Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G1212 Cannabis sativa HOM05D006747 ORTHO05D008384 1.2e-144 516.5 270 100.0
Cfa002442 Carpinus fangiana HOM05D006747 ORTHO05D008384 7.3e-110 401.0 269 74.7
RcHm_v2.0_Chr6g0287851 Rosa chinensis HOM05D006747 ORTHO05D008384 1.4e-108 396.7 269 77.0
GSVIVG01028355001 Vitis vinifera HOM05D006747 ORTHO05D008384 5.3e-108 394.8 260 75.4
Thecc.01G256100 Theobroma cacao HOM05D006747 ORTHO05D008384 1.3e-106 390.2 262 74.8
Potri.005G225900 Populus trichocarpa HOM05D006747 ORTHO05D008384 8.4e-106 387.5 274 72.6
MD05G1195200 Malus domestica HOM05D006747 ORTHO05D008384 1.4e-105 386.7 263 73.8
Dinv22393 Davidia involucrata HOM05D006747 ORTHO05D008384 4.2e-105 385.2 263 73.8
Gorai.007G147500 Gossypium raimondii HOM05D006747 ORTHO05D008384 2.7e-104 382.5 260 74.2
Sabra05G0174300 Salix brachista HOM05D006747 ORTHO05D008384 2.7e-104 382.5 275 72.4
Gohir.D11G137550 Gossypium hirsutum HOM05D006747 ORTHO05D008384 7.9e-104 380.9 260 73.5
FAN27G0389 Fragaria x ananassa HOM05D006747 ORTHO05D008384 1.0e-103 380.6 271 73.4
TAR362G0605 Trochodendron aralioides HOM05D006747 ORTHO05D008384 1.0e-103 380.6 260 73.1
FAN15G1911 Fragaria x ananassa HOM05D006747 ORTHO05D008384 1.3e-103 380.2 273 73.3
Gohir.A11G131500 Gossypium hirsutum HOM05D006747 ORTHO05D008384 1.8e-103 379.8 260 73.8
Cc01_g18210 Coffea canephora HOM05D006747 ORTHO05D008384 3.0e-103 379.0 268 70.5
Atru.chr5.1716 Acer truncatum HOM05D006747 ORTHO05D008384 8.7e-103 377.5 266 72.6
Duzib138G0743 Durio zibethinus HOM05D006747 ORTHO05D008384 1.9e-102 376.3 264 72.0
Haze_24648 Corylus avellana HOM05D006747 ORTHO05D008384 3.3e-102 375.6 302 66.2
Ciclev10021655m.g Citrus clementina HOM05D006747 ORTHO05D008384 4.3e-102 375.2 267 70.4
Sopen06g003200 Solanum pennellii HOM05D006747 ORTHO05D008384 2.8e-101 372.5 269 69.9
CiPaw.03G265900 Carya illinoinensis HOM05D006747 ORTHO05D008384 4.8e-101 371.7 283 67.8
Phvul.007G192000 Phaseolus vulgaris HOM05D006747 ORTHO05D008384 4.8e-101 371.7 268 71.3
VMungo0720G1324 Vigna mungo HOM05D006747 ORTHO05D008384 4.8e-101 371.7 268 70.5
Solyc06g008350.3 Solanum lycopersicum HOM05D006747 ORTHO05D008384 6.2e-101 371.3 269 69.5
FAN20G2892 Fragaria x ananassa HOM05D006747 ORTHO05D008384 8.1e-101 370.9 275 71.3
COL.COLO4_04026 Corchorus olitorius HOM05D006747 ORTHO05D008384 1.1e-100 370.5 294 65.3
PGSC0003DMG400025504 Solanum tuberosum HOM05D006747 ORTHO05D008384 1.1e-100 370.5 269 69.5
Lj5g0027576 Lotus japonicus HOM05D006747 ORTHO05D008384 1.4e-100 370.2 268 70.5
Actinidia30159 Actinidia chinensis HOM05D006747 ORTHO05D008384 9.0e-100 367.5 268 69.8
CSS0000886 Camellia sinensis var. sinensis HOM05D006747 ORTHO05D008384 9.0e-100 367.5 266 71.8
Peaxi162Scf00987g00036 Petunia axillaris HOM05D006747 ORTHO05D008384 1.5e-99 366.7 260 70.8
TPR.G35130 Trifolium pratense HOM05D006747 ORTHO05D008384 1.5e-99 366.7 268 69.0
Glyma.06G315300 Glycine max HOM05D006747 ORTHO05D008384 2.6e-99 365.9 276 68.1
Eucgr.B01566 Eucalyptus grandis HOM05D006747 ORTHO05D008384 1.7e-98 363.2 237 73.4
Psat6g054040 Pisum sativum HOM05D006747 ORTHO05D008384 2.2e-98 362.8 269 69.5
Lalb_Chr06g0170541 Lupinus albus HOM05D006747 ORTHO05D008384 8.4e-98 360.9 268 69.4
Lsat_1_v5_gn_5_182940 Lactuca sativa HOM05D006747 ORTHO05D008384 4.2e-97 358.6 265 68.3
MBI07_g16913_MAGBIO Magnolia biondii HOM05D006747 ORTHO05D008384 4.2e-97 358.6 256 69.5
Rhsim13G0036000 Rhododendron simsii HOM05D006747 ORTHO05D008384 4.2e-97 358.6 243 71.6
Aqoxy2G03665 Aquilegia oxysepala HOM05D006747 ORTHO05D008384 2.1e-96 356.3 237 73.8
Migut.D00438 Erythranthe guttata HOM05D006747 ORTHO05D008384 2.1e-96 356.3 235 72.3
Medtr1g069790 Medicago truncatula HOM05D006747 ORTHO05D008384 6.0e-96 354.8 269 66.9
PSO063G2179 Papaver somniferum HOM05D006747 ORTHO05D008384 6.0e-96 354.8 274 67.5
SalBow4G0984 Salvia bowleyana HOM05D006747 ORTHO05D008384 7.9e-96 354.4 265 67.9
arahy.Tifrunner.gnm1.ann1.0525TE Arachis hypogaea HOM05D006747 ORTHO05D008384 3.0e-95 352.4 270 67.0
arahy.Tifrunner.gnm1.ann1.EQ4JVG Arachis hypogaea HOM05D006747 ORTHO05D008384 3.0e-95 352.4 270 67.0
Manes.12G033600 Manihot esculenta HOM05D006747 ORTHO05D008384 4.3e-94 348.6 225 76.0
PGR031G3840 Punica granatum HOM05D006747 ORTHO05D008384 2.1e-93 346.3 220 75.5
HanXRQChr09g0254271 Helianthus annuus HOM05D006747 ORTHO05D008384 3.7e-93 345.5 266 66.9
vmacro02672 Vaccinium macrocarpon HOM05D006747 ORTHO05D008384 6.2e-93 344.7 322 57.5
DCAR_012556 Daucus carota HOM05D006747 ORTHO05D008384 4.1e-92 342.0 268 64.9
Sp3g33710 Schrenkiella parvula HOM05D006747 ORTHO05D008384 5.3e-92 341.7 241 67.2
MSTRG.21486 Avicennia marina HOM05D006747 ORTHO05D008384 1.5e-91 340.1 240 70.8
EL10As5g23483 Beta vulgaris HOM05D006747 ORTHO05D008384 2.0e-91 339.7 245 68.6
Thhalv10002060m.g Eutrema salsugineum HOM05D006747 ORTHO05D008384 2.6e-91 339.3 278 61.5
AL3G53500 Arabidopsis lyrata HOM05D006747 ORTHO05D008384 3.4e-91 339.0 241 67.2
ATR0736G001 Amborella trichopoda HOM05D006747 ORTHO05D008384 5.8e-91 338.2 270 62.6
CsaV3_7G027040 Cucumis sativus L. HOM05D006747 ORTHO05D008384 2.2e-90 336.3 235 69.4
AT2G20495 Arabidopsis thaliana HOM05D006747 ORTHO05D008384 5.0e-90 335.1 251 64.9
BraA07t27816Z Brassica rapa HOM05D006747 ORTHO05D008384 5.0e-90 335.1 240 66.7
Carub.0003s3494 Capsella rubella HOM05D006747 ORTHO05D008384 1.9e-89 333.2 278 59.7
Prupe.8G221800 Prunus persica HOM05D006747 ORTHO05D008384 1.9e-89 333.2 269 66.5
CARHR111050 Cardamine hirsuta HOM05D006747 ORTHO05D008384 2.5e-89 332.8 248 65.3
AUR62011854 Chenopodium quinoa HOM05D006747 ORTHO05D008384 3.2e-89 332.4 268 63.4
Os07g0458800 Oryza sativa ssp. japonica HOM05D006747 ORTHO05D008384 3.2e-89 332.4 251 64.5
BcaC06g36739 Brassica carinata HOM05D006747 ORTHO05D008384 4.2e-89 332.0 240 66.2
THA.LOC104804045 Tarenaya hassleriana HOM05D006747 ORTHO05D008384 4.2e-89 332.0 282 61.7
SGA_v2.0_scaffold138G35213 Striga asiatica HOM05D006747 ORTHO05D008384 3.5e-88 328.9 284 62.0
C07p00520 Brassica napus HOM05D006747 ORTHO05D008384 6.1e-88 328.2 236 66.5
BolC7t40498H Brassica oleracea HOM05D006747 ORTHO05D008384 1.0e-87 327.4 241 66.0
CDE06G1525 Ceratophyllum demersum HOM05D006747 ORTHO05D008384 1.3e-87 327.0 258 62.0
MELO3C012750.2 Cucumis melo HOM05D006747 ORTHO05D008384 1.3e-87 327.0 274 62.0
FAN24G2059 Fragaria x ananassa HOM05D006747 ORTHO05D008384 3.0e-87 325.9 273 65.6
Aa31LG8G17440 Aethionema arabicum HOM05D006747 ORTHO05D008384 5.1e-87 325.1 255 63.1
Zm00001eb384950 Zea mays HOM05D006747 ORTHO05D008384 1.1e-86 323.9 268 62.3
Lj1C68G8 Lonicera japonica HOM05D003718 ORTHO05D004402 2.5e-86 322.8 211 75.4
BcaB03g16845 Brassica carinata HOM05D006747 ORTHO05D008384 4.3e-86 322.0 269 60.6
CAN.G941.16 Capsicum annuum HOM05D006747 ORTHO05D008384 4.8e-85 318.5 210 75.2
Sc17g0000600 Simmondsia chinensis HOM05D006747 ORTHO05D008384 1.4e-84 317.0 210 72.9
unitig_8.g3882 Utricularia gibba HOM05D006747 ORTHO05D008384 7.7e-83 311.2 264 61.4
AUR62024699 Chenopodium quinoa HOM05D006747 ORTHO05D008384 3.8e-82 308.9 243 62.1
Nn1g02801 Nelumbo nucifera HOM05D006747 ORTHO05D008384 2.0e-78 296.6 269 59.5
HPP92_014756 Vanilla planifolia HOM05D006747 ORTHO05D008384 2.0e-78 296.6 211 68.2
Hma1.2p1_0273F.1_g109550 Hydrangea macrophylla HOM05D006747 ORTHO05D008384 2.2e-77 293.1 189 76.2
ECA248G1486 Erigeron canadensis HOM05D006747 ORTHO05D008384 2.6e-75 286.2 238 61.8
A07p00240 Brassica napus HOM05D006747 ORTHO05D008384 7.7e-75 284.6 240 60.0
ClCG09G008030 Citrullus lanatus HOM05D006747 ORTHO05D008384 2.1e-72 276.6 414 41.3
PSO017G5775 Papaver somniferum HOM05D006747 ORTHO05D008384 3.6e-72 275.8 274 56.6
Oeu035736.1 Olea europaea HOM05D006747 ORTHO05D008384 4.8e-69 265.4 178 71.3
Nitab4.5_0005593g0070 Nicotiana tabacum HOM05D006747 ORTHO05D008384 3.1e-68 262.7 210 64.8
AagrBONN_evm.TU.Sc2ySwM_228.388 Anthoceros agrestis HOM05D006747 ORTHO05D008384 3.5e-67 259.2 250 52.4
Mapoly0024s0028 Marchantia polymorpha HOM05D006747 ORTHO05D008384 1.4e-63 247.3 229 54.6
Nitab4.5_0000326g0130 Nicotiana tabacum HOM05D006747 ORTHO05D008384 2.6e-62 243.0 238 55.9
Pp3c11_10320 Physcomitrium patens HOM05D006747 ORTHO05D008384 2.6e-62 243.0 269 46.8
QL09p039580 Quercus lobata HOM05D006747 ORTHO05D008384 2.6e-62 243.0 181 70.7
HPP92_028089 Vanilla planifolia HOM05D006747 ORTHO05D008384 5.7e-62 241.9 171 67.8
Sed0026822 Sechium edule HOM05D006747 ORTHO05D008384 8.8e-55 218.0 184 63.0
SMO115G0001 Selaginella moellendorffii HOM05D006747 ORTHO05D008384 3.4e-54 216.1 231 49.8
FvH4_2g21270 Fragaria vesca HOM05D006747 ORTHO05D008384 3.0e-47 193.0 161 65.8
Ca_09674_v3 Cicer arietinum L. HOM05D006747 ORTHO05D008384 2.6e-46 189.9 173 58.4
QL09p039572 Quercus lobata HOM05D006747 ORTHO05D008384 3.5e-35 152.9 89 80.9
SEGI_35883 Sequoiadendron giganteum HOM05D006747 ORTHO05D008384 7.0e-28 128.6 89 69.7
CAN.G507.4 Capsicum annuum HOM05D006747 ORTHO05D008384 1.1e-23 114.8 73 72.6
Cpa.g.sc165.14 Carica papaya HOM05D006747 ORTHO05D008384 2.3e-23 113.6 83 75.9
Hma1.2p1_0273F.1_g109560 Hydrangea macrophylla HOM05D006747 ORTHO05D008384 4.9e-21 105.9 73 71.2
arahy.Tifrunner.gnm1.ann1.K1LLW7 Arachis hypogaea HOM05D006747 ORTHO05D008384 2.7e-19 100.1 58 82.8
SEGI_30594 Sequoiadendron giganteum HOM05D006747 ORTHO05D008384 3.9e-18 96.3 100 45.0
Actinidia34415 Actinidia chinensis HOM05D006747 ORTHO05D008384 5.8e-14 82.4 56 66.1
MD10G1182200 Malus domestica HOM05D006747 ORTHO05D008384 7.6e-14 82.0 70 58.6
Actinidia34401 Actinidia chinensis HOM05D006747 ORTHO05D008384 1.9e-12 77.4 54 64.8
Gohir.A07G213740 Gossypium hirsutum HOM05D006747 ORTHO05D008384 2.4e-12 77.0 150 36.7
SEGI_37670 Sequoiadendron giganteum HOM05D006747 ORTHO05D008384 9.2e-12 75.1 87 50.6
Cre07.g348951 Chlamydomonas reinhardtii HOM05D006747 ORTHO05D008384 3.0e-10 70.1 100 35.0
Duzib133G0415 Durio zibethinus HOM05D006747 ORTHO05D008384 3.0e-10 70.1 49 65.3
Actinidia23032 Actinidia chinensis HOM05D004842 ORTHO05D008384 1.2e-06 58.2 44 65.9
Gohir.A07G149550 Gossypium hirsutum HOM05D006747 ORTHO05D008384 4.4e-06 56.2 68 48.5


User provided reference genes

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