Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G1468 Cannabis sativa HOM05D003474 ORTHO05D003971 2.4e-113 412.1 205 100.0
CANSAT01G0924 Cannabis sativa HOM05D003474 ORTHO05D003971 8.9e-108 393.7 205 95.6
QL06p049618 Quercus lobata HOM05D003474 ORTHO05D003971 7.7e-43 177.9 210 48.6
QL06p049587 Quercus lobata HOM05D003474 ORTHO05D003971 1.1e-41 174.1 213 48.8
QL06p049593 Quercus lobata HOM05D003474 ORTHO05D003971 1.1e-41 174.1 213 49.8
QL06p049633 Quercus lobata HOM05D003474 ORTHO05D003971 1.6e-40 170.2 210 47.1
Cfa002670 Carpinus fangiana HOM05D003474 ORTHO05D003971 7.9e-40 167.9 212 47.6
Prupe.6G186100 Prunus persica HOM05D003474 ORTHO05D003971 1.5e-38 163.7 207 45.4
RcHm_v2.0_Chr2g0114461 Rosa chinensis HOM05D003474 ORTHO05D003971 2.0e-38 163.3 215 46.0
RcHm_v2.0_Chr2g0114471 Rosa chinensis HOM05D003474 ORTHO05D003971 2.6e-38 162.9 214 45.8
FvH4_1g20980 Fragaria vesca HOM05D003474 ORTHO05D003971 8.2e-37 157.9 213 46.0
FAN28G0803 Fragaria x ananassa HOM05D003474 ORTHO05D003971 1.8e-36 156.8 213 46.0
Oeu002403.1 Olea europaea HOM05D003474 ORTHO05D003971 1.2e-35 154.1 210 40.0
FAN19G2364 Fragaria x ananassa HOM05D003474 ORTHO05D003971 3.5e-35 152.5 213 45.1
FAN23G2065 Fragaria x ananassa HOM05D003474 ORTHO05D003971 3.5e-35 152.5 213 44.1
CANSAT73G0001 Cannabis sativa HOM05D003474 ORTHO05D003971 5.9e-35 151.8 225 45.8
Oeu056606.1 Olea europaea HOM05D003474 ORTHO05D003971 7.7e-35 151.4 206 42.2
FAN26G3130 Fragaria x ananassa HOM05D003474 ORTHO05D003971 2.9e-34 149.4 213 45.1
TAR381G0511 Trochodendron aralioides HOM05D003474 ORTHO05D003971 2.9e-34 149.4 213 42.7
CiPaw.04G099000 Carya illinoinensis HOM05D003474 ORTHO05D003971 3.8e-34 149.1 215 43.3
CSS0044421 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 8.5e-34 147.9 226 42.0
Potri.007G092300 Populus trichocarpa HOM05D003474 ORTHO05D003971 1.5e-33 147.1 205 43.4
Thecc.01G102400 Theobroma cacao HOM05D003474 ORTHO05D003971 2.5e-33 146.4 217 42.4
Nn1g05334 Nelumbo nucifera HOM05D003474 ORTHO05D003971 3.2e-33 146.0 213 43.2
Nn5g30135 Nelumbo nucifera HOM05D003474 ORTHO05D003971 5.5e-33 145.2 215 42.8
CSS0002095 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 7.2e-33 144.8 226 40.7
Sabra07G0076200 Salix brachista HOM05D003474 ORTHO05D003971 7.2e-33 144.8 209 42.1
Sabra07G0076300 Salix brachista HOM05D003474 ORTHO05D003971 7.2e-33 144.8 209 42.1
Sabra07G0075900 Salix brachista HOM05D003474 ORTHO05D003971 9.4e-33 144.4 209 42.1
Sabra07G0076000 Salix brachista HOM05D003474 ORTHO05D003971 9.4e-33 144.4 209 42.1
CSS0009549 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 2.1e-32 143.3 226 41.6
Cc07_g15300 Coffea canephora HOM05D003474 ORTHO05D003971 2.1e-32 143.3 207 44.0
TWI74G0170 Tripterygium wilfordii HOM05D003474 ORTHO05D003971 3.6e-32 142.5 221 41.2
CiPaw.03G141500 Carya illinoinensis HOM05D003474 ORTHO05D003971 4.7e-32 142.1 219 42.5
Sabra07G0076100 Salix brachista HOM05D003474 ORTHO05D003971 6.1e-32 141.7 209 41.6
Gorai.007G239100 Gossypium raimondii HOM05D003474 ORTHO05D003971 8.0e-32 141.4 203 46.3
CSS0039995 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 1.4e-31 140.6 226 38.9
Cfa002671 Carpinus fangiana HOM05D003474 ORTHO05D003971 1.4e-31 140.6 210 44.3
CSS0038157 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 2.3e-31 139.8 214 44.4
COL.COLO4_09957 Corchorus olitorius HOM05D003474 ORTHO05D003971 3.0e-31 139.4 221 40.7
Potri.005G076100 Populus trichocarpa HOM05D003474 ORTHO05D003971 5.2e-31 138.7 209 41.6
Gohir.A11G201900 Gossypium hirsutum HOM05D003474 ORTHO05D003971 1.5e-30 137.1 217 43.8
Hma1.2p1_0047F.1_g027910 Hydrangea macrophylla HOM05D003474 ORTHO05D003971 2.0e-30 136.7 215 42.3
Gohir.D11G221900 Gossypium hirsutum HOM05D003474 ORTHO05D003971 3.3e-30 136.0 208 43.8
Manes.12G135500 Manihot esculenta HOM05D003474 ORTHO05D003971 5.7e-30 135.2 212 40.1
Peaxi162Scf00611g00012 Petunia axillaris HOM05D003474 ORTHO05D003971 1.7e-29 133.7 204 41.7
CSS0003854 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 3.7e-29 132.5 226 38.9
Ciclev10027277m.g Citrus clementina HOM05D003474 ORTHO05D003971 1.4e-28 130.6 213 40.8
Lj4P889T19 Lonicera japonica HOM05D003474 ORTHO05D003971 1.4e-28 130.6 205 39.5
Duzib187G1721 Durio zibethinus HOM05D003474 ORTHO05D003971 3.1e-28 129.4 219 38.8
AUR62002014 Chenopodium quinoa HOM05D003474 ORTHO05D003971 7.0e-28 128.3 221 36.7
TAR625G0209 Trochodendron aralioides HOM05D003474 ORTHO05D003971 7.0e-28 128.3 184 40.8
PGSC0003DMG400001891 Solanum tuberosum HOM05D003474 ORTHO05D003971 1.6e-27 127.1 206 38.8
AUR62003788 Chenopodium quinoa HOM05D003474 ORTHO05D003971 2.0e-27 126.7 221 36.7
CAN.G441.1 Capsicum annuum HOM05D003474 ORTHO05D003971 2.7e-27 126.3 206 37.4
Atru.chr4.70 Acer truncatum HOM05D003474 ORTHO05D003971 4.5e-27 125.6 237 36.7
Duzib147G1557 Durio zibethinus HOM05D003474 ORTHO05D003971 7.7e-27 124.8 190 40.0
Cpa.g.sc213.15 Carica papaya HOM05D003474 ORTHO05D003971 2.2e-26 123.2 205 39.5
TAR625G1533 Trochodendron aralioides HOM05D003474 ORTHO05D003971 5.0e-26 122.1 212 39.6
Ca_16531_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 6.5e-26 121.7 205 39.5
Lj6g0005521 Lotus japonicus HOM05D003474 ORTHO05D003971 8.5e-26 121.3 202 37.1
EL10Ac6g15097 Beta vulgaris HOM05D003474 ORTHO05D003971 1.1e-25 120.9 189 38.1
Atru.chr4.72 Acer truncatum HOM05D003474 ORTHO05D003971 1.9e-25 120.2 239 35.6
Atru.chr4.73 Acer truncatum HOM05D003474 ORTHO05D003971 1.9e-25 120.2 239 35.6
Lalb_Chr23g0277351 Lupinus albus HOM05D003474 ORTHO05D003971 2.5e-25 119.8 214 39.3
Ca_16533_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 4.2e-25 119.0 205 38.5
Lj6g0019645 Lotus japonicus HOM05D003474 ORTHO05D003971 7.2e-25 118.2 202 36.1
Aqoxy6G00810 Aquilegia oxysepala HOM05D003474 ORTHO05D003971 1.2e-24 117.5 211 39.3
Lj6g0012852 Lotus japonicus HOM05D003474 ORTHO05D003971 1.2e-24 117.5 203 36.5
MBI02_g08731_MAGBIO Magnolia biondii HOM05D003474 ORTHO05D003971 2.7e-24 116.3 205 39.5
VMungo1383G0909 Vigna mungo HOM05D003474 ORTHO05D003971 2.7e-24 116.3 210 38.6
Ah.02g122460 Amaranthus hybridus HOM05D003474 ORTHO05D003971 8.0e-24 114.8 154 42.9
Ca_16530_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 8.0e-24 114.8 205 38.5
Ca_16532_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 1.4e-23 114.0 205 38.0
TPR.G17848 Trifolium pratense HOM05D003474 ORTHO05D003971 1.4e-23 114.0 206 35.4
Eucgr.I00429 Eucalyptus grandis HOM05D003474 ORTHO05D003971 2.3e-23 113.2 219 37.0
Eucgr.I00430 Eucalyptus grandis HOM05D003474 ORTHO05D003971 2.3e-23 113.2 219 37.0
Sed0016843 Sechium edule HOM05D003474 ORTHO05D003971 2.3e-23 113.2 211 37.9
Haze_24940 Corylus avellana HOM05D003474 ORTHO05D003971 4.0e-23 112.5 129 46.5
Psat5g089920 Pisum sativum HOM05D003474 ORTHO05D003971 5.2e-23 112.1 206 36.4
Dinv13182 Davidia involucrata HOM05D003474 ORTHO05D003971 8.8e-23 111.3 163 38.7
Lsat_1_v5_gn_5_43140 Lactuca sativa HOM05D003474 ORTHO05D003971 8.8e-23 111.3 202 34.2
Lsat_1_v5_gn_5_43240 Lactuca sativa HOM05D003474 ORTHO05D003971 8.8e-23 111.3 202 34.2
Nitab4.5_0000104g0120 Nicotiana tabacum HOM05D003474 ORTHO05D003971 8.8e-23 111.3 183 36.6
TPR.G17834 Trifolium pratense HOM05D003474 ORTHO05D003971 8.8e-23 111.3 207 36.7
PSO781G0183 Papaver somniferum HOM05D003474 ORTHO05D003971 1.2e-22 110.9 210 35.7
Aqoxy6G00809 Aquilegia oxysepala HOM05D003474 ORTHO05D003971 1.5e-22 110.5 176 38.1
Medtr3g087275 Medicago truncatula HOM05D003474 ORTHO05D003971 1.5e-22 110.5 207 35.3
Nitab4.5_0000104g0070 Nicotiana tabacum HOM05D003474 ORTHO05D003971 1.5e-22 110.5 189 37.0
Nitab4.5_0016805g0010 Nicotiana tabacum HOM05D003474 ORTHO05D003971 1.5e-22 110.5 183 37.7
CsaV3_6G045460 Cucumis sativus L. HOM05D003474 ORTHO05D003971 2.0e-22 110.2 211 36.0
ClCG01G018800 Citrullus lanatus HOM05D003474 ORTHO05D003971 2.6e-22 109.8 211 35.1
SalBow3G2422 Salvia bowleyana HOM05D003474 ORTHO05D003971 2.6e-22 109.8 201 36.3
BcaB08g37131 Brassica carinata HOM05D003474 ORTHO05D003971 3.4e-22 109.4 210 37.1
PSO781G0184 Papaver somniferum HOM05D003474 ORTHO05D003971 3.4e-22 109.4 209 34.4
ECA246G4897 Erigeron canadensis HOM05D003474 ORTHO05D003971 4.4e-22 109.0 171 36.3
Lalb_Chr08g0231081 Lupinus albus HOM05D003474 ORTHO05D003971 4.4e-22 109.0 204 38.7
Lsat_1_v5_gn_5_43320 Lactuca sativa HOM05D003474 ORTHO05D003971 5.7e-22 108.6 202 33.2
SalBow5G3228 Salvia bowleyana HOM05D003474 ORTHO05D003971 5.7e-22 108.6 201 36.8
TPR.G17847 Trifolium pratense HOM05D003474 ORTHO05D003971 5.7e-22 108.6 207 35.3
QL06p049605 Quercus lobata HOM05D003474 ORTHO05D003971 7.5e-22 108.2 109 54.1
TPR.G17845 Trifolium pratense HOM05D003474 ORTHO05D003971 7.5e-22 108.2 206 34.5
Lsat_1_v5_gn_5_43280 Lactuca sativa HOM05D003474 ORTHO05D003971 1.7e-21 107.1 202 34.7
PSO541G6092 Papaver somniferum HOM05D003474 ORTHO05D003971 1.7e-21 107.1 209 34.0
PSO781G0304 Papaver somniferum HOM05D003474 ORTHO05D003971 1.7e-21 107.1 208 35.1
PGR004G1795 Punica granatum HOM05D003474 ORTHO05D003971 1.7e-21 107.1 210 31.9
Lalb_Chr08g0231071 Lupinus albus HOM05D003474 ORTHO05D003971 2.2e-21 106.7 214 33.2
Sc16g0005640 Simmondsia chinensis HOM05D003474 ORTHO05D003971 2.2e-21 106.7 210 40.5
BcaC04g19322 Brassica carinata HOM05D003474 ORTHO05D003971 2.8e-21 106.3 211 35.5
C09p67210 Brassica napus HOM05D003474 ORTHO05D003971 2.8e-21 106.3 211 35.5
CARHR293740 Cardamine hirsuta HOM05D003474 ORTHO05D003971 3.7e-21 105.9 209 34.9
Sp2g28110 Schrenkiella parvula HOM05D003474 ORTHO05D003971 4.8e-21 105.5 207 35.7
AL8G42540 Arabidopsis lyrata HOM05D003474 ORTHO05D003971 6.3e-21 105.1 203 35.5
A10p27350 Brassica napus HOM05D003474 ORTHO05D003971 6.3e-21 105.1 211 36.0
SalBow5G4466 Salvia bowleyana HOM05D003474 ORTHO05D003971 6.3e-21 105.1 199 37.2
Sopen03g021520 Solanum pennellii HOM05D003474 ORTHO05D003971 6.3e-21 105.1 205 37.6
PGSC0003DMG400021798 Solanum tuberosum HOM05D003474 ORTHO05D003971 6.3e-21 105.1 206 38.3
Solyc03g078620.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 8.3e-21 104.8 206 38.3
Lsat_1_v5_gn_5_43380 Lactuca sativa HOM05D003474 ORTHO05D003971 1.1e-20 104.4 202 34.7
SalBow5G0419 Salvia bowleyana HOM05D003474 ORTHO05D003971 1.1e-20 104.4 199 37.2
Psat5g089720 Pisum sativum HOM05D003474 ORTHO05D003971 1.4e-20 104.0 207 36.2
Thhalv10014734m.g Eutrema salsugineum HOM05D003474 ORTHO05D003971 1.8e-20 103.6 191 37.2
Medtr3g087278 Medicago truncatula HOM05D003474 ORTHO05D003971 1.8e-20 103.6 207 36.7
Medtr3g087325 Medicago truncatula HOM05D003474 ORTHO05D003971 1.8e-20 103.6 207 33.8
BraA06t26118Z Brassica rapa HOM05D003474 ORTHO05D003971 2.4e-20 103.2 205 35.6
Medtr3g087280 Medicago truncatula HOM05D003474 ORTHO05D003971 3.1e-20 102.8 207 34.3
PSO781G0331 Papaver somniferum HOM05D003474 ORTHO05D003971 3.1e-20 102.8 209 34.4
Glyma.18G017500 Glycine max HOM05D003474 ORTHO05D003971 4.1e-20 102.4 206 35.9
Psat5g089840 Pisum sativum HOM05D003474 ORTHO05D003971 4.1e-20 102.4 207 36.7
Psat5g089880 Pisum sativum HOM05D003474 ORTHO05D003971 4.1e-20 102.4 209 36.8
THA.LOC104804926 Tarenaya hassleriana HOM05D003474 ORTHO05D003971 4.1e-20 102.4 189 36.5
Migut.L00118 Erythranthe guttata HOM05D003474 ORTHO05D003971 5.4e-20 102.1 176 34.1
AT5G65030 Arabidopsis thaliana HOM05D003474 ORTHO05D003971 7.0e-20 101.7 203 34.5
ClCG01G018790 Citrullus lanatus HOM05D003474 ORTHO05D003971 7.0e-20 101.7 201 36.8
Thhalv10005637m.g Eutrema salsugineum HOM05D003474 ORTHO05D003971 9.1e-20 101.3 203 35.5
Medtr3g087330 Medicago truncatula HOM05D003474 ORTHO05D003971 9.1e-20 101.3 207 36.2
AL6G20700 Arabidopsis lyrata HOM05D003474 ORTHO05D003971 1.2e-19 100.9 191 36.6
BolC9t59492H Brassica oleracea HOM05D003474 ORTHO05D003971 1.2e-19 100.9 211 34.6
Psat5g089800 Pisum sativum HOM05D003474 ORTHO05D003971 1.2e-19 100.9 211 34.1
BraA10t44786Z Brassica rapa HOM05D003474 ORTHO05D003971 1.6e-19 100.5 211 34.6
Lsat_1_v5_gn_5_43760 Lactuca sativa HOM05D003474 ORTHO05D003971 3.5e-19 99.4 213 34.7
TPR.G17829 Trifolium pratense HOM05D003474 ORTHO05D003971 3.5e-19 99.4 206 34.0
Sp6g33190 Schrenkiella parvula HOM05D003474 ORTHO05D003971 5.9e-19 98.6 215 36.3
BcaC01g02734 Brassica carinata HOM05D003474 ORTHO05D003971 7.7e-19 98.2 205 32.7
C03p61160 Brassica napus HOM05D003474 ORTHO05D003971 7.7e-19 98.2 205 32.7
BolC3t18376H Brassica oleracea HOM05D003474 ORTHO05D003971 7.7e-19 98.2 205 32.7
DCAR_003502 Daucus carota HOM05D003474 ORTHO05D003971 7.7e-19 98.2 205 33.2
BcaB02g09856 Brassica carinata HOM05D003474 ORTHO05D003971 1.3e-18 97.4 205 34.1
A06p31850 Brassica napus HOM05D003474 ORTHO05D003971 1.7e-18 97.1 174 34.5
Carub.0008s2587 Capsella rubella HOM05D003474 ORTHO05D003971 1.7e-18 97.1 205 33.2
CARHR203080 Cardamine hirsuta HOM05D003474 ORTHO05D003971 1.7e-18 97.1 215 34.0
Medtr3g087270 Medicago truncatula HOM05D003474 ORTHO05D003971 1.7e-18 97.1 207 34.8
Sabra05G0062700 Salix brachista HOM05D003474 ORTHO05D003971 2.9e-18 96.3 174 38.5
Carub.0006s0867 Capsella rubella HOM05D003474 ORTHO05D003971 6.5e-18 95.1 184 35.3
Glyma.11G239900 Glycine max HOM05D003474 ORTHO05D003971 1.1e-17 94.4 209 34.9
AT5G10210 Arabidopsis thaliana HOM05D003474 ORTHO05D003971 3.2e-17 92.8 191 35.6
SEGI_20067 Sequoiadendron giganteum HOM05D003474 ORTHO05D003971 1.2e-16 90.9 139 34.5
Rhsim08G0010000 Rhododendron simsii HOM05D003474 ORTHO05D003971 2.1e-16 90.1 188 35.6
TPR.G17835 Trifolium pratense HOM05D003474 ORTHO05D003971 3.6e-16 89.4 207 34.8
Migut.H02362 Erythranthe guttata HOM05D003474 ORTHO05D003971 1.0e-15 87.8 223 29.1
Phvul.001G251900 Phaseolus vulgaris HOM05D003474 ORTHO05D003971 1.0e-15 87.8 167 35.3
DCAR_003501 Daucus carota HOM05D003474 ORTHO05D003971 2.3e-15 86.7 182 31.9
Sabra07G0076400 Salix brachista HOM05D003474 ORTHO05D003971 6.8e-15 85.1 182 33.0
SEGI_16345 Sequoiadendron giganteum HOM05D000003 ORTHO05D000004 6.8e-15 85.1 154 33.8
SalBow5G1505 Salvia bowleyana HOM05D003474 ORTHO05D003971 1.2e-14 84.3 114 39.5
SEGI_10997 Sequoiadendron giganteum HOM05D002590 ORTHO05D002763 1.2e-14 84.3 147 35.4
SEGI_25558 Sequoiadendron giganteum HOM05D002590 ORTHO05D002763 1.2e-14 84.3 147 35.4
Actinidia28867 Actinidia chinensis HOM05D003474 ORTHO05D003971 3.4e-14 82.8 185 36.2
SalBow5G5729 Salvia bowleyana HOM05D003474 ORTHO05D003971 6.3e-13 78.6 167 32.9
PGSC0003DMG400001890 Solanum tuberosum HOM05D003474 ORTHO05D003971 1.1e-12 77.8 133 37.6
Solyc04g055140.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 1.4e-12 77.4 134 37.3
Peaxi162Scf00212g00105 Petunia axillaris HOM05D003474 ORTHO05D003971 2.7e-11 73.2 130 40.8
Sopen04g025010 Solanum pennellii HOM05D003474 ORTHO05D003971 3.5e-11 72.8 133 35.3
Solyc04g055150.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 1.7e-10 70.5 134 34.3
Medtr3g087300 Medicago truncatula HOM05D003474 ORTHO05D003971 2.3e-10 70.1 195 29.7
BcaB08g37129 Brassica carinata HOM05D003474 ORTHO05D003971 2.9e-10 69.7 104 40.4
Nitab4.5_0006517g0020 Nicotiana tabacum HOM05D003474 ORTHO05D003971 2.9e-10 69.7 132 34.1
Peaxi162Scf00212g00111 Petunia axillaris HOM05D003474 ORTHO05D003971 2.9e-10 69.7 88 40.9
TPR.G17838 Trifolium pratense HOM05D003474 ORTHO05D003971 8.6e-10 68.2 201 28.9
SalBow5G3492 Salvia bowleyana HOM05D003474 ORTHO05D003971 1.5e-09 67.4 147 37.4
AagrBONN_evm.TU.Sc2ySwM_117.3623 Anthoceros agrestis HOM05D002590 ORTHO05D002763 4.3e-09 65.9 147 31.3
BcaC04g19323 Brassica carinata HOM05D003474 ORTHO05D003971 2.8e-08 63.2 96 38.5
Sopen04g025000 Solanum pennellii HOM05D003474 ORTHO05D003971 8.0e-08 61.6 134 33.6
Os04g0455700 Oryza sativa ssp. japonica HOM05D032805 ORTHO05D037220 2.0e-06 57.0 170 27.6
Solyc04g055130.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 2.0e-06 57.0 134 31.3
Zm00001eb081100 Zea mays HOM05D032805 ORTHO05D037220 2.0e-06 57.0 145 26.9
MELO3C007759.2 Cucumis melo HOM05D003474 ORTHO05D003971 5.7e-06 55.5 142 33.1


User provided reference genes

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