Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G1386 Cannabis sativa HOM05D005436 ORTHO05D006215 1.6e-181 639.4 355 100.0
Manes.13G025400 Manihot esculenta HOM05D005436 ORTHO05D006215 4.7e-96 355.5 352 62.8
Cfa009203 Carpinus fangiana HOM05D005436 ORTHO05D006215 7.9e-96 354.8 352 63.1
MELO3C010688.2 Cucumis melo HOM05D005436 ORTHO05D006215 1.0e-95 354.4 336 56.8
QL03p058434 Quercus lobata HOM05D005436 ORTHO05D006215 2.6e-94 349.7 353 63.7
CiPaw.05G183100 Carya illinoinensis HOM05D005436 ORTHO05D006215 1.3e-93 347.4 353 64.3
Glyma.02G038300 Glycine max HOM05D005436 ORTHO05D006215 1.7e-93 347.1 352 62.5
Gorai.009G335800 Gossypium raimondii HOM05D005436 ORTHO05D006215 2.8e-93 346.3 352 63.6
Thecc.02G258400 Theobroma cacao HOM05D005436 ORTHO05D006215 3.7e-93 345.9 352 62.8
COL.COLO4_24251 Corchorus olitorius HOM05D005436 ORTHO05D006215 4.8e-93 345.5 353 62.6
Ciclev10032010m.g Citrus clementina HOM05D005436 ORTHO05D006215 8.2e-93 344.7 352 63.4
TAR629G0589 Trochodendron aralioides HOM05D005436 ORTHO05D006215 2.4e-92 343.2 355 61.7
Atru.chr11.2113 Acer truncatum HOM05D005436 ORTHO05D006215 5.3e-92 342.0 352 62.5
Atru.chr11.2128 Acer truncatum HOM05D005436 ORTHO05D006215 5.3e-92 342.0 352 62.5
Gohir.A05G312700 Gossypium hirsutum HOM05D005436 ORTHO05D006215 7.0e-92 341.7 352 62.5
Duzib251G0682 Durio zibethinus HOM05D005436 ORTHO05D006215 4.5e-91 339.0 354 61.0
Potri.010G045300 Populus trichocarpa HOM05D005436 ORTHO05D006215 4.5e-91 339.0 352 62.2
TAR629G3419 Trochodendron aralioides HOM05D005436 ORTHO05D006215 4.5e-91 339.0 355 61.1
Lj3A1057T77 Lonicera japonica HOM05D005436 ORTHO05D006215 1.5e-89 334.0 352 61.4
CSS0002796 Camellia sinensis var. sinensis HOM05D005436 ORTHO05D006215 2.5e-89 333.2 355 61.4
HanXRQChr08g0208111 Helianthus annuus HOM05D005436 ORTHO05D006215 1.6e-88 330.5 355 61.1
Sabra10G0023000 Salix brachista HOM05D005436 ORTHO05D006215 2.1e-88 330.1 352 61.1
THA.LOC104822162 Tarenaya hassleriana HOM05D005436 ORTHO05D006215 1.0e-87 327.8 352 61.9
Lsat_1_v5_gn_8_150780 Lactuca sativa HOM05D005436 ORTHO05D006215 6.7e-87 325.1 355 59.7
CsaV3_2G024910 Cucumis sativus L. HOM05D005436 ORTHO05D006215 5.7e-86 322.0 316 64.6
Nitab4.5_0004301g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 5.7e-86 322.0 353 59.5
PGR119G1276 Punica granatum HOM05D005436 ORTHO05D006215 9.7e-86 321.2 357 60.8
VMungo1215G1754 Vigna mungo HOM05D005436 ORTHO05D006215 3.7e-85 319.3 352 58.0
MSTRG.7922 Avicennia marina HOM05D005436 ORTHO05D006215 4.8e-85 318.9 355 58.0
Carub.0002s1732 Capsella rubella HOM05D005436 ORTHO05D006215 4.8e-85 318.9 352 59.4
Sopen05g008220 Solanum pennellii HOM05D005436 ORTHO05D006215 4.8e-85 318.9 355 58.9
AUR62005449 Chenopodium quinoa HOM05D005436 ORTHO05D006215 8.2e-85 318.2 352 60.5
Prupe.1G243200 Prunus persica HOM05D005436 ORTHO05D006215 1.4e-84 317.4 355 58.3
PGSC0003DMG400018621 Solanum tuberosum HOM05D005436 ORTHO05D006215 1.4e-84 317.4 355 58.6
Gorai.002G187200 Gossypium raimondii HOM05D005436 ORTHO05D006215 1.8e-84 317.0 352 59.4
Sp5g25750 Schrenkiella parvula HOM05D005436 ORTHO05D006215 1.8e-84 317.0 352 58.2
Glyma.01G026500 Glycine max HOM05D005436 ORTHO05D006215 3.1e-84 316.2 293 64.2
Rhsim12G0040900 Rhododendron simsii HOM05D005436 ORTHO05D006215 5.3e-84 315.5 355 58.0
Gohir.D01G151000 Gossypium hirsutum HOM05D005436 ORTHO05D006215 7.0e-84 315.1 352 59.1
Hund25385 Selenicereus undatus HOM05D005436 ORTHO05D006215 7.0e-84 315.1 355 59.7
ClCG08G017720 Citrullus lanatus HOM05D005436 ORTHO05D006215 9.1e-84 314.7 381 55.9
Actinidia27803 Actinidia chinensis HOM05D005436 ORTHO05D006215 1.2e-83 314.3 349 58.7
AL2G30010 Arabidopsis lyrata HOM05D005436 ORTHO05D006215 1.2e-83 314.3 352 58.0
EL10Ac6g13796 Beta vulgaris HOM05D005436 ORTHO05D006215 1.6e-83 313.9 352 59.4
Oeu001711.1 Olea europaea HOM05D005436 ORTHO05D006215 2.0e-83 313.5 352 58.0
TWI36G0572 Tripterygium wilfordii HOM05D005436 ORTHO05D006215 2.0e-83 313.5 352 58.5
Solyc05g013410.3 Solanum lycopersicum HOM05D005436 ORTHO05D006215 3.5e-83 312.8 355 58.6
Migut.E00197 Erythranthe guttata HOM05D005436 ORTHO05D006215 4.5e-83 312.4 352 56.8
Manes.12G023900 Manihot esculenta HOM05D005436 ORTHO05D006215 5.9e-83 312.0 352 59.7
Ah.03g133110 Amaranthus hybridus HOM05D005436 ORTHO05D006215 7.7e-83 311.6 353 59.5
Sed0020021 Sechium edule HOM05D005436 ORTHO05D006215 1.3e-82 310.8 291 64.6
Gohir.A01G159300 Gossypium hirsutum HOM05D005436 ORTHO05D006215 1.7e-82 310.5 295 66.8
MSTRG.2420 Avicennia marina HOM05D005436 ORTHO05D006215 2.9e-82 309.7 294 65.3
Nitab4.5_0002631g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 2.9e-82 309.7 304 63.2
PSO832G1925 Papaver somniferum HOM05D005436 ORTHO05D006215 3.8e-82 309.3 371 54.7
CARHR063810 Cardamine hirsuta HOM05D005436 ORTHO05D006215 1.1e-81 307.8 352 57.4
Sc14g0008720 Simmondsia chinensis HOM05D005436 ORTHO05D006215 2.5e-81 306.6 352 58.2
Eucgr.H02509 Eucalyptus grandis HOM05D005436 ORTHO05D006215 4.2e-81 305.8 377 55.2
A07p37030 Brassica napus HOM05D005436 ORTHO05D006215 5.5e-81 305.4 353 57.5
BraA07t31265Z Brassica rapa HOM05D005436 ORTHO05D006215 2.1e-80 303.5 353 57.2
Nitab4.5_0000069g0320 Nicotiana tabacum HOM05D005436 ORTHO05D006215 3.6e-80 302.8 279 66.7
Lalb_Chr16g0381971 Lupinus albus HOM05D005436 ORTHO05D006215 6.1e-80 302.0 352 56.5
Aa31LG4G10370 Aethionema arabicum HOM05D005436 ORTHO05D006215 1.0e-79 301.2 353 58.6
MD13G1102600 Malus domestica HOM05D005436 ORTHO05D006215 1.8e-79 300.4 355 55.8
C06p44590 Brassica napus HOM05D005436 ORTHO05D006215 2.3e-79 300.1 353 56.7
Aqoxy5G03784 Aquilegia oxysepala HOM05D005436 ORTHO05D006215 3.0e-79 299.7 292 64.4
Thhalv10018848m.g Eutrema salsugineum HOM05D005436 ORTHO05D006215 8.8e-79 298.1 337 58.8
BolC6t39523H Brassica oleracea HOM05D005436 ORTHO05D006215 1.2e-78 297.7 353 56.4
CDE07G1825 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 1.2e-78 297.7 352 54.8
FAN12G3651 Fragaria x ananassa HOM05D005436 ORTHO05D006215 5.7e-78 295.4 380 43.9
Phvul.002G150600 Phaseolus vulgaris HOM05D005436 ORTHO05D006215 5.7e-78 295.4 353 55.2
Nitab4.5_0000740g0060 Nicotiana tabacum HOM05D005436 ORTHO05D006215 1.3e-77 294.3 355 56.1
SGA_v2.0_scaffold87G27081 Striga asiatica HOM05D005436 ORTHO05D006215 1.3e-77 294.3 351 55.8
ECA233G4095 Erigeron canadensis HOM05D005436 ORTHO05D006215 2.8e-77 293.1 280 65.4
Migut.L01484 Erythranthe guttata HOM05D005436 ORTHO05D006215 2.8e-77 293.1 281 65.5
Sopen01g003470 Solanum pennellii HOM05D005436 ORTHO05D006215 1.1e-76 291.2 283 62.2
Lj2g0004338 Lotus japonicus HOM05D005436 ORTHO05D006215 1.4e-76 290.8 354 54.8
AT1G70590 Arabidopsis thaliana HOM05D005436 ORTHO05D006215 1.8e-76 290.4 355 55.8
Cpa.g.sc33.9 Carica papaya HOM05D005436 ORTHO05D006215 3.1e-76 289.7 349 53.9
unitig_744.g24291 Utricularia gibba HOM05D005436 ORTHO05D006215 3.1e-76 289.7 349 52.1
PGSC0003DMG400016374 Solanum tuberosum HOM05D005436 ORTHO05D006215 9.1e-76 288.1 283 62.2
Solyc01g007930.4 Solanum lycopersicum HOM05D005436 ORTHO05D006215 2.7e-75 286.6 283 61.5
unitig_21.g20870 Utricularia gibba HOM05D005436 ORTHO05D006215 2.2e-74 283.5 317 48.9
SHI17740 Sapria himalayana HOM05D005436 ORTHO05D006215 2.9e-74 283.1 291 62.9
Haze_12240 Corylus avellana HOM05D005436 ORTHO05D006215 2.5e-73 280.0 233 60.1
Dinv15239 Davidia involucrata HOM05D005436 ORTHO05D006215 5.5e-73 278.9 234 60.7
Gohir.D05G314200 Gossypium hirsutum HOM05D005436 ORTHO05D006215 4.7e-72 275.8 233 61.8
arahy.Tifrunner.gnm1.ann1.9TCE4B Arachis hypogaea HOM05D005436 ORTHO05D006215 7.5e-70 268.5 353 53.5
ATR0686G177 Amborella trichopoda HOM05D005436 ORTHO05D006215 1.3e-69 267.7 350 52.6
Lalb_Chr09g0326141 Lupinus albus HOM05D005436 ORTHO05D006215 1.3e-69 267.7 351 51.3
TAR371G0549 Trochodendron aralioides HOM05D005436 ORTHO05D006215 2.2e-69 266.9 248 56.5
Medtr5g033210 Medicago truncatula HOM05D005436 ORTHO05D006215 2.8e-69 266.5 318 55.3
RcHm_v2.0_Chr4g0432791 Rosa chinensis HOM05D005436 ORTHO05D006215 2.8e-69 266.5 356 52.8
Nn4g22635 Nelumbo nucifera HOM05D005436 ORTHO05D006215 8.3e-69 265.0 245 55.1
Actinidia08140 Actinidia chinensis HOM05D005436 ORTHO05D006215 1.4e-68 264.2 304 58.6
FAN17G0814 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.8e-68 263.8 354 51.1
FvH4_4g25470 Fragaria vesca HOM05D005436 ORTHO05D006215 2.4e-68 263.5 354 51.4
CAN.G282.54 Capsicum annuum HOM05D005436 ORTHO05D006215 4.1e-68 262.7 285 58.9
DCAR_024434 Daucus carota HOM05D005436 ORTHO05D006215 7.0e-68 261.9 353 50.1
Ca_04576_v3 Cicer arietinum L. HOM05D005436 ORTHO05D006215 2.3e-66 256.9 351 51.9
SEGI_41390 Sequoiadendron giganteum HOM05D005436 ORTHO05D006215 2.3e-66 256.9 295 56.3
MBI10_g03014_MAGBIO Magnolia biondii HOM05D005436 ORTHO05D006215 1.1e-65 254.6 358 51.7
Potri.008G187200 Populus trichocarpa HOM05D005436 ORTHO05D006215 2.5e-65 253.4 203 63.5
FAN07G0404 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.2e-64 251.1 354 49.7
FAN22G0693 Fragaria x ananassa HOM05D005436 ORTHO05D006215 5.7e-62 242.3 354 49.2
vmacro01128 Vaccinium macrocarpon HOM05D005436 ORTHO05D006215 4.9e-61 239.2 311 54.7
HPP92_021381 Vanilla planifolia HOM05D005436 ORTHO05D006215 1.8e-60 237.3 349 49.3
arahy.Tifrunner.gnm1.ann1.RINP63 Arachis hypogaea HOM05D005436 ORTHO05D006215 4.1e-60 236.1 429 44.1
AUR62024292 Chenopodium quinoa HOM05D005436 ORTHO05D006215 1.2e-59 234.6 240 65.4
BcaB03g14825 Brassica carinata HOM05D005436 ORTHO05D006215 1.6e-59 234.2 169 65.7
SalBow2G2235 Salvia bowleyana HOM05D005436 ORTHO05D006215 5.0e-58 229.2 296 54.4
Pp3c16_22820 Physcomitrium patens HOM05D005436 ORTHO05D006215 2.5e-49 200.3 339 47.2
RcHm_v2.0_Chr7g0240871 Rosa chinensis HOM05D005436 ORTHO05D006215 7.5e-46 188.7 224 58.5
CDE04G1163 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 9.8e-46 188.3 215 47.0
Psat2g092560 Pisum sativum HOM05D005436 ORTHO05D006215 9.2e-44 181.8 187 52.9
Peaxi162Scf00128g00005 Petunia axillaris HOM05D005436 ORTHO05D006215 2.1e-43 180.6 243 55.1
CAN.G227.3 Capsicum annuum HOM05D005436 ORTHO05D006215 1.7e-42 177.6 193 49.2
Cc11_g15600 Coffea canephora HOM05D005436 ORTHO05D006215 2.5e-41 173.7 191 66.5
SMO334G0079 Selaginella moellendorffii HOM05D005436 ORTHO05D006215 5.6e-41 172.6 263 49.8
GSVIVG01004082001 Vitis vinifera HOM05D005436 ORTHO05D006215 2.8e-40 170.2 191 63.9
Os04g0476000 Oryza sativa ssp. japonica HOM05D005436 ORTHO05D006215 4.1e-36 156.4 287 45.3
AagrBONN_evm.TU.Sc2ySwM_344.5149 Anthoceros agrestis HOM05D005436 ORTHO05D006215 2.3e-34 150.6 296 43.9
FAN18G0478 Fragaria x ananassa HOM05D005436 ORTHO05D006215 2.8e-32 143.7 239 38.9
TPR.G38818 Trifolium pratense HOM05D005436 ORTHO05D006215 6.8e-31 139.0 146 50.7
FAN13G0137 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.2e-30 138.3 267 36.0
CBR_g41529 Chara braunii HOM05D005436 ORTHO05D006215 5.8e-30 136.0 132 49.2
TAR371G0429 Trochodendron aralioides HOM05D044080 ORTHO05D006215 4.9e-29 132.9 134 70.9
FAN08G0615 Fragaria x ananassa HOM05D005436 ORTHO05D006215 3.2e-28 130.2 243 36.6
CAN.G227.4 Capsicum annuum HOM05D005436 ORTHO05D006215 2.1e-27 127.5 162 63.6
TAR371G0328 Trochodendron aralioides HOM05D005436 ORTHO05D006215 6.9e-23 112.5 143 67.8
TAR314G0004 Trochodendron aralioides HOM05D005436 ORTHO05D006215 2.7e-19 100.5 149 40.9
TPR.G38771 Trifolium pratense HOM05D005436 ORTHO05D006215 2.3e-18 97.4 83 51.8
FvH4_5g38910 Fragaria vesca HOM05D005436 ORTHO05D006215 1.5e-17 94.7 107 43.9
TAR633G1814 Trochodendron aralioides HOM05D005436 ORTHO05D006215 2.5e-17 94.0 129 65.9
RcHm_v2.0_Chr4g0436601 Rosa chinensis HOM05D005436 ORTHO05D006215 1.3e-16 91.7 84 53.6
Psat0s3979g0040 Pisum sativum HOM05D003776 ORTHO05D004459 3.8e-13 80.1 49 77.6
TAR633G0170 Trochodendron aralioides HOM05D005436 ORTHO05D006215 9.3e-12 75.5 123 62.6
Zm00001eb344380 Zea mays HOM05D005436 ORTHO05D006215 2.7e-11 73.9 75 48.0
TAR314G0002 Trochodendron aralioides HOM05D005436 ORTHO05D006215 2.8e-08 63.9 40 67.5
RcHm_v2.0_Chr2g0120671 Rosa chinensis HOM05D009478 ORTHO05D010213 4.8e-08 63.2 40 65.0
AL3G40260 Arabidopsis lyrata HOM05D005436 ORTHO05D006215 4.0e-07 60.1 74 43.2
Hma1.2p1_0870F.1_g230930 Hydrangea macrophylla HOM05D005436 ORTHO05D006215 1.2e-06 58.5 46 69.6
RcHm_v2.0_Chr1g0318701 Rosa chinensis HOM05D005436 ORTHO05D006215 1.5e-06 58.2 56 53.6


User provided reference genes

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