Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G0416 Cannabis sativa HOM05D006940 ORTHO05D008626 1.8e-56 222.2 104 100.0
CANSAT01G0831 Cannabis sativa HOM05D006940 ORTHO05D008626 1.8e-56 222.2 104 100.0
CANSAT01G1056 Cannabis sativa HOM05D006940 ORTHO05D008626 1.8e-56 222.2 104 100.0
Prupe.8G192000 Prunus persica HOM05D006940 ORTHO05D008626 7.4e-26 120.6 115 56.5
RcHm_v2.0_Chr6g0283181 Rosa chinensis HOM05D006940 ORTHO05D008626 4.8e-25 117.9 115 53.9
Gohir.A07G197033 Gossypium hirsutum HOM05D006940 ORTHO05D008626 6.2e-25 117.5 97 55.7
MD10G1153200 Malus domestica HOM05D006940 ORTHO05D008626 6.2e-25 117.5 112 58.0
Thecc.01G212400 Theobroma cacao HOM05D006940 ORTHO05D008626 1.1e-24 116.7 102 56.9
FAN24G1170 Fragaria x ananassa HOM05D006940 ORTHO05D008626 1.4e-24 116.3 113 54.0
FvH4_2g17950 Fragaria vesca HOM05D006940 ORTHO05D008626 1.8e-24 115.9 113 54.0
FAN15G1530 Fragaria x ananassa HOM05D006940 ORTHO05D008626 1.8e-24 115.9 113 54.0
Gorai.N003800 Gossypium raimondii HOM05D006940 ORTHO05D008626 1.8e-24 115.9 99 56.6
MD05G1163400 Malus domestica HOM05D006940 ORTHO05D008626 1.8e-24 115.9 104 55.8
Potri.002G249901 Populus trichocarpa HOM05D006940 ORTHO05D008626 1.8e-24 115.9 111 55.9
DCAR_012690 Daucus carota HOM05D000328 ORTHO05D008626 2.4e-24 115.5 75 66.7
Gohir.D07G166700 Gossypium hirsutum HOM05D006940 ORTHO05D008626 3.1e-24 115.2 101 58.4
Gorai.001G228900 Gossypium raimondii HOM05D006940 ORTHO05D008626 3.1e-24 115.2 99 58.6
Gohir.D07G203400 Gossypium hirsutum HOM05D006940 ORTHO05D008626 4.1e-24 114.8 97 55.7
Gorai.007G158800 Gossypium raimondii HOM05D006940 ORTHO05D008626 5.3e-24 114.4 101 58.4
MELO3C021111.2 Cucumis melo HOM05D006940 ORTHO05D008626 6.9e-24 114.0 58 81.0
CsaV3_7G026610 Cucumis sativus L. HOM05D006940 ORTHO05D008626 6.9e-24 114.0 71 66.2
Eucgr.K02098 Eucalyptus grandis HOM05D006940 ORTHO05D008626 6.9e-24 114.0 102 54.9
Gohir.A07G159700 Gossypium hirsutum HOM05D006940 ORTHO05D008626 6.9e-24 114.0 99 57.6
SalBow7G1139 Salvia bowleyana HOM05D006940 ORTHO05D008626 9.0e-24 113.6 65 76.9
Duzib138G0498 Durio zibethinus HOM05D006940 ORTHO05D008626 1.5e-23 112.8 98 55.1
Atru.chr6.1604 Acer truncatum HOM05D006940 ORTHO05D008626 2.0e-23 112.5 72 68.1
CARHR218280 Cardamine hirsuta HOM05D006940 ORTHO05D008626 2.6e-23 112.1 102 53.9
Haze_03308 Corylus avellana HOM05D006940 ORTHO05D008626 2.6e-23 112.1 50 92.0
Dinv28817 Davidia involucrata HOM05D006940 ORTHO05D008626 2.6e-23 112.1 50 92.0
Thhalv10026516m.g Eutrema salsugineum HOM05D006940 ORTHO05D008626 2.6e-23 112.1 50 92.0
FAN27G2163 Fragaria x ananassa HOM05D006940 ORTHO05D008626 3.4e-23 111.7 113 53.1
Gohir.A11G141800 Gossypium hirsutum HOM05D006940 ORTHO05D008626 3.4e-23 111.7 61 75.4
Hma1.2p1_0781F.1_g216880 Hydrangea macrophylla HOM05D006940 ORTHO05D008626 3.4e-23 111.7 49 91.8
Nitab4.5_0003186g0010 Nicotiana tabacum HOM05D006940 ORTHO05D008626 3.4e-23 111.7 111 52.3
Sed0013755 Sechium edule HOM05D006940 ORTHO05D008626 3.4e-23 111.7 83 65.1
Duzib133G0939 Durio zibethinus HOM05D006940 ORTHO05D008626 4.5e-23 111.3 102 55.9
Manes.13G053500 Manihot esculenta HOM05D006940 ORTHO05D008626 4.5e-23 111.3 60 78.3
QL09p045850 Quercus lobata HOM05D006940 ORTHO05D008626 4.5e-23 111.3 79 62.0
Sabra02G0190300 Salix brachista HOM05D006940 ORTHO05D008626 4.5e-23 111.3 50 92.0
TWI36G1176 Tripterygium wilfordii HOM05D006940 ORTHO05D008626 4.5e-23 111.3 104 55.8
AL9U11560 Arabidopsis lyrata HOM05D006940 ORTHO05D008626 5.8e-23 110.9 102 54.9
Ciclev10033128m.g Citrus clementina HOM05D006940 ORTHO05D008626 5.8e-23 110.9 99 54.5
Gohir.D11G148100 Gossypium hirsutum HOM05D006940 ORTHO05D008626 7.6e-23 110.5 101 57.4
AT4G12970 Arabidopsis thaliana HOM05D006940 ORTHO05D008626 1.0e-22 110.2 102 54.9
arahy.Tifrunner.gnm1.ann1.ZA5GY6 Arachis hypogaea HOM05D006940 ORTHO05D008626 1.0e-22 110.2 63 73.0
Manes.12G052500 Manihot esculenta HOM05D006940 ORTHO05D008626 1.0e-22 110.2 110 50.0
Nn1g08072 Nelumbo nucifera HOM05D006940 ORTHO05D008626 1.0e-22 110.2 97 53.6
Psat0s1437g0080 Pisum sativum HOM05D006940 ORTHO05D008626 1.0e-22 110.2 50 90.0
CSS0043498 Camellia sinensis var. sinensis HOM05D006940 ORTHO05D008626 1.3e-22 109.8 53 84.9
Carub.0007s2980 Capsella rubella HOM05D006940 ORTHO05D008626 1.3e-22 109.8 102 54.9
SalBow6G3514 Salvia bowleyana HOM05D006940 ORTHO05D008626 1.3e-22 109.8 50 90.0
BcaB04g17733 Brassica carinata HOM05D006940 ORTHO05D008626 1.7e-22 109.4 50 90.0
A08p07220 Brassica napus HOM05D006940 ORTHO05D008626 1.7e-22 109.4 50 90.0
C08p08940 Brassica napus HOM05D006940 ORTHO05D008626 1.7e-22 109.4 50 90.0
BolC8t47738H Brassica oleracea HOM05D006940 ORTHO05D008626 1.7e-22 109.4 50 90.0
BraA08t32735Z Brassica rapa HOM05D006940 ORTHO05D008626 1.7e-22 109.4 50 90.0
Duzib211G0506 Durio zibethinus HOM05D006940 ORTHO05D008626 1.7e-22 109.4 101 51.5
Glyma.18G152800 Glycine max HOM05D006940 ORTHO05D008626 1.7e-22 109.4 98 53.1
Sp7g09835 Schrenkiella parvula HOM05D006940 ORTHO05D008626 1.7e-22 109.4 50 90.0
TAR365G0827 Trochodendron aralioides HOM05D006940 ORTHO05D008626 1.7e-22 109.4 105 51.4
vmacro02811 Vaccinium macrocarpon HOM05D006940 ORTHO05D008626 1.7e-22 109.4 49 87.8
Cpa.g.sc8.85 Carica papaya HOM05D006940 ORTHO05D008626 2.2e-22 109.0 98 55.1
CiPaw.13G054100 Carya illinoinensis HOM05D006940 ORTHO05D008626 2.2e-22 109.0 50 88.0
Glyma.08G345100 Glycine max HOM05D006940 ORTHO05D008626 2.2e-22 109.0 50 88.0
Lalb_Chr21g0315011 Lupinus albus HOM05D006940 ORTHO05D008626 2.2e-22 109.0 101 53.5
CSS0001884 Camellia sinensis var. sinensis HOM05D006940 ORTHO05D008626 2.9e-22 108.6 113 52.2
PGR044G1150 Punica granatum HOM05D006940 ORTHO05D008626 2.9e-22 108.6 63 74.6
Sopen08g020450 Solanum pennellii HOM05D006940 ORTHO05D008626 2.9e-22 108.6 108 52.8
Sopen09g020450 Solanum pennellii HOM05D006940 ORTHO05D008626 2.9e-22 108.6 108 54.6
Nitab4.5_0000038g0040 Nicotiana tabacum HOM05D006940 ORTHO05D008626 3.8e-22 108.2 111 51.4
PGSC0003DMG400007740 Solanum tuberosum HOM05D006940 ORTHO05D008626 3.8e-22 108.2 100 54.0
Migut.D02467 Erythranthe guttata HOM05D006940 ORTHO05D008626 5.0e-22 107.8 50 86.0
Lj1g0019270 Lotus japonicus HOM05D006940 ORTHO05D008626 5.0e-22 107.8 50 86.0
Phvul.008G137700 Phaseolus vulgaris HOM05D006940 ORTHO05D008626 5.0e-22 107.8 98 53.1
Sed0027137 Sechium edule HOM05D006940 ORTHO05D008626 5.0e-22 107.8 117 48.7
Solyc08g066610.3 Solanum lycopersicum HOM05D006940 ORTHO05D008626 5.0e-22 107.8 108 52.8
TPR.G26809 Trifolium pratense HOM05D006940 ORTHO05D008626 5.0e-22 107.8 50 86.0
Medtr7g052120 Medicago truncatula HOM05D006940 ORTHO05D008626 6.5e-22 107.5 49 85.7
Nn7g37664 Nelumbo nucifera HOM05D006940 ORTHO05D008626 6.5e-22 107.5 50 86.0
Aa31sc38G90 Aethionema arabicum HOM05D006940 ORTHO05D008626 8.4e-22 107.1 98 54.1
Phvul.010G031000 Phaseolus vulgaris HOM05D006940 ORTHO05D008626 8.4e-22 107.1 87 52.9
PSO675G0779 Papaver somniferum HOM05D006940 ORTHO05D008626 1.1e-21 106.7 50 82.0
MBI07_g41210_MAGBIO Magnolia biondii HOM05D006940 ORTHO05D008626 1.4e-21 106.3 50 84.0
Os01g0914400 Oryza sativa ssp. japonica HOM05D006940 ORTHO05D008626 1.4e-21 106.3 64 68.8
Rhsim13G0052100 Rhododendron simsii HOM05D006940 ORTHO05D008626 1.4e-21 106.3 103 49.5
CiPaw.14G043100 Carya illinoinensis HOM05D006940 ORTHO05D008626 1.9e-21 105.9 50 84.0
HanXRQChr08g0231211 Helianthus annuus HOM05D006940 ORTHO05D008626 2.5e-21 105.5 104 52.9
PSO017G0530 Papaver somniferum HOM05D006940 ORTHO05D008626 2.5e-21 105.5 110 48.2
TWI75G1309 Tripterygium wilfordii HOM05D006940 ORTHO05D008626 2.5e-21 105.5 50 84.0
MSTRG.20995 Avicennia marina HOM05D006940 ORTHO05D008626 3.2e-21 105.1 58 72.4
COL.COLO4_06154 Corchorus olitorius HOM05D006940 ORTHO05D008626 3.2e-21 105.1 49 85.7
Lalb_Chr03g0041181 Lupinus albus HOM05D006940 ORTHO05D008626 4.2e-21 104.8 104 51.0
TPR.G2024 Trifolium pratense HOM05D006940 ORTHO05D008626 4.2e-21 104.8 48 83.3
MSTRG.18810 Avicennia marina HOM05D006940 ORTHO05D008626 5.5e-21 104.4 60 71.7
VMungo0331G0069 Vigna mungo HOM05D006940 ORTHO05D008626 5.5e-21 104.4 49 83.7
Lsat_1_v5_gn_9_16040 Lactuca sativa HOM05D006940 ORTHO05D008626 7.2e-21 104.0 69 68.1
Oeu064661.1 Olea europaea HOM05D006940 ORTHO05D008626 9.3e-21 103.6 48 83.3
EL10Ac5g11605 Beta vulgaris HOM05D006940 ORTHO05D008626 2.1e-20 102.4 50 76.0
GSVIVG01031691001 Vitis vinifera HOM05D006940 ORTHO05D008626 2.1e-20 102.4 47 85.1
Zm00001eb143570 Zea mays HOM05D006940 ORTHO05D008626 2.1e-20 102.4 50 82.0
Zm00001eb364920 Zea mays HOM05D006940 ORTHO05D008626 2.1e-20 102.4 50 82.0
THA.LOC104818992 Tarenaya hassleriana HOM05D006940 ORTHO05D008626 2.7e-20 102.1 99 48.5
TAR636G0441 Trochodendron aralioides HOM05D006940 ORTHO05D008626 3.5e-20 101.7 79 55.7
Sc01g0005680 Simmondsia chinensis HOM05D006940 ORTHO05D008626 6.1e-20 100.9 66 63.6
Lsat_1_v5_gn_8_97920 Lactuca sativa HOM05D006940 ORTHO05D008626 1.8e-19 99.4 50 78.0
arahy.Tifrunner.gnm1.ann1.7YS827 Arachis hypogaea HOM05D006940 ORTHO05D008626 3.0e-19 98.6 45 88.9
Psat0s4060g0200 Pisum sativum HOM05D006940 ORTHO05D008626 6.7e-19 97.4 49 77.6
HanXRQChr16g0507861 Helianthus annuus HOM05D006940 ORTHO05D008626 1.1e-18 96.7 72 61.1
ATR0609G114 Amborella trichopoda HOM05D006940 ORTHO05D008626 2.5e-18 95.5 57 70.2
MSTRG.12756 Avicennia marina HOM05D006940 ORTHO05D008626 4.3e-18 94.7 52 71.2
SEGI_36325 Sequoiadendron giganteum HOM05D006940 ORTHO05D008626 7.4e-18 94.0 95 48.4
HPP92_011792 Vanilla planifolia HOM05D006940 ORTHO05D008626 2.2e-17 92.4 112 42.0
AUR62042875 Chenopodium quinoa HOM05D006940 ORTHO05D008626 2.8e-17 92.0 57 61.4
Zm00001eb174960 Zea mays HOM05D006940 ORTHO05D008626 3.1e-16 88.6 51 64.7
PGSC0003DMG400020111 Solanum tuberosum HOM05D006940 ORTHO05D008626 6.9e-16 87.4 49 75.5
SMO351G0191 Selaginella moellendorffii HOM05D006940 ORTHO05D008626 1.7e-14 82.8 56 58.9


User provided reference genes

Program Settings