Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G1229 Cannabis sativa HOM05D005726 ORTHO05D001733 1.1e-75 286.6 151 100.0
CANSAT25G0582 Cannabis sativa HOM05D005726 ORTHO05D001733 1.8e-44 183.0 149 65.8
Cfa013952 Carpinus fangiana HOM05D005726 ORTHO05D001733 2.3e-36 156.0 150 50.7
QL02p011637 Quercus lobata HOM05D005726 ORTHO05D001733 1.5e-35 153.3 150 49.3
Haze_22635 Corylus avellana HOM05D005726 ORTHO05D001733 2.8e-34 149.1 150 48.7
CiPaw.07G149600 Carya illinoinensis HOM05D005726 ORTHO05D001733 5.3e-33 144.8 149 49.0
Sed0021833 Sechium edule HOM05D005726 ORTHO05D001733 7.7e-32 141.0 150 45.3
Thecc.08G044700 Theobroma cacao HOM05D005726 ORTHO05D001733 1.6e-29 133.3 151 45.7
Gorai.010G004200 Gossypium raimondii HOM05D005726 ORTHO05D001733 4.6e-29 131.7 150 46.0
Gohir.A06G004000 Gossypium hirsutum HOM05D005726 ORTHO05D001733 7.9e-29 131.0 150 46.0
Gohir.D06G006900 Gossypium hirsutum HOM05D005726 ORTHO05D001733 1.0e-28 130.6 150 45.3
RcHm_v2.0_Chr6g0302871 Rosa chinensis HOM05D005726 ORTHO05D001733 5.1e-28 128.3 132 49.2
Potri.002G022100 Populus trichocarpa HOM05D005726 ORTHO05D001733 1.3e-26 123.6 148 42.6
Manes.05G147300 Manihot esculenta HOM05D005726 ORTHO05D001733 2.8e-26 122.5 148 43.9
MBI05_g33718_MAGBIO Magnolia biondii HOM05D005726 ORTHO05D001733 1.8e-25 119.8 149 40.3
Glyma.04G024200 Glycine max HOM05D005726 ORTHO05D001733 2.4e-25 119.4 150 45.3
Phvul.009G017000 Phaseolus vulgaris HOM05D005726 ORTHO05D001733 6.9e-25 117.9 150 43.3
CsaV3_2G029540 Cucumis sativus L. HOM05D005726 ORTHO05D001733 1.5e-24 116.7 150 41.3
Nn5g30142 Nelumbo nucifera HOM05D005726 ORTHO05D001733 1.5e-24 116.7 148 40.5
Cpa.g.sc26.44 Carica papaya HOM05D005726 ORTHO05D001733 2.0e-24 116.3 139 43.2
TAR625G1501 Trochodendron aralioides HOM05D005726 ORTHO05D001733 3.4e-24 115.5 149 38.3
MD08G1013100 Malus domestica HOM05D005726 ORTHO05D001733 1.3e-23 113.6 149 45.6
Lalb_Chr11g0061921 Lupinus albus HOM05D005726 ORTHO05D001733 1.7e-23 113.2 148 41.9
Nn1g05896 Nelumbo nucifera HOM05D005726 ORTHO05D001733 1.7e-23 113.2 149 38.3
PSO170G6562 Papaver somniferum HOM05D005726 ORTHO05D001733 5.0e-23 111.7 149 38.3
Atru.chr13.290 Acer truncatum HOM05D005726 ORTHO05D001733 6.5e-23 111.3 145 41.4
Potri.009G129301 Populus trichocarpa HOM05D005726 ORTHO05D001733 6.5e-23 111.3 149 40.3
Atru.chr5.3224 Acer truncatum HOM05D005726 ORTHO05D001733 8.5e-23 110.9 142 41.5
VMungo1309G2498 Vigna mungo HOM05D005726 ORTHO05D001733 4.2e-22 108.6 150 42.7
AL8G19700 Arabidopsis lyrata HOM05D005726 ORTHO05D001733 1.2e-21 107.1 150 38.7
Thecc.02G067200 Theobroma cacao HOM05D005726 ORTHO05D001733 1.2e-21 107.1 148 39.9
TWI56G0219 Tripterygium wilfordii HOM05D005726 ORTHO05D001733 1.6e-21 106.7 146 39.7
AL8G19720 Arabidopsis lyrata HOM05D005726 ORTHO05D001733 2.1e-21 106.3 150 38.7
Ciclev10003161m.g Citrus clementina HOM05D005726 ORTHO05D001733 2.1e-21 106.3 143 39.9
Ciclev10029543m.g Citrus clementina HOM05D005726 ORTHO05D001733 2.1e-21 106.3 143 42.7
AT5G42146 Arabidopsis thaliana HOM05D005726 ORTHO05D001733 4.7e-21 105.1 148 38.5
Cfa005182 Carpinus fangiana HOM05D005726 ORTHO05D001733 6.1e-21 104.8 146 38.4
Ciclev10029854m.g Citrus clementina HOM05D005726 ORTHO05D001733 6.1e-21 104.8 143 42.0
Eucgr.F00586 Eucalyptus grandis HOM05D005726 ORTHO05D001733 7.9e-21 104.4 150 37.3
BolC9t54179H Brassica oleracea HOM05D005726 ORTHO05D001733 1.0e-20 104.0 145 37.2
BcaB07g31777 Brassica carinata HOM05D005726 ORTHO05D001733 1.4e-20 103.6 145 35.9
BcaC04g23031 Brassica carinata HOM05D005726 ORTHO05D001733 1.4e-20 103.6 145 37.2
C09p12890 Brassica napus HOM05D005726 ORTHO05D001733 1.4e-20 103.6 145 37.2
CARHR284740 Cardamine hirsuta HOM05D005726 ORTHO05D001733 1.4e-20 103.6 143 37.1
Migut.N01283 Erythranthe guttata HOM05D005726 ORTHO05D001733 1.8e-20 103.2 143 42.7
RcHm_v2.0_Chr6g0245271 Rosa chinensis HOM05D005726 ORTHO05D001733 1.8e-20 103.2 147 38.8
THA.LOC104821582 Tarenaya hassleriana HOM05D005726 ORTHO05D001733 2.3e-20 102.8 151 35.1
TAR376G0138 Trochodendron aralioides HOM05D005726 ORTHO05D001733 2.3e-20 102.8 135 40.0
Haze_02200 Corylus avellana HOM05D005726 ORTHO05D001733 3.9e-20 102.1 146 37.0
Duzib132G0889 Durio zibethinus HOM05D005726 ORTHO05D001733 3.9e-20 102.1 145 38.6
A09p10920 Brassica napus HOM05D005726 ORTHO05D001733 5.2e-20 101.7 145 36.6
BraA09t36732Z Brassica rapa HOM05D005726 ORTHO05D001733 5.2e-20 101.7 145 36.6
Potri.004G167800 Populus trichocarpa HOM05D005726 ORTHO05D001733 5.2e-20 101.7 150 37.3
Carub.0008s0720 Capsella rubella HOM05D005726 ORTHO05D001733 2.0e-19 99.8 148 37.8
Gohir.A12G039400 Gossypium hirsutum HOM05D005726 ORTHO05D001733 2.6e-19 99.4 145 35.9
Cpa.g.sc37.193 Carica papaya HOM05D005726 ORTHO05D001733 3.3e-19 99.0 145 38.6
Sp2g14650 Schrenkiella parvula HOM05D005726 ORTHO05D001733 5.7e-19 98.2 145 35.2
Gohir.D12G033000 Gossypium hirsutum HOM05D005726 ORTHO05D001733 7.4e-19 97.8 145 37.2
Gorai.008G033800 Gossypium raimondii HOM05D005726 ORTHO05D001733 7.4e-19 97.8 145 37.2
ATR0810G150 Amborella trichopoda HOM05D005726 ORTHO05D001733 9.7e-19 97.4 149 34.2
MD10G1118100 Malus domestica HOM05D005726 ORTHO05D001733 1.3e-18 97.1 142 39.4
Prupe.1G365100 Prunus persica HOM05D005726 ORTHO05D001733 2.2e-18 96.3 149 40.9
COL.COLO4_17253 Corchorus olitorius HOM05D005726 ORTHO05D001733 2.8e-18 95.9 142 37.3
ClCG05G018250 Citrullus lanatus HOM05D005726 ORTHO05D001733 6.3e-18 94.7 146 39.0
DCAR_003698 Daucus carota HOM05D005726 ORTHO05D001733 6.3e-18 94.7 142 36.6
PGR031G2508 Punica granatum HOM05D005726 ORTHO05D001733 8.2e-18 94.4 151 37.7
Sed0014046 Sechium edule HOM05D005726 ORTHO05D001733 1.1e-17 94.0 132 40.9
MD05G1115600 Malus domestica HOM05D005726 ORTHO05D001733 1.4e-17 93.6 142 35.9
Prupe.8G160400 Prunus persica HOM05D005726 ORTHO05D001733 1.4e-17 93.6 146 37.7
QL11p047517 Quercus lobata HOM05D005726 ORTHO05D001733 1.8e-17 93.2 148 35.8
CiPaw.05G077000 Carya illinoinensis HOM05D005726 ORTHO05D001733 4.1e-17 92.0 145 35.2
Ah.11g039720 Amaranthus hybridus HOM05D005726 ORTHO05D001733 5.3e-17 91.7 143 37.8
Medtr3g113930 Medicago truncatula HOM05D005726 ORTHO05D001733 9.1e-17 90.9 122 44.3
MBI05_g46327_MAGBIO Magnolia biondii HOM05D005726 ORTHO05D001733 1.6e-16 90.1 129 37.2
CsaV3_3G045890 Cucumis sativus L. HOM05D005726 ORTHO05D001733 3.5e-16 89.0 144 39.6
TPR.G34542 Trifolium pratense HOM05D005726 ORTHO05D001733 3.5e-16 89.0 122 41.8
MELO3C003749.2 Cucumis melo HOM05D005726 ORTHO05D001733 4.5e-16 88.6 146 37.0
Lsat_1_v5_gn_2_9581 Lactuca sativa HOM05D005726 ORTHO05D001733 6.5e-15 84.7 142 33.8
EL10Ac1g02194 Beta vulgaris HOM05D005726 ORTHO05D001733 4.2e-14 82.0 139 38.1
Manes.04G078400 Manihot esculenta HOM05D005726 ORTHO05D001733 5.5e-14 81.6 146 33.6
Cc02_g16550 Coffea canephora HOM05D005726 ORTHO05D001733 1.6e-13 80.1 148 35.1
SHI08068 Sapria himalayana HOM05D005726 ORTHO05D001733 2.1e-13 79.7 122 38.5
Lj1g0006182 Lotus japonicus HOM05D005726 ORTHO05D001733 2.7e-13 79.3 132 39.4
Oeu037538.1 Olea europaea HOM05D005726 ORTHO05D001733 8.0e-13 77.8 142 26.1
FAN04G1699 Fragaria x ananassa HOM05D005726 ORTHO05D001733 2.3e-12 76.3 125 36.0
Sabra09G0098800 Salix brachista HOM05D005726 ORTHO05D001733 2.3e-12 76.3 133 34.6
PGSC0003DMG400009937 Solanum tuberosum HOM05D005726 ORTHO05D001733 2.3e-12 76.3 149 30.9
Thhalv10015257m.g Eutrema salsugineum HOM05D005726 ORTHO05D001733 3.0e-12 75.9 143 33.6
Sopen04g035070 Solanum pennellii HOM05D005726 ORTHO05D001733 4.0e-12 75.5 149 30.2
Actinidia00594 Actinidia chinensis HOM05D005726 ORTHO05D001733 1.2e-11 73.9 76 44.7
Nitab4.5_0002561g0020 Nicotiana tabacum HOM05D005726 ORTHO05D001733 2.0e-11 73.2 142 29.6
Oeu027542.1 Olea europaea HOM05D005726 ORTHO05D001733 2.0e-11 73.2 142 26.1
BcaC03g17246 Brassica carinata HOM05D005726 ORTHO05D001733 2.6e-11 72.8 113 38.1
BolC2t11266H Brassica oleracea HOM05D005726 ORTHO05D001733 2.6e-11 72.8 113 38.1
A02p33660 Brassica napus HOM05D005726 ORTHO05D001733 4.4e-11 72.0 113 37.2
BraA02t08386Z Brassica rapa HOM05D005726 ORTHO05D001733 4.4e-11 72.0 113 37.2
Gorai.004G017800 Gossypium raimondii HOM05D003064 ORTHO05D001733 4.4e-11 72.0 122 37.7
C02p51810 Brassica napus HOM05D005726 ORTHO05D001733 5.7e-11 71.6 113 37.2
Gohir.D08G022500 Gossypium hirsutum HOM05D003064 ORTHO05D001733 7.5e-11 71.2 119 37.8
Gohir.A08G012000 Gossypium hirsutum HOM05D003064 ORTHO05D001733 9.7e-11 70.9 119 37.8
MBI05_g46324_MAGBIO Magnolia biondii HOM05D005726 ORTHO05D001733 6.3e-10 68.2 141 33.3
Zm00001eb210440 Zea mays HOM05D005726 ORTHO05D001733 8.2e-10 67.8 144 28.5
Sc15g0004980 Simmondsia chinensis HOM05D003064 ORTHO05D001733 4.1e-09 65.5 119 29.4
Lj4g0016221 Lotus japonicus HOM05D018548 ORTHO05D020752 5.3e-09 65.1 120 36.7
THA.LOC104807528 Tarenaya hassleriana HOM05D003064 ORTHO05D001733 5.3e-09 65.1 119 33.6
Gohir.A13G213900 Gossypium hirsutum HOM05D003064 ORTHO05D001733 9.1e-09 64.3 119 34.5
Gohir.D13G217700 Gossypium hirsutum HOM05D003064 ORTHO05D001733 9.1e-09 64.3 119 34.5
Gorai.013G248300 Gossypium raimondii HOM05D003064 ORTHO05D001733 9.1e-09 64.3 119 34.5
Eucgr.J01788 Eucalyptus grandis HOM05D003064 ORTHO05D001733 2.0e-08 63.2 119 31.9
MBI05_g33720_MAGBIO Magnolia biondii HOM05D003064 ORTHO05D001733 2.0e-08 63.2 99 36.4
TPR.G38487 Trifolium pratense HOM05D005726 ORTHO05D001733 2.0e-08 63.2 85 37.6
CiPaw.13G172000 Carya illinoinensis HOM05D003064 ORTHO05D001733 4.5e-08 62.0 119 33.6
Sed0019554 Sechium edule HOM05D005726 ORTHO05D001733 4.5e-08 62.0 138 26.1
THA.LOC104811059 Tarenaya hassleriana HOM05D003064 ORTHO05D001733 4.5e-08 62.0 119 31.9
TPR.G16147 Trifolium pratense HOM05D003064 ORTHO05D001733 4.5e-08 62.0 123 32.5
TAR623G1618 Trochodendron aralioides HOM05D003064 ORTHO05D001733 4.5e-08 62.0 118 33.9
Sed0014638 Sechium edule HOM05D005726 ORTHO05D001733 1.3e-07 60.5 138 26.8
RcHm_v2.0_Chr5g0081431 Rosa chinensis HOM05D003064 ORTHO05D001733 1.7e-07 60.1 117 31.6
SalBow8G4445 Salvia bowleyana HOM05D005726 ORTHO05D001733 2.2e-07 59.7 142 35.2
Glyma.02G258600 Glycine max HOM05D003064 ORTHO05D001733 2.9e-07 59.3 115 33.9
Nn2g15754 Nelumbo nucifera HOM05D003064 ORTHO05D001733 2.9e-07 59.3 117 29.9
Peaxi162Scf00438g00833 Petunia axillaris HOM05D005726 ORTHO05D001733 2.9e-07 59.3 142 26.1
ClCG02G023860 Citrullus lanatus HOM05D003064 ORTHO05D001733 3.8e-07 58.9 119 31.9
Glyma.14G053000 Glycine max HOM05D003064 ORTHO05D001733 3.8e-07 58.9 115 33.9
HanXRQChr02g0056621 Helianthus annuus HOM05D003064 ORTHO05D001733 3.8e-07 58.9 116 29.3
Medtr4g094472 Medicago truncatula HOM05D018548 ORTHO05D020752 3.8e-07 58.9 119 37.0
PGR042G3858 Punica granatum HOM05D005726 ORTHO05D001733 3.8e-07 58.9 143 28.0
Medtr3g117720 Medicago truncatula HOM05D005726 ORTHO05D001733 5.0e-07 58.5 72 40.3
PSO339G6128 Papaver somniferum HOM05D003064 ORTHO05D001733 5.0e-07 58.5 118 33.1
PSO384G3054 Papaver somniferum HOM05D003064 ORTHO05D001733 5.0e-07 58.5 118 33.1
VMungo0647G0318 Vigna mungo HOM05D003064 ORTHO05D001733 5.0e-07 58.5 119 34.5
Duzib150G0559 Durio zibethinus HOM05D003064 ORTHO05D001733 6.5e-07 58.2 119 34.5
Thecc.09G214300 Theobroma cacao HOM05D003064 ORTHO05D001733 6.5e-07 58.2 119 33.6
Prupe.6G010700 Prunus persica HOM05D003064 ORTHO05D001733 8.5e-07 57.8 115 32.2
TPR.G23812 Trifolium pratense HOM05D018548 ORTHO05D020752 8.5e-07 57.8 132 33.3
TAR369G0713 Trochodendron aralioides HOM05D003064 ORTHO05D001733 8.5e-07 57.8 118 30.5
Atru.chr11.2712 Acer truncatum HOM05D003064 ORTHO05D001733 1.1e-06 57.4 122 32.8
Lsat_1_v5_gn_8_125861 Lactuca sativa HOM05D005726 ORTHO05D001733 1.1e-06 57.4 62 43.5
Cfa005180 Carpinus fangiana HOM05D005726 ORTHO05D001733 1.9e-06 56.6 120 31.7
Glyma.08G158500 Glycine max HOM05D003064 ORTHO05D001733 1.9e-06 56.6 117 33.3
Glyma.12G024300 Glycine max HOM05D005726 ORTHO05D001733 1.9e-06 56.6 80 43.8
Medtr2g062220 Medicago truncatula HOM05D003064 ORTHO05D001733 1.9e-06 56.6 116 31.9
MELO3C014664.2 Cucumis melo HOM05D003064 ORTHO05D001733 3.2e-06 55.8 119 30.3
Glyma.15G267900 Glycine max HOM05D003064 ORTHO05D001733 3.2e-06 55.8 118 32.2
DCAR_006051 Daucus carota HOM05D005726 ORTHO05D001733 4.2e-06 55.5 131 27.5
Migut.N03162 Erythranthe guttata HOM05D005726 ORTHO05D001733 4.2e-06 55.5 142 26.1
LjContig00357g0022496 Lotus japonicus HOM05D003064 ORTHO05D001733 4.2e-06 55.5 115 31.3
ATR0598G068 Amborella trichopoda HOM05D003064 ORTHO05D001733 5.5e-06 55.1 115 30.4
BcaB02g10426 Brassica carinata HOM05D003064 ORTHO05D001733 5.5e-06 55.1 120 31.7
BcaC02g11300 Brassica carinata HOM05D003064 ORTHO05D001733 5.5e-06 55.1 120 31.7
C04p17820 Brassica napus HOM05D003064 ORTHO05D001733 5.5e-06 55.1 120 31.7
BolC4t23330H Brassica oleracea HOM05D003064 ORTHO05D001733 5.5e-06 55.1 120 31.7
CsaV3_7G031520 Cucumis sativus L. HOM05D003064 ORTHO05D001733 5.5e-06 55.1 116 31.9
Glyma.08G079700 Glycine max HOM05D018548 ORTHO05D020752 5.5e-06 55.1 130 35.4
Phvul.005G042500 Phaseolus vulgaris HOM05D003064 ORTHO05D001733 5.5e-06 55.1 118 33.1
BcaB01g04824 Brassica carinata HOM05D003064 ORTHO05D001733 7.2e-06 54.7 119 31.1
A05p13650 Brassica napus HOM05D003064 ORTHO05D001733 7.2e-06 54.7 120 31.7
BolC3t13597H Brassica oleracea HOM05D003064 ORTHO05D001733 7.2e-06 54.7 119 31.1
BraA03t10285Z Brassica rapa HOM05D003064 ORTHO05D001733 7.2e-06 54.7 119 31.1
BraA05t20303Z Brassica rapa HOM05D003064 ORTHO05D001733 7.2e-06 54.7 120 31.7
Eucgr.B03628 Eucalyptus grandis HOM05D003064 ORTHO05D001733 7.2e-06 54.7 119 31.9
MD11G1012600 Malus domestica HOM05D003064 ORTHO05D001733 7.2e-06 54.7 115 30.4
THA.LOC104826176 Tarenaya hassleriana HOM05D003064 ORTHO05D001733 7.2e-06 54.7 115 33.0
AT2G31940 Arabidopsis thaliana HOM05D003064 ORTHO05D001733 9.4e-06 54.3 121 31.4
Ciclev10029583m.g Citrus clementina HOM05D007714 ORTHO05D009659 9.4e-06 54.3 121 29.8
Phvul.008G217700 Phaseolus vulgaris HOM05D003064 ORTHO05D001733 9.4e-06 54.3 115 33.0


User provided reference genes

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