Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G1475 Cannabis sativa HOM05D006319 ORTHO05D007963 1.5e-130 469.5 241 100.0
Prupe.4G276300 Prunus persica HOM05D006319 ORTHO05D007963 4.6e-79 298.5 236 68.6
Thecc.01G138200 Theobroma cacao HOM05D006319 ORTHO05D007963 1.5e-77 293.5 222 69.4
Atru.chr4.1000 Acer truncatum HOM05D006319 ORTHO05D007963 2.5e-77 292.7 241 62.7
Duzib187G0662 Durio zibethinus HOM05D006319 ORTHO05D007963 6.2e-76 288.1 219 69.9
Dinv05221 Davidia involucrata HOM05D006319 ORTHO05D007963 2.4e-75 286.2 248 63.3
Eucgr.H05122 Eucalyptus grandis HOM05D006319 ORTHO05D007963 5.2e-75 285.0 215 70.7
Potri.007G100800 Populus trichocarpa HOM05D006319 ORTHO05D007963 5.2e-75 285.0 224 66.5
Hma1.2p1_0236F.1_g099250 Hydrangea macrophylla HOM05D006319 ORTHO05D007963 8.9e-75 284.3 238 64.7
COL.COLO4_35821 Corchorus olitorius HOM05D006319 ORTHO05D007963 3.4e-74 282.3 185 77.3
GSVIVG01022331001 Vitis vinifera HOM05D006319 ORTHO05D007963 9.9e-74 280.8 220 67.7
CiPaw.04G079200 Carya illinoinensis HOM05D006319 ORTHO05D007963 1.1e-72 277.3 240 63.3
Ciclev10002322m.g Citrus clementina HOM05D006319 ORTHO05D007963 1.4e-72 276.9 193 74.1
MELO3C023216.2 Cucumis melo HOM05D006319 ORTHO05D007963 1.4e-72 276.9 193 73.6
QL10p041175 Quercus lobata HOM05D006319 ORTHO05D007963 3.2e-72 275.8 209 68.4
TWI31G0926 Tripterygium wilfordii HOM05D006319 ORTHO05D007963 4.2e-72 275.4 198 73.7
CSS0021790 Camellia sinensis var. sinensis HOM05D006319 ORTHO05D007963 5.4e-72 275.0 224 62.5
ClCG02G000280 Citrullus lanatus HOM05D005757 ORTHO05D007090 5.4e-72 275.0 194 73.7
MD01G1000300 Malus domestica HOM05D006319 ORTHO05D007963 7.1e-72 274.6 207 70.0
Gorai.011G118400 Gossypium raimondii HOM05D006319 ORTHO05D007963 1.2e-71 273.9 223 67.7
PGR102G0633 Punica granatum HOM05D006319 ORTHO05D007963 1.2e-71 273.9 193 73.6
Nn1g08971 Nelumbo nucifera HOM05D006319 ORTHO05D007963 3.5e-71 272.3 217 68.2
Lj7A582T32 Lonicera japonica HOM05D006319 ORTHO05D007963 6.0e-71 271.6 167 81.4
Manes.12G159300 Manihot esculenta HOM05D006319 ORTHO05D007963 7.8e-71 271.2 212 68.4
RcHm_v2.0_Chr2g0122611 Rosa chinensis HOM05D006319 ORTHO05D007963 1.7e-70 270.0 218 67.9
CsaV3_2G019570 Cucumis sativus L. HOM05D006319 ORTHO05D007963 2.3e-70 269.6 217 65.9
Lalb_Chr08g0238171 Lupinus albus HOM05D006319 ORTHO05D007963 6.6e-70 268.1 218 63.8
THA.LOC104826346 Tarenaya hassleriana HOM05D006319 ORTHO05D007963 8.7e-70 267.7 241 58.5
Actinidia16521 Actinidia chinensis HOM05D006319 ORTHO05D007963 1.1e-69 267.3 195 72.3
FvH4_1g24980 Fragaria vesca HOM05D006319 ORTHO05D007963 1.5e-69 266.9 239 62.8
TAR628G0979 Trochodendron aralioides HOM05D006319 ORTHO05D007963 1.9e-69 266.5 225 63.6
Glyma.06G156100 Glycine max HOM05D006319 ORTHO05D007963 2.5e-69 266.2 205 69.3
QL10p041464 Quercus lobata HOM05D006319 ORTHO05D007963 3.3e-69 265.8 162 81.5
Cpa.g.sc37.12 Carica papaya HOM05D006319 ORTHO05D007963 9.6e-69 264.2 208 67.8
FAN23G2801 Fragaria x ananassa HOM05D006319 ORTHO05D007963 9.6e-69 264.2 239 62.8
Medtr3g096750 Medicago truncatula HOM05D006319 ORTHO05D007963 2.1e-68 263.1 235 61.7
AUR62000524 Chenopodium quinoa HOM05D006319 ORTHO05D007963 2.4e-67 259.6 205 67.8
VMungo0464G0362 Vigna mungo HOM05D006319 ORTHO05D007963 2.4e-67 259.6 216 63.9
vmacro18688 Vaccinium macrocarpon HOM05D006319 ORTHO05D007963 4.0e-67 258.8 234 61.1
Phvul.009G154200 Phaseolus vulgaris HOM05D006319 ORTHO05D007963 5.3e-67 258.5 213 64.8
Hund07232 Selenicereus undatus HOM05D006319 ORTHO05D007963 5.3e-67 258.5 235 59.6
AUR62006869 Chenopodium quinoa HOM05D006319 ORTHO05D007963 9.0e-67 257.7 194 70.1
Psat5g060360 Pisum sativum HOM05D006319 ORTHO05D007963 1.5e-66 256.9 219 62.6
FAN19G2853 Fragaria x ananassa HOM05D006319 ORTHO05D007963 2.0e-66 256.5 256 59.0
Aqoxy6G00315 Aquilegia oxysepala HOM05D006319 ORTHO05D007963 3.4e-66 255.8 200 68.5
Cc02_g33910 Coffea canephora HOM05D006319 ORTHO05D007963 9.9e-66 254.2 192 72.4
FAN28G2219 Fragaria x ananassa HOM05D006319 ORTHO05D007963 2.2e-65 253.1 257 58.8
DCAR_009594 Daucus carota HOM05D006319 ORTHO05D007963 2.9e-65 252.7 162 78.4
Glyma.04G209900 Glycine max HOM05D006319 ORTHO05D007963 3.8e-65 252.3 211 64.0
Lj1g0009956 Lotus japonicus HOM05D006319 ORTHO05D007963 3.8e-65 252.3 229 60.7
arahy.Tifrunner.gnm1.ann1.7TU5G5 Arachis hypogaea HOM05D006319 ORTHO05D007963 2.4e-64 249.6 191 69.6
MSTRG.23490 Avicennia marina HOM05D006319 ORTHO05D007963 3.2e-64 249.2 195 69.7
BcaB01g03112 Brassica carinata HOM05D006319 ORTHO05D007963 7.1e-64 248.1 239 57.3
Migut.H00824 Erythranthe guttata HOM05D006319 ORTHO05D007963 7.1e-64 248.1 191 68.1
MBI06_g35206_MAGBIO Magnolia biondii HOM05D006319 ORTHO05D007963 2.1e-63 246.5 238 59.2
Sc02g0003550 Simmondsia chinensis HOM05D006319 ORTHO05D007963 2.1e-63 246.5 217 62.2
Nitab4.5_0004105g0090 Nicotiana tabacum HOM05D006319 ORTHO05D007963 2.7e-63 246.1 189 67.2
arahy.Tifrunner.gnm1.ann1.P5PFFU Arachis hypogaea HOM05D006319 ORTHO05D007963 3.5e-63 245.7 191 67.5
arahy.Tifrunner.gnm1.ann1.4SM61H Arachis hypogaea HOM05D006319 ORTHO05D007963 7.9e-63 244.6 193 66.3
Solyc04g009420.3 Solanum lycopersicum HOM05D006319 ORTHO05D007963 7.9e-63 244.6 189 66.7
Sopen04g004550 Solanum pennellii HOM05D006319 ORTHO05D007963 1.0e-62 244.2 189 66.7
PGSC0003DMG400032538 Solanum tuberosum HOM05D006319 ORTHO05D007963 1.3e-62 243.8 189 66.7
EL10Ac4g09632 Beta vulgaris HOM05D006319 ORTHO05D007963 1.7e-62 243.4 194 64.9
Nitab4.5_0013462g0010 Nicotiana tabacum HOM05D006319 ORTHO05D007963 1.7e-62 243.4 189 66.1
BcaB06g28232 Brassica carinata HOM05D006319 ORTHO05D007963 3.9e-62 242.3 191 67.5
CAN.G186.2 Capsicum annuum HOM05D006319 ORTHO05D007963 3.9e-62 242.3 169 72.2
Carub.0004s0957 Capsella rubella HOM05D006319 ORTHO05D007963 5.1e-62 241.9 192 65.6
arahy.Tifrunner.gnm1.ann1.B4AV5R Arachis hypogaea HOM05D006319 ORTHO05D007963 6.6e-62 241.5 191 67.5
A04p21670 Brassica napus HOM05D006319 ORTHO05D007963 6.6e-62 241.5 195 66.7
Thhalv10017176m.g Eutrema salsugineum HOM05D006319 ORTHO05D007963 1.1e-61 240.7 235 58.7
Aa31LG5G7620 Aethionema arabicum HOM05D005759 ORTHO05D007172 4.3e-61 238.8 192 64.6
BcaC01g04984 Brassica carinata HOM05D006319 ORTHO05D007963 4.3e-61 238.8 196 64.3
C03p31420 Brassica napus HOM05D006319 ORTHO05D007963 4.3e-61 238.8 192 65.6
PSO782G1065 Papaver somniferum HOM05D006319 ORTHO05D007963 4.3e-61 238.8 195 63.6
A03p26290 Brassica napus HOM05D006319 ORTHO05D007963 5.6e-61 238.4 229 58.1
BraA04t17731Z Brassica rapa HOM05D006319 ORTHO05D007963 1.3e-60 237.3 195 64.6
AT2G28605 Arabidopsis thaliana HOM05D006319 ORTHO05D007963 2.8e-60 236.1 194 66.0
AL4G23100 Arabidopsis lyrata HOM05D006319 ORTHO05D007963 3.6e-60 235.7 196 64.8
BraA03t11843Z Brassica rapa HOM05D006319 ORTHO05D007963 4.8e-60 235.3 229 57.6
Sp4g11430 Schrenkiella parvula HOM05D006319 ORTHO05D007963 4.8e-60 235.3 240 57.1
CARHR121630 Cardamine hirsuta HOM05D006319 ORTHO05D007963 8.1e-60 234.6 196 64.8
SalBow1G4836 Salvia bowleyana HOM05D006319 ORTHO05D007963 1.1e-59 234.2 164 72.6
BcaC02g08157 Brassica carinata HOM05D006319 ORTHO05D007963 1.8e-59 233.4 195 65.1
C04p57790 Brassica napus HOM05D006319 ORTHO05D007963 1.8e-59 233.4 195 65.1
SGA_v2.0_scaffold273G46467 Striga asiatica HOM05D006319 ORTHO05D007963 2.4e-59 233.0 224 60.3
BolC4t27297H Brassica oleracea HOM05D006319 ORTHO05D007963 3.1e-59 232.6 229 58.5
Eucgr.H02106 Eucalyptus grandis HOM05D006319 ORTHO05D007963 6.9e-59 231.5 215 61.9
Oeu011026.1 Olea europaea HOM05D006319 ORTHO05D007963 1.2e-58 230.7 162 72.2
Zm00001eb422700 Zea mays HOM05D006319 ORTHO05D007963 2.6e-58 229.6 162 69.8
unitig_899.g15151 Utricularia gibba HOM05D006319 ORTHO05D007963 4.5e-58 228.8 195 62.1
HPP92_009279 Vanilla planifolia HOM05D006319 ORTHO05D007963 9.9e-58 227.6 209 56.5
Ah.06g191080 Amaranthus hybridus HOM05D006319 ORTHO05D007963 1.3e-57 227.3 201 61.7
BolC3t15489H Brassica oleracea HOM05D006319 ORTHO05D007963 1.3e-57 227.3 162 69.8
ECA246G1987 Erigeron canadensis HOM05D000001 ORTHO05D000003 2.7e-55 219.5 158 69.0
ATR0584G200 Amborella trichopoda HOM05D006319 ORTHO05D007963 6.0e-55 218.4 256 50.0
CDE08G0565 Ceratophyllum demersum HOM05D006319 ORTHO05D007963 6.0e-55 218.4 196 58.2
arahy.Tifrunner.gnm1.ann1.E0QW5U Arachis hypogaea HOM05D006319 ORTHO05D007963 1.2e-50 204.1 191 61.3
HanXRQChr12g0378071 Helianthus annuus HOM05D006319 ORTHO05D007963 1.5e-50 203.8 181 60.8
Peaxi162Scf00842g00214 Petunia axillaris HOM05D006319 ORTHO05D007963 2.2e-49 199.9 138 71.0
arahy.Tifrunner.gnm1.ann1.GQG991 Arachis hypogaea HOM05D006319 ORTHO05D007963 8.4e-49 198.0 159 65.4
Potri.005G068500 Populus trichocarpa HOM05D006319 ORTHO05D007963 3.2e-48 196.1 192 58.3
Rhsim01G0141500 Rhododendron simsii HOM05D006319 ORTHO05D007963 1.1e-43 181.0 186 52.7
SEGI_06099 Sequoiadendron giganteum HOM05D006319 ORTHO05D007963 2.4e-43 179.9 158 59.5
SEGI_37383 Sequoiadendron giganteum HOM05D006319 ORTHO05D007963 2.4e-43 179.9 158 59.5
Gohir.D10G108000 Gossypium hirsutum HOM05D006319 ORTHO05D007963 1.3e-41 174.1 223 48.9
Lsat_1_v5_gn_5_34560 Lactuca sativa HOM05D006319 ORTHO05D007963 1.3e-41 174.1 190 54.2
Gohir.A10G068160 Gossypium hirsutum HOM05D006319 ORTHO05D007963 1.1e-40 171.0 223 48.0
Pp3c8_18060 Physcomitrium patens HOM05D006319 ORTHO05D007963 1.9e-37 160.2 182 48.9
AagrBONN_evm.TU.Sc2ySwM_228.2950 Anthoceros agrestis HOM05D006319 ORTHO05D007963 8.2e-36 154.8 157 51.0
CBR_g49982 Chara braunii HOM05D006319 ORTHO05D007963 9.4e-32 141.4 165 46.1
SMO117G0258 Selaginella moellendorffii HOM05D006319 ORTHO05D007963 4.6e-31 139.0 169 45.0
TPR.G10777 Trifolium pratense HOM05D006319 ORTHO05D007963 1.0e-30 137.9 82 81.7
FAN23G0464 Fragaria x ananassa HOM05D006319 ORTHO05D007963 5.1e-30 135.6 82 78.0
Ca_16986_v3 Cicer arietinum L. HOM05D001650 ORTHO05D001592 1.1e-29 134.4 94 71.3
Mapoly0092s0018 Marchantia polymorpha HOM05D006319 ORTHO05D007963 4.8e-28 129.0 182 42.3
FAN26G1803 Fragaria x ananassa HOM05D001650 ORTHO05D001592 6.9e-27 125.2 86 75.6
Manes.12G147800 Manihot esculenta HOM05D006319 ORTHO05D007963 4.5e-26 122.5 152 50.7
TPR.G33590 Trifolium pratense HOM05D001650 ORTHO05D001592 2.1e-23 113.6 146 46.6
arahy.Tifrunner.gnm1.ann1.PNID9I Arachis hypogaea HOM05D006319 ORTHO05D007963 2.7e-23 113.2 108 63.0
arahy.Tifrunner.gnm1.ann1.Q7YENP Arachis hypogaea HOM05D006319 ORTHO05D007963 7.9e-23 111.7 110 59.1
arahy.Tifrunner.gnm1.ann1.949H7S Arachis hypogaea HOM05D006319 ORTHO05D007963 5.2e-22 109.0 108 62.0
Cre16.g678851 Chlamydomonas reinhardtii HOM05D006319 ORTHO05D007963 5.2e-22 109.0 178 37.1
Os04g0434900 Oryza sativa ssp. japonica HOM05D006319 ORTHO05D007963 5.3e-19 99.0 70 67.1
AagrBONN_evm.TU.Sc2ySwM_362.516 Anthoceros agrestis HOM05D005157 ORTHO05D006652 2.0e-18 97.1 94 57.4
arahy.Tifrunner.gnm1.ann1.RE08FE Arachis hypogaea HOM05D006319 ORTHO05D007963 5.5e-16 89.0 95 54.7
MCO01G211 Micromonas commoda HOM05D006319 ORTHO05D007963 8.8e-14 81.6 175 34.9
PRCOL_00004434 Prasinoderma coloniale HOM05D006319 ORTHO05D007963 7.0e-11 72.0 117 40.2
arahy.Tifrunner.gnm1.ann1.I50TU7 Arachis hypogaea HOM05D006319 ORTHO05D007963 2.0e-10 70.5 123 36.6
CDE08G0611 Ceratophyllum demersum HOM05D006319 ORTHO05D007963 6.5e-09 65.5 90 46.7
MBI17_g01556_MAGBIO Magnolia biondii HOM05D006319 ORTHO05D007963 4.2e-08 62.8 55 58.2
MBI11_g02539_MAGBIO Magnolia biondii HOM05D006319 ORTHO05D007963 6.1e-07 58.9 83 50.6
VMungo1383G1673 Vigna mungo HOM05D002933 ORTHO05D007742 8.8e-06 55.1 202 24.3


User provided reference genes

Program Settings