Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G1400 Cannabis sativa HOM05D005612 ORTHO05D007014 5.0e-221 770.8 382 100.0
Ciclev10010228m.g Citrus clementina HOM05D005612 ORTHO05D007014 1.4e-167 593.2 381 76.9
RcHm_v2.0_Chr3g0497141 Rosa chinensis HOM05D005612 ORTHO05D007014 1.7e-165 586.3 387 75.5
Atru.chr2.2479 Acer truncatum HOM05D005612 ORTHO05D007014 3.9e-165 585.1 390 75.1
GSVIVG01027677001 Vitis vinifera HOM05D005612 ORTHO05D007014 1.5e-164 583.2 390 75.1
QL08p052678 Quercus lobata HOM05D005612 ORTHO05D007014 2.8e-163 578.9 391 74.4
CSS0047351 Camellia sinensis var. sinensis HOM05D005612 ORTHO05D007014 3.6e-163 578.6 390 72.8
vmacro13411 Vaccinium macrocarpon HOM05D005612 ORTHO05D007014 3.6e-163 578.6 389 72.5
FAN28G0581 Fragaria x ananassa HOM05D005612 ORTHO05D007014 1.4e-162 576.6 387 73.1
Prupe.6G155400 Prunus persica HOM05D005612 ORTHO05D007014 1.8e-162 576.2 391 73.7
TAR375G1134 Trochodendron aralioides HOM05D005612 ORTHO05D007014 3.1e-162 575.5 391 73.1
FAN28G2973 Fragaria x ananassa HOM05D005612 ORTHO05D007014 6.9e-162 574.3 387 73.1
Potri.014G068500 Populus trichocarpa HOM05D005612 ORTHO05D007014 6.9e-162 574.3 380 76.1
FvH4_1g28100 Fragaria vesca HOM05D005612 ORTHO05D007014 5.8e-161 571.2 387 72.6
Nn4g26368 Nelumbo nucifera HOM05D005612 ORTHO05D007014 7.6e-161 570.9 391 72.6
FAN23G2738 Fragaria x ananassa HOM05D005612 ORTHO05D007014 1.3e-160 570.1 387 72.6
Hma1.2p1_2025F.1_g311480 Hydrangea macrophylla HOM05D005612 ORTHO05D007014 2.2e-160 569.3 389 72.0
FAN26G0204 Fragaria x ananassa HOM05D005612 ORTHO05D007014 1.9e-159 566.2 409 69.2
Dinv43696 Davidia involucrata HOM05D005612 ORTHO05D007014 1.6e-158 563.1 389 72.2
Aqoxy3G02061 Aquilegia oxysepala HOM05D005612 ORTHO05D007014 3.5e-158 562.0 391 71.1
Duzib138G1608 Durio zibethinus HOM05D005612 ORTHO05D007014 7.8e-158 560.8 407 69.5
Aqoxy1G04104 Aquilegia oxysepala HOM05D005612 ORTHO05D007014 1.0e-157 560.5 391 70.6
Hma1.2p1_0511F.1_g169190 Hydrangea macrophylla HOM05D005612 ORTHO05D007014 1.3e-157 560.1 389 71.2
Actinidia12252 Actinidia chinensis HOM05D005612 ORTHO05D007014 1.9e-156 556.2 387 71.6
Thecc.01G378200 Theobroma cacao HOM05D005612 ORTHO05D007014 1.6e-155 553.1 408 69.9
PSO339G2081 Papaver somniferum HOM05D005612 ORTHO05D007014 2.4e-154 549.3 384 71.6
Eucgr.E01443 Eucalyptus grandis HOM05D005612 ORTHO05D007014 9.0e-154 547.4 389 71.5
Gorai.004G162600 Gossypium raimondii HOM05D005612 ORTHO05D007014 1.2e-153 547.0 408 67.6
CiPaw.01G263000 Carya illinoinensis HOM05D005612 ORTHO05D007014 3.4e-153 545.4 388 72.2
PSO384G4101 Papaver somniferum HOM05D005612 ORTHO05D007014 3.4e-153 545.4 382 71.2
Gohir.A08G135500 Gossypium hirsutum HOM05D005612 ORTHO05D007014 4.5e-153 545.0 408 67.4
Cpa.g.sc18.108 Carica papaya HOM05D005612 ORTHO05D007014 5.8e-153 544.7 386 71.5
Manes.01G266600 Manihot esculenta HOM05D005612 ORTHO05D007014 7.6e-153 544.3 390 70.5
COL.COLO4_12531 Corchorus olitorius HOM05D005612 ORTHO05D007014 1.7e-152 543.1 374 73.0
MSTRG.17178 Avicennia marina HOM05D005612 ORTHO05D007014 1.1e-151 540.4 382 70.2
TWI14G1300 Tripterygium wilfordii HOM05D005612 ORTHO05D007014 1.9e-151 539.7 390 68.5
Lj3g0004128 Lotus japonicus HOM05D005612 ORTHO05D007014 2.4e-151 539.3 387 70.5
DCAR_008555 Daucus carota HOM05D005612 ORTHO05D007014 4.2e-151 538.5 391 69.6
MD00G1094900 Malus domestica HOM05D005612 ORTHO05D007014 7.1e-151 537.7 396 69.2
AUR62000130 Chenopodium quinoa HOM05D005612 ORTHO05D007014 9.3e-151 537.3 398 69.8
Manes.05G046700 Manihot esculenta HOM05D005612 ORTHO05D007014 2.7e-150 535.8 391 71.6
Lalb_Chr03g0039601 Lupinus albus HOM05D005612 ORTHO05D007014 1.0e-149 533.9 388 69.3
Migut.B01623 Erythranthe guttata HOM05D005612 ORTHO05D007014 3.0e-149 532.3 382 69.1
Cc02_g24020 Coffea canephora HOM05D005612 ORTHO05D007014 6.7e-149 531.2 390 67.7
Sed0014004 Sechium edule HOM05D005612 ORTHO05D007014 6.7e-149 531.2 390 68.7
EL10Ac4g10240 Beta vulgaris HOM05D005612 ORTHO05D007014 8.7e-149 530.8 389 69.4
Haze_16797 Corylus avellana HOM05D005612 ORTHO05D007014 8.7e-149 530.8 360 73.9
PGR042G0232 Punica granatum HOM05D005612 ORTHO05D007014 1.5e-148 530.0 378 70.1
Glyma.12G134000 Glycine max HOM05D005612 ORTHO05D007014 2.5e-148 529.3 387 69.8
Psat0s2995g0040 Pisum sativum HOM05D005612 ORTHO05D007014 2.5e-148 529.3 385 69.1
Cfa015219 Carpinus fangiana HOM05D005612 ORTHO05D007014 7.4e-148 527.7 363 73.0
ClCG05G002330 Citrullus lanatus HOM05D005612 ORTHO05D007014 9.6e-148 527.3 398 67.6
TPR.G17234 Trifolium pratense HOM05D005612 ORTHO05D007014 2.1e-147 526.2 385 68.3
THA.LOC104827614 Tarenaya hassleriana HOM05D005612 ORTHO05D007014 3.7e-147 525.4 389 67.4
CsaV3_3G009760 Cucumis sativus L. HOM05D005612 ORTHO05D007014 1.4e-146 523.5 382 67.8
Glyma.06G270700 Glycine max HOM05D005612 ORTHO05D007014 2.4e-146 522.7 389 69.2
Phvul.011G138100 Phaseolus vulgaris HOM05D005612 ORTHO05D007014 2.4e-146 522.7 386 68.9
Gohir.D08G156300 Gossypium hirsutum HOM05D005612 ORTHO05D007014 3.1e-146 522.3 393 67.7
Lalb_Chr01g0021461 Lupinus albus HOM05D005612 ORTHO05D007014 3.1e-146 522.3 387 68.7
arahy.Tifrunner.gnm1.ann1.39QM8U Arachis hypogaea HOM05D005612 ORTHO05D007014 9.0e-146 520.8 387 68.5
Carub.0004s2795 Capsella rubella HOM05D005612 ORTHO05D007014 5.8e-145 518.1 387 66.4
arahy.Tifrunner.gnm1.ann1.Q1YE57 Arachis hypogaea HOM05D005612 ORTHO05D007014 1.0e-144 517.3 382 69.1
Sabra14G0048200 Salix brachista HOM05D005612 ORTHO05D007014 1.0e-144 517.3 371 72.2
Hund07502 Selenicereus undatus HOM05D005612 ORTHO05D007014 2.2e-144 516.2 414 64.5
ECA236G2759 Erigeron canadensis HOM05D005612 ORTHO05D007014 3.8e-144 515.4 389 66.6
Medtr4g053430 Medicago truncatula HOM05D005612 ORTHO05D007014 1.6e-142 510.0 343 74.9
vmacro21020 Vaccinium macrocarpon HOM05D005612 ORTHO05D007014 2.7e-142 509.2 388 66.8
AL4G44420 Arabidopsis lyrata HOM05D005612 ORTHO05D007014 3.5e-142 508.8 389 65.6
Thhalv10001485m.g Eutrema salsugineum HOM05D005612 ORTHO05D007014 3.5e-142 508.8 388 66.2
Solyc08g006610.3 Solanum lycopersicum HOM05D005612 ORTHO05D007014 1.5e-140 503.4 389 65.3
AT2G45320 Arabidopsis thaliana HOM05D005612 ORTHO05D007014 4.3e-140 501.9 388 66.0
BcaB01g03271 Brassica carinata HOM05D005612 ORTHO05D007014 4.3e-140 501.9 389 65.3
Sp4g27340 Schrenkiella parvula HOM05D005612 ORTHO05D007014 4.3e-140 501.9 388 65.7
Peaxi162Scf00045g01936 Petunia axillaris HOM05D005612 ORTHO05D007014 7.4e-140 501.1 387 66.9
A03p25180 Brassica napus HOM05D005612 ORTHO05D007014 9.6e-140 500.7 391 66.2
Nitab4.5_0000264g0010 Nicotiana tabacum HOM05D005612 ORTHO05D007014 9.6e-140 500.7 390 65.6
Lsat_1_v5_gn_7_9741 Lactuca sativa HOM05D005612 ORTHO05D007014 2.1e-139 499.6 373 67.6
Sopen08g002560 Solanum pennellii HOM05D005612 ORTHO05D007014 1.1e-138 497.3 389 65.0
BcaC01g05140 Brassica carinata HOM05D005612 ORTHO05D007014 1.4e-138 496.9 388 66.0
BolC3t15349H Brassica oleracea HOM05D005612 ORTHO05D007014 1.4e-138 496.9 388 66.0
Oeu055499.1 Olea europaea HOM05D005612 ORTHO05D007014 1.8e-138 496.5 373 67.6
BraA03t11718Z Brassica rapa HOM05D005612 ORTHO05D007014 2.4e-138 496.1 391 65.2
SalBow5G3218 Salvia bowleyana HOM05D005612 ORTHO05D007014 2.4e-138 496.1 362 68.0
C03p30020 Brassica napus HOM05D005612 ORTHO05D007014 3.1e-138 495.7 390 64.9
CAN.G530.1 Capsicum annuum HOM05D005612 ORTHO05D007014 3.4e-137 492.3 388 65.2
HanXRQChr04g0122751 Helianthus annuus HOM05D005612 ORTHO05D007014 7.6e-137 491.1 388 66.5
Lsat_1_v5_gn_8_86120 Lactuca sativa HOM05D005612 ORTHO05D007014 7.1e-135 484.6 364 67.3
Ca_19396_v3 Cicer arietinum L. HOM05D005612 ORTHO05D007014 1.9e-132 476.5 346 69.4
unitig_749.g14376 Utricularia gibba HOM05D005612 ORTHO05D007014 1.9e-132 476.5 382 63.9
Ah.04g161950 Amaranthus hybridus HOM05D004275 ORTHO05D005720 2.4e-130 469.5 414 60.9
Lj7C530T5 Lonicera japonica HOM05D005612 ORTHO05D007014 6.9e-130 468.0 423 59.1
Sc16g0011470 Simmondsia chinensis HOM05D005612 ORTHO05D007014 1.4e-125 453.8 349 67.0
Nitab4.5_0005450g0010 Nicotiana tabacum HOM05D005612 ORTHO05D007014 4.2e-119 432.2 325 67.1
Zm00001eb195050 Zea mays HOM05D005612 ORTHO05D007014 4.4e-116 422.2 375 58.9
MELO3C006197.2 Cucumis melo HOM05D005612 ORTHO05D007014 4.8e-115 418.7 328 64.3
AUR62019310 Chenopodium quinoa HOM05D005612 ORTHO05D007014 2.4e-114 416.4 264 76.1
PGSC0003DMG400026305 Solanum tuberosum HOM05D005612 ORTHO05D007014 2.0e-113 413.3 321 65.4
CDE07G1659 Ceratophyllum demersum HOM05D005612 ORTHO05D007014 1.0e-112 411.0 342 59.4
VMungo1127G0102 Vigna mungo HOM05D005612 ORTHO05D007014 3.2e-111 406.0 252 78.2
ATR1100G025 Amborella trichopoda HOM05D005612 ORTHO05D007014 2.9e-104 382.9 316 59.2
unitig_76.g29085 Utricularia gibba HOM05D005612 ORTHO05D007014 2.2e-96 356.7 377 52.0
MBI14_g08144_MAGBIO Magnolia biondii HOM05D005612 ORTHO05D007014 1.2e-94 350.9 265 66.0
CiPaw.09G176500 Carya illinoinensis HOM05D005612 ORTHO05D007014 2.4e-90 336.7 323 57.3
ATR0686G054 Amborella trichopoda HOM05D005612 ORTHO05D007014 1.0e-88 331.3 262 61.1
CARHR140520 Cardamine hirsuta HOM05D005612 ORTHO05D007014 8.9e-85 318.2 202 73.8
Aa31LG1G26830 Aethionema arabicum HOM05D005612 ORTHO05D007014 2.9e-83 313.2 194 73.7
Duzib138G0844 Durio zibethinus HOM05D005612 ORTHO05D007014 2.5e-79 300.1 162 87.0
SGA_v2.0_scaffold153G37000 Striga asiatica HOM05D005612 ORTHO05D007014 7.5e-76 288.5 223 66.8
SMO119G0175 Selaginella moellendorffii HOM05D005612 ORTHO05D007014 4.1e-74 282.7 270 50.7
Dinv32369 Davidia involucrata HOM05D005612 ORTHO05D007014 3.2e-66 256.5 193 68.9
Zm00001eb249030 Zea mays HOM05D005612 ORTHO05D007014 1.3e-64 251.1 219 58.4
Zm00001eb012290 Zea mays HOM05D005612 ORTHO05D007014 2.3e-64 250.4 188 63.8
FAN19G0199 Fragaria x ananassa HOM05D005612 ORTHO05D007014 1.2e-60 238.0 131 82.4
AagrBONN_evm.TU.Sc2ySwM_117.669 Anthoceros agrestis HOM05D005612 ORTHO05D007014 5.1e-56 222.6 217 51.2
Pp3c17_6010 Physcomitrium patens HOM05D005612 ORTHO05D007014 2.4e-53 213.8 357 36.7
CARHR140530 Cardamine hirsuta HOM05D005612 ORTHO05D007014 5.4e-50 202.6 182 59.9
MSTRG.28297 Avicennia marina HOM05D005612 ORTHO05D007014 2.1e-49 200.7 114 81.6
Medtr8g102045 Medicago truncatula HOM05D005612 ORTHO05D007014 1.5e-44 184.5 127 73.2
Zm00001eb385140 Zea mays HOM05D005612 ORTHO05D007014 1.7e-40 171.0 133 60.9
Zm00001eb084960 Zea mays HOM05D005612 ORTHO05D007014 8.7e-40 168.7 133 60.9
Medtr8g102040 Medicago truncatula HOM05D005612 ORTHO05D007014 7.4e-39 165.6 131 61.1
Gohir.A08G135200 Gossypium hirsutum HOM05D005612 ORTHO05D007014 4.9e-35 152.9 168 53.6
Oeu011925.1 Olea europaea HOM05D005612 ORTHO05D007014 4.9e-35 152.9 200 42.5
Rhsim01G0149000 Rhododendron simsii HOM05D005612 ORTHO05D007014 9.3e-34 148.7 243 37.9
SEGI_33395 Sequoiadendron giganteum HOM05D005612 ORTHO05D007014 1.5e-31 141.4 182 46.7
Zm00001eb270960 Zea mays HOM05D005612 ORTHO05D002685 1.1e-29 135.2 84 76.2
Gohir.A08G135550 Gossypium hirsutum HOM05D005612 ORTHO05D007014 5.8e-28 129.4 145 54.5
Glyma.20G076400 Glycine max HOM05D005612 ORTHO05D007014 3.5e-25 120.2 74 71.6
TAR626G0370 Trochodendron aralioides HOM05D005612 ORTHO05D007014 3.9e-24 116.7 63 82.5
Zm00001eb321930 Zea mays HOM05D005612 ORTHO05D007014 4.3e-23 113.2 109 52.3
Haze_18350 Corylus avellana HOM05D005612 ORTHO05D007014 9.6e-23 112.1 72 73.6
MBI14_g08143_MAGBIO Magnolia biondii HOM05D005612 ORTHO05D007014 1.8e-21 107.8 113 55.8
Os06g0571300 Oryza sativa ssp. japonica HOM05D005612 ORTHO05D007014 6.1e-17 92.8 90 61.1
MD15G1255900 Malus domestica HOM05D001392 ORTHO05D036605 2.6e-12 77.4 46 80.4
Medtr8g102042 Medicago truncatula HOM05D005612 ORTHO05D007014 1.9e-10 71.2 56 66.1
Dinv39084 Davidia involucrata HOM05D005612 ORTHO05D007014 4.2e-10 70.1 105 37.1
Lalb_Chr08g0243441 Lupinus albus HOM05D005612 ORTHO05D007014 4.2e-10 70.1 46 71.7


User provided reference genes

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