Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G1259 Cannabis sativa HOM05D005448 ORTHO05D006405 3.4e-161 571.6 293 100.0
CANSAT11G2386 Cannabis sativa HOM05D005448 ORTHO05D006405 3.6e-134 481.9 308 84.7
Prupe.7G041400 Prunus persica HOM05D005448 ORTHO05D006405 5.9e-89 331.6 280 62.5
RcHm_v2.0_Chr7g0182771 Rosa chinensis HOM05D005448 ORTHO05D006405 2.3e-88 329.7 306 58.8
QL10p019149 Quercus lobata HOM05D005448 ORTHO05D006405 5.0e-88 328.6 312 59.0
Dinv10698 Davidia involucrata HOM05D005448 ORTHO05D006405 2.5e-87 326.2 273 63.0
Thecc.03G099500 Theobroma cacao HOM05D005448 ORTHO05D006405 5.6e-87 325.1 293 62.1
MD17G1029400 Malus domestica HOM05D005448 ORTHO05D006405 7.3e-87 324.7 279 61.6
Ciclev10020839m.g Citrus clementina HOM05D005448 ORTHO05D006405 3.6e-86 322.4 309 56.0
FvH4_5g14050 Fragaria vesca HOM05D005448 ORTHO05D006405 4.0e-85 318.9 286 60.8
Gohir.A11G033100 Gossypium hirsutum HOM05D005448 ORTHO05D006405 4.0e-85 318.9 298 59.4
Haze_07701 Corylus avellana HOM05D005448 ORTHO05D006405 5.2e-85 318.5 289 59.5
Atru.chr12.1057 Acer truncatum HOM05D005448 ORTHO05D006405 1.5e-84 317.0 293 58.7
Duzib205G1002 Durio zibethinus HOM05D005448 ORTHO05D006405 2.0e-84 316.6 289 61.2
RcHm_v2.0_Chr4g0399581 Rosa chinensis HOM05D005448 ORTHO05D006405 2.6e-84 316.2 306 58.2
GSVIVG01007889001 Vitis vinifera HOM05D005448 ORTHO05D006405 1.3e-83 313.9 304 58.9
FAN08G1797 Fragaria x ananassa HOM05D005448 ORTHO05D006405 1.7e-83 313.5 286 60.1
Actinidia38176 Actinidia chinensis HOM05D005448 ORTHO05D006405 2.2e-83 313.2 285 59.3
Potri.018G051500 Populus trichocarpa HOM05D005448 ORTHO05D006405 2.9e-83 312.8 280 60.4
Gohir.D11G036400 Gossypium hirsutum HOM05D005448 ORTHO05D006405 3.7e-83 312.4 296 59.1
Gorai.007G039200 Gossypium raimondii HOM05D005448 ORTHO05D006405 3.7e-83 312.4 296 59.1
Cpa.g.sc94.25 Carica papaya HOM05D005448 ORTHO05D006405 8.3e-83 311.2 294 58.5
Sabra18G0047800 Salix brachista HOM05D005448 ORTHO05D006405 8.3e-83 311.2 280 59.6
FAN18G0267 Fragaria x ananassa HOM05D005448 ORTHO05D006405 1.4e-82 310.5 286 59.8
GSVIVG01007888001 Vitis vinifera HOM05D005448 ORTHO05D006405 1.9e-82 310.1 304 58.2
PGR044G0604 Punica granatum HOM05D005448 ORTHO05D006405 3.3e-79 299.3 272 58.1
CiPaw.11G051600 Carya illinoinensis HOM05D005448 ORTHO05D006405 3.6e-78 295.8 307 53.7
HanXRQChr05g0157251 Helianthus annuus HOM05D005448 ORTHO05D006405 6.2e-78 295.0 292 54.8
CsaV3_6G039380 Cucumis sativus L. HOM05D005448 ORTHO05D006405 8.0e-78 294.7 287 57.8
MELO3C014255.2 Cucumis melo HOM05D005448 ORTHO05D006405 1.1e-77 294.3 287 57.5
Lalb_Chr07g0178271 Lupinus albus HOM05D005448 ORTHO05D006405 6.8e-77 291.6 291 55.0
Glyma.05G022400 Glycine max HOM05D005448 ORTHO05D006405 3.4e-76 289.3 304 52.0
Eucgr.F03643 Eucalyptus grandis HOM05D005448 ORTHO05D006405 4.4e-76 288.9 286 54.9
Nn3g17421 Nelumbo nucifera HOM05D005448 ORTHO05D006405 5.8e-76 288.5 289 54.3
Medtr4g109400 Medicago truncatula HOM05D005448 ORTHO05D006405 8.3e-75 284.6 301 52.5
MSTRG.11359 Avicennia marina HOM05D005448 ORTHO05D006405 4.1e-74 282.3 287 55.1
Lj5A104G41 Lonicera japonica HOM05D005448 ORTHO05D006405 4.1e-74 282.3 284 54.6
Sc25g0001780 Simmondsia chinensis HOM05D005448 ORTHO05D006405 4.1e-74 282.3 289 53.6
Manes.06G086000 Manihot esculenta HOM05D005448 ORTHO05D006405 5.4e-74 282.0 248 60.9
Rhsim12G0151600 Rhododendron simsii HOM05D005448 ORTHO05D006405 5.4e-74 282.0 273 56.8
Cc04_g13190 Coffea canephora HOM05D005448 ORTHO05D006405 2.7e-73 279.6 291 54.0
Cc04_g16850 Coffea canephora HOM05D005448 ORTHO05D006405 3.5e-73 279.3 291 54.0
TPR.G2023 Trifolium pratense HOM05D005448 ORTHO05D006405 3.5e-73 279.3 301 51.8
Hund02597 Selenicereus undatus HOM05D005448 ORTHO05D006405 4.6e-73 278.9 271 57.2
SGA_v2.0_scaffold313G48306 Striga asiatica HOM05D005448 ORTHO05D006405 1.0e-72 277.7 288 51.4
TWI53G0232 Tripterygium wilfordii HOM05D005448 ORTHO05D006405 1.7e-72 276.9 271 55.0
Sp6g34990 Schrenkiella parvula HOM05D005448 ORTHO05D006405 2.3e-72 276.6 269 55.4
Sopen06g026800 Solanum pennellii HOM05D005448 ORTHO05D006405 3.0e-72 276.2 287 55.4
FAN13G0193 Fragaria x ananassa HOM05D005448 ORTHO05D006405 6.6e-72 275.0 260 58.5
CSS0038496 Camellia sinensis var. sinensis HOM05D005448 ORTHO05D006405 1.5e-71 273.9 273 54.6
ECA246G3555 Erigeron canadensis HOM05D005448 ORTHO05D006405 1.5e-71 273.9 277 53.1
Migut.E01012 Erythranthe guttata HOM05D005448 ORTHO05D006405 1.9e-71 273.5 285 53.7
Lj4g0022538 Lotus japonicus HOM05D005448 ORTHO05D006405 2.1e-70 270.0 304 51.0
TAR636G2978 Trochodendron aralioides HOM05D005448 ORTHO05D006405 2.8e-70 269.6 273 53.1
PGSC0003DMG400033055 Solanum tuberosum HOM05D005448 ORTHO05D006405 8.1e-70 268.1 287 53.3
CARHR205240 Cardamine hirsuta HOM05D005448 ORTHO05D006405 1.1e-69 267.7 301 51.5
BraA02t04938Z Brassica rapa HOM05D005448 ORTHO05D006405 3.1e-69 266.2 269 53.9
Phvul.003G185700 Phaseolus vulgaris HOM05D005448 ORTHO05D006405 3.1e-69 266.2 306 48.7
Psat4g047920 Pisum sativum HOM05D005448 ORTHO05D006405 3.1e-69 266.2 304 50.0
Aa31LG3G18560 Aethionema arabicum HOM05D005448 ORTHO05D006405 1.5e-68 263.8 275 53.5
AL6G18290 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 3.4e-68 262.7 282 52.8
Solyc06g069510.3 Solanum lycopersicum HOM05D005448 ORTHO05D006405 4.4e-68 262.3 271 56.5
AT5G07950 Arabidopsis thaliana HOM05D005448 ORTHO05D006405 7.5e-68 261.5 299 50.2
Thhalv10014193m.g Eutrema salsugineum HOM05D005448 ORTHO05D006405 7.5e-68 261.5 270 53.3
C02p03370 Brassica napus HOM05D005448 ORTHO05D006405 1.7e-67 260.4 269 53.2
BolC2t06299H Brassica oleracea HOM05D005448 ORTHO05D006405 1.7e-67 260.4 287 51.2
Carub.0006s0685 Capsella rubella HOM05D005448 ORTHO05D006405 2.9e-67 259.6 296 50.7
TAR371G1280 Trochodendron aralioides HOM05D005448 ORTHO05D006405 4.9e-67 258.8 275 51.6
BraA10t44915Z Brassica rapa HOM05D001913 ORTHO05D006405 8.3e-67 258.1 284 52.1
arahy.Tifrunner.gnm1.ann1.6AQ98N Arachis hypogaea HOM05D005448 ORTHO05D006405 1.4e-66 257.3 294 50.0
THA.LOC104801284 Tarenaya hassleriana HOM05D005448 ORTHO05D006405 1.4e-66 257.3 284 51.8
Dinv17396 Davidia involucrata HOM05D005448 ORTHO05D006405 1.9e-66 256.9 223 61.9
arahy.Tifrunner.gnm1.ann1.VF11UZ Arachis hypogaea HOM05D005448 ORTHO05D006405 2.4e-66 256.5 294 49.0
BcaB05g21593 Brassica carinata HOM05D005448 ORTHO05D006405 2.4e-66 256.5 291 48.8
SHI27027 Sapria himalayana HOM05D005448 ORTHO05D006405 2.4e-66 256.5 271 50.9
MD14G1210300 Malus domestica HOM05D005448 ORTHO05D006405 9.2e-66 254.6 289 51.2
CAN.G587.40 Capsicum annuum HOM05D005448 ORTHO05D006405 2.1e-65 253.4 289 50.2
Aqoxy3G03610 Aquilegia oxysepala HOM05D005448 ORTHO05D006405 2.7e-65 253.1 268 52.6
vmacro16506 Vaccinium macrocarpon HOM05D005448 ORTHO05D006405 1.0e-64 251.1 375 45.6
Oeu001027.1 Olea europaea HOM05D005448 ORTHO05D006405 2.5e-63 246.5 242 55.8
PSO675G8542 Papaver somniferum HOM05D005448 ORTHO05D006405 2.5e-63 246.5 291 49.5
MBI17_g24520_MAGBIO Magnolia biondii HOM05D005448 ORTHO05D006405 5.6e-63 245.4 288 50.0
ClCG04G008840 Citrullus lanatus HOM05D005448 ORTHO05D006405 7.3e-63 245.0 287 51.6
BcaC03g13203 Brassica carinata HOM05D005448 ORTHO05D006405 1.6e-62 243.8 313 47.0
C09p68980 Brassica napus HOM05D006409 ORTHO05D006405 2.1e-62 243.4 276 50.4
AUR62021579 Chenopodium quinoa HOM05D005448 ORTHO05D006405 2.4e-61 240.0 286 49.0
Peaxi162Scf00013g00627 Petunia axillaris HOM05D005448 ORTHO05D006405 3.4e-60 236.1 284 48.6
Nitab4.5_0001688g0100 Nicotiana tabacum HOM05D005448 ORTHO05D006405 1.7e-59 233.8 256 54.7
ATR0064G115 Amborella trichopoda HOM05D005448 ORTHO05D006405 2.2e-59 233.4 255 49.8
A10p28660 Brassica napus HOM05D006409 ORTHO05D008250 6.4e-59 231.9 277 49.1
AUR62008511 Chenopodium quinoa HOM05D005448 ORTHO05D006405 6.4e-59 231.9 238 53.8
Nitab4.5_0000361g0060 Nicotiana tabacum HOM05D005448 ORTHO05D006405 7.3e-55 218.4 273 49.8
TWI73G0142 Tripterygium wilfordii HOM05D005448 ORTHO05D006405 7.3e-55 218.4 282 45.0
Os03g0213200 Oryza sativa ssp. japonica HOM05D005448 ORTHO05D006405 1.8e-53 213.8 299 42.1
BcaC06g32511 Brassica carinata HOM05D001913 ORTHO05D008250 4.0e-53 212.6 266 47.4
PSO541G3212 Papaver somniferum HOM05D005448 ORTHO05D006405 5.3e-53 212.2 288 44.1
DCAR_024881 Daucus carota HOM05D005448 ORTHO05D006405 2.2e-51 206.8 226 48.7
unitig_22.g5417 Utricularia gibba HOM05D005448 ORTHO05D006405 2.9e-51 206.5 283 43.5
Ah.02g113960 Amaranthus hybridus HOM05D005448 ORTHO05D006405 3.5e-49 199.5 269 46.1
Prupe.1G213800 Prunus persica HOM05D005448 ORTHO05D006405 6.0e-49 198.7 195 55.9
Zm00001eb400290 Zea mays HOM05D005448 ORTHO05D006405 1.0e-48 198.0 273 41.4
Zm00001eb400320 Zea mays HOM05D005448 ORTHO05D006405 5.6e-47 192.2 267 42.3
Ca_21785_v3 Cicer arietinum L. HOM05D005448 ORTHO05D006405 1.1e-45 188.0 181 56.9
DCAR_011598 Daucus carota HOM05D005448 ORTHO05D006405 1.2e-41 174.5 229 45.9
Sed0024402 Sechium edule HOM05D005448 ORTHO05D006405 1.6e-41 174.1 190 54.7
HPP92_004716 Vanilla planifolia HOM05D005448 ORTHO05D006405 1.8e-37 160.6 225 42.2
VMungo1215G2784 Vigna mungo HOM05D005448 ORTHO05D006405 1.3e-35 154.5 166 49.4
FvH4_5g14150 Fragaria vesca HOM05D005448 ORTHO05D006405 3.9e-32 142.9 133 56.4
Mapoly0011s0155 Marchantia polymorpha HOM05D005448 ORTHO05D006405 1.5e-28 131.0 279 34.4
SEGI_17550 Sequoiadendron giganteum HOM05D005448 ORTHO05D006405 1.7e-27 127.5 158 45.6
SMO356G0523 Selaginella moellendorffii HOM05D005448 ORTHO05D006405 4.2e-26 122.9 257 32.7
AL3G46610 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 4.3e-23 112.8 137 48.2
Lsat_1_v5_gn_5_23221 Lactuca sativa HOM05D005448 ORTHO05D006405 5.3e-21 105.9 206 34.5
AL3G43910 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 9.0e-21 105.1 130 48.5
BolC4t27763H Brassica oleracea HOM05D005448 ORTHO05D006405 1.0e-19 101.7 195 37.4
BcaC02g07836 Brassica carinata HOM05D005448 ORTHO05D006405 8.5e-19 98.6 182 37.9
VMungo1215G1798 Vigna mungo HOM05D005448 ORTHO05D006405 5.5e-18 95.9 90 57.8
C04p62800 Brassica napus HOM05D005448 ORTHO05D006405 9.4e-18 95.1 176 37.5
AL1G28800 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 2.1e-17 94.0 101 50.5
CBR_g39231 Chara braunii HOM05D005448 ORTHO05D006405 3.3e-15 86.7 163 34.4
HPP92_004728 Vanilla planifolia HOM05D005448 ORTHO05D006405 3.3e-15 86.7 168 36.3
Glyma.17G077251 Glycine max HOM05D005448 ORTHO05D006405 2.8e-14 83.6 96 47.9
VMungo0464G0610 Vigna mungo HOM05D005448 ORTHO05D006405 6.3e-14 82.4 86 54.7
Pp3c17_6410 Physcomitrium patens HOM05D005448 ORTHO05D006405 1.4e-13 81.3 224 30.8
AL1G43330 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 6.9e-13 79.0 84 52.4
AL4G20140 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 6.9e-13 79.0 84 52.4
SEGI_09353 Sequoiadendron giganteum HOM05D005448 ORTHO05D006405 3.4e-12 76.6 87 47.1
GSVIVG01007748001 Vitis vinifera HOM05D005448 ORTHO05D006405 3.4e-12 76.6 53 73.6
GSVIVG01007746001 Vitis vinifera HOM05D005448 ORTHO05D006405 2.2e-11 73.9 62 56.5
BolC9t59642H Brassica oleracea HOM05D005448 ORTHO05D006405 3.8e-11 73.2 59 57.6
AL6G22380 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 8.5e-11 72.0 150 35.3
Actinidia19002 Actinidia chinensis HOM05D005448 ORTHO05D006405 5.5e-10 69.3 69 59.4
Carub.0006s0684 Capsella rubella HOM05D005448 ORTHO05D006405 1.6e-09 67.8 176 30.7
AL3G19900 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 7.9e-09 65.5 64 51.6
AL7G18100 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 7.9e-09 65.5 64 51.6
A04p25650 Brassica napus HOM05D005448 ORTHO05D006405 1.8e-08 64.3 78 48.7
BraA04t18069Z Brassica rapa HOM05D005448 ORTHO05D006405 1.8e-08 64.3 78 48.7
VMungo0647G2219 Vigna mungo HOM05D005448 ORTHO05D006405 3.0e-08 63.5 178 30.9
AL5G40680 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.7e-06 57.8 132 34.1


User provided reference genes

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