORTHO05D009143 6.5e-14 80.9 108 53.7
AL2G29660 Arabidopsis lyrata HOM05D007293 ORTHO05D009143 1.1e-13 80.1 106 50.9
Carub.0002s1704 Capsella rubella HOM05D007293 ORTHO05D009143 1.1e-13 80.1 106 50.9
Phvul.002G071600 Phaseolus vulgaris HOM05D007293 ORTHO05D009143 1.9e-13 79.3 107 52.3
Glyma.02G034600 Glycine max HOM05D007293 ORTHO05D009143 2.5e-13 79.0 105 52.4
Sp5g25470 Schrenkiella parvula HOM05D007293 ORTHO05D009143 2.5e-13 79.0 106 50.0
Migut.K01369 Erythranthe guttata HOM05D007293 ORTHO05D009143 4.2e-13 78.2 109 55.0
Hund05995 Selenicereus undatus HOM05D007293 ORTHO05D009143 5.5e-13 77.8 113 48.7
EL10Ac6g13673 Beta vulgaris HOM05D007293 ORTHO05D009143 9.4e-13 77.0 112 52.7
BolC6t38732H Brassica oleracea HOM05D007293 ORTHO05D009143 1.2e-12 76.6 98 50.0
Dinv33495 Davidia involucrata HOM05D007293 ORTHO05D009143 1.2e-12 76.6 111 49.5
BcaB03g15542 Brassica carinata HOM05D007293 ORTHO05D009143 1.6e-12 76.3 107 52.3
CARHR063530 Cardamine hirsuta HOM05D007293 ORTHO05D009143 2.1e-12 75.9 106 50.0
FAN07G2443 Fragaria x ananassa HOM05D007293 ORTHO05D009143 2.1e-12 75.9 89 58.4
Lj7A591G78 Lonicera japonica HOM05D007293 ORTHO05D009143 2.1e-12 75.9 109 47.7
BcaB05g24561 Brassica carinata HOM05D007293 ORTHO05D009143 2.7e-12 75.5 106 50.0
C06p36130 Brassica napus HOM05D007293 ORTHO05D009143 4.6e-12 74.7 98 49.0
Ca_13998_v3 Cicer arietinum L. HOM05D007293 ORTHO05D009143 6.1e-12 74.3 102 52.0
TPR.G13583 Trifolium pratense HOM05D007293 ORTHO05D009143 6.1e-12 74.3 110 48.2
BcaC03g15179 Brassica carinata HOM05D007293 ORTHO05D009143 7.9e-12 73.9 107 52.3
Migut.H00123 Erythranthe guttata HOM05D007293 ORTHO05D009143 1.0e-11 73.6 109 50.5
CSS0045153 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 1.8e-11 72.8 105 48.6
Medtr5g034340 Medicago truncatula HOM05D007293 ORTHO05D009143 2.3e-11 72.4 104 51.0
MSTRG.24016 Avicennia marina HOM05D007293 ORTHO05D009143 3.0e-11 72.0 107 49.5
C02p27590 Brassica napus HOM05D007293 ORTHO05D009143 1.1e-10 70.1 106 50.9
arahy.Tifrunner.gnm1.ann1.HDCN36 Arachis hypogaea HOM05D007293 ORTHO05D009143 1.5e-10 69.7 102 51.0
A02p16490 Brassica napus HOM05D007293 ORTHO05D009143 2.5e-10 68.9 106 50.9
BraA02t06707Z Brassica rapa HOM05D007293 ORTHO05D009143 2.5e-10 68.9 106 50.9
CSS0015603 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 3.3e-10 68.6 108 45.4
HanXRQChr08g0220621 Helianthus annuus HOM05D007293 ORTHO05D009143 3.3e-10 68.6 68 55.9
AUR62014041 Chenopodium quinoa HOM05D007293 ORTHO05D009143 5.7e-10 67.8 106 50.9
Sc04g0009130 Simmondsia chinensis HOM05D007293 ORTHO05D009143 7.4e-10 67.4 100 48.0
arahy.Tifrunner.gnm1.ann1.F37JRW Arachis hypogaea HOM05D007293 ORTHO05D009143 9.7e-10 67.0 102 50.0
Aqoxy3G02974 Aquilegia oxysepala HOM05D007293 ORTHO05D009143 1.7e-09 66.2 110 47.3
A07p31100 Brassica napus HOM05D007293 ORTHO05D009143 2.2e-09 65.9 101 47.5
BraA07t30744Z Brassica rapa HOM05D007293 ORTHO05D009143 2.2e-09 65.9 101 47.5
CSS0040497 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 2.2e-09 65.9 105 45.7
Nn3g16892 Nelumbo nucifera HOM05D007293 ORTHO05D009143 2.2e-09 65.9 47 72.3
Dinv35058 Davidia involucrata HOM05D007293 ORTHO05D009143 2.8e-09 65.5 110 43.6
Cc07_g02290 Coffea canephora HOM05D007293 ORTHO05D009143 6.3e-09 64.3 100 47.0
Oeu062917.1 Olea europaea HOM05D007293 ORTHO05D009143 6.3e-09 64.3 104 48.1
Lsat_1_v5_gn_4_182280 Lactuca sativa HOM05D007293 ORTHO05D009143 8.2e-09 63.9 114 44.7
Medtr5g034360 Medicago truncatula HOM05D007293 ORTHO05D009143 8.2e-09 63.9 54 66.7
BolC2t08814H Brassica oleracea HOM05D007293 ORTHO05D009143 1.1e-08 63.5 106 47.2
AUR62005378 Chenopodium quinoa HOM05D007293 ORTHO05D009143 1.1e-08 63.5 102 49.0
CDE06G2495 Ceratophyllum demersum HOM05D007293 ORTHO05D009143 1.4e-08 63.2 73 54.8
ECA246G2262 Erigeron canadensis HOM05D007293 ORTHO05D009143 1.4e-08 63.2 49 67.3
HPP92_019952 Vanilla planifolia HOM05D007293 ORTHO05D009143 1.8e-08 62.8 50 64.0
GSVIVG01032483001 Vitis vinifera HOM05D007293 ORTHO05D009143 1.8e-08 62.8 116 43.1
VMungo1215G2593 Vigna mungo HOM05D007293 ORTHO05D009143 2.4e-08 62.4 102 47.1
vmacro05819 Vaccinium macrocarpon HOM05D007293 ORTHO05D009143 3.1e-08 62.0 104 46.2
TAR622G0242 Trochodendron aralioides HOM05D007293 ORTHO05D009143 6.9e-08 60.8 106 44.3
DCAR_011205 Daucus carota HOM05D007293 ORTHO05D009143 1.5e-07 59.7 108 41.7
Actinidia06026 Actinidia chinensis HOM05D007293 ORTHO05D009143 5.9e-07 57.8 46 67.4
Rhsim10G0022800 Rhododendron simsii HOM05D007293 ORTHO05D009143 7.7e-07 57.4 104 43.3
Os01g0738000 Oryza sativa ssp. japonica HOM05D007293 ORTHO05D009143 1.0e-06 57.0 106 41.5
PSO063G5020 Papaver somniferum HOM05D007293 ORTHO05D009143 1.0e-06 57.0 98 43.9
CDE04G1122 Ceratophyllum demersum HOM05D007293 ORTHO05D009143 3.8e-06 55.1 101 45.5
SalBow1G2453 Salvia bowleyana HOM05D005882 ORTHO05D009143 3.8e-06 55.1 99 46.5
BcaB07g33183 Brassica carinata HOM05D027076 ORTHO05D027107 6.5e-06 54.3 83 47.0


User provided reference genes

Program Settings