Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G1003 Cannabis sativa HOM05D005197 ORTHO05D006263 1.8e-143 512.7 274 100.0
ClCG07G011270 Citrullus lanatus HOM05D005197 ORTHO05D006263 8.4e-53 211.5 278 50.0
MELO3C016247.2 Cucumis melo HOM05D005197 ORTHO05D006263 1.1e-52 211.1 288 49.3
CsaV3_4G006970 Cucumis sativus L. HOM05D005197 ORTHO05D006263 5.4e-52 208.8 288 49.0
RcHm_v2.0_Chr7g0214771 Rosa chinensis HOM05D005197 ORTHO05D006263 1.9e-49 200.3 293 48.5
Haze_08011 Corylus avellana HOM05D005197 ORTHO05D006263 3.3e-49 199.5 301 47.8
TWI32G0688 Tripterygium wilfordii HOM05D005197 ORTHO05D006263 9.6e-49 198.0 313 47.9
Cfa012647 Carpinus fangiana HOM05D005197 ORTHO05D006263 2.1e-48 196.8 301 47.5
MD16G1288300 Malus domestica HOM05D005197 ORTHO05D006263 3.6e-48 196.1 293 49.8
Prupe.5G017000 Prunus persica HOM05D005197 ORTHO05D006263 2.4e-47 193.4 296 47.6
TWI60G1368 Tripterygium wilfordii HOM05D005197 ORTHO05D006263 6.4e-45 185.3 319 44.5
Atru.chr6.2120 Acer truncatum HOM05D005197 ORTHO05D006263 1.1e-44 184.5 280 46.1
CiPaw.10G109500 Carya illinoinensis HOM05D005197 ORTHO05D006263 1.4e-44 184.1 313 44.7
Manes.17G005300 Manihot esculenta HOM05D005197 ORTHO05D006263 9.3e-44 181.4 289 45.0
PGR042G3936 Punica granatum HOM05D005197 ORTHO05D006263 9.3e-44 181.4 309 46.6
Eucgr.E01174 Eucalyptus grandis HOM05D005197 ORTHO05D006263 6.0e-43 178.7 298 43.0
Sed0006364 Sechium edule HOM05D005197 ORTHO05D006263 6.0e-43 178.7 322 39.4
arahy.Tifrunner.gnm1.ann1.11I9TD Arachis hypogaea HOM05D005197 ORTHO05D006263 1.0e-42 177.9 287 46.0
arahy.Tifrunner.gnm1.ann1.CK7EWS Arachis hypogaea HOM05D005197 ORTHO05D006263 1.0e-42 177.9 287 46.0
TAR629G2553 Trochodendron aralioides HOM05D005197 ORTHO05D006263 1.0e-42 177.9 281 44.1
Lj2g0023539 Lotus japonicus HOM05D005197 ORTHO05D006263 1.1e-41 174.5 283 44.9
Ah.12g056120 Amaranthus hybridus HOM05D005197 ORTHO05D006263 1.5e-41 174.1 282 42.2
VMungo1215G2329 Vigna mungo HOM05D005197 ORTHO05D006263 3.3e-41 172.9 272 45.2
Phvul.002G124900 Phaseolus vulgaris HOM05D005197 ORTHO05D006263 1.6e-40 170.6 275 46.5
Cpa.g.sc305.1 Carica papaya HOM05D005197 ORTHO05D006263 1.1e-39 167.9 288 43.8
Cc00_g01150 Coffea canephora HOM05D005197 ORTHO05D006263 5.3e-39 165.6 293 41.3
Lalb_Chr16g0380581 Lupinus albus HOM05D005197 ORTHO05D006263 1.5e-38 164.1 271 43.2
FAN04G2949 Fragaria x ananassa HOM05D005197 ORTHO05D006263 2.6e-38 163.3 295 44.4
Potri.001G128600 Populus trichocarpa HOM05D005197 ORTHO05D006263 3.4e-38 162.9 321 40.5
Oeu057151.1 Olea europaea HOM05D005197 ORTHO05D006263 7.6e-38 161.8 283 45.6
QL12p002187 Quercus lobata HOM05D005197 ORTHO05D006263 6.4e-37 158.7 285 43.2
Sopen07g029250 Solanum pennellii HOM05D005197 ORTHO05D006263 8.4e-37 158.3 282 44.3
Thecc.03G323400 Theobroma cacao HOM05D005197 ORTHO05D006263 8.4e-37 158.3 274 42.3
Ciclev10002053m.g Citrus clementina HOM05D005197 ORTHO05D006263 1.9e-36 157.1 291 41.6
Nitab4.5_0004181g0010 Nicotiana tabacum HOM05D005197 ORTHO05D006263 3.2e-36 156.4 299 41.5
DCAR_030955 Daucus carota HOM05D005197 ORTHO05D006263 1.6e-35 154.1 274 43.8
FAN13G2818 Fragaria x ananassa HOM05D005197 ORTHO05D006263 7.9e-35 151.8 295 41.0
vmacro19764 Vaccinium macrocarpon HOM05D005197 ORTHO05D006263 1.0e-34 151.4 290 41.0
MSTRG.13922 Avicennia marina HOM05D005197 ORTHO05D006263 1.8e-34 150.6 275 42.9
Nitab4.5_0000183g0040 Nicotiana tabacum HOM05D005197 ORTHO05D006263 3.0e-34 149.8 292 40.4
FAN08G2611 Fragaria x ananassa HOM05D005197 ORTHO05D006263 3.9e-34 149.4 296 41.6
Rhsim05G0122600 Rhododendron simsii HOM05D005197 ORTHO05D006263 8.7e-34 148.3 281 42.3
SalBow8G0134 Salvia bowleyana HOM05D005197 ORTHO05D006263 2.5e-33 146.7 283 40.6
CAN.G22.3 Capsicum annuum HOM05D005197 ORTHO05D006263 9.6e-33 144.8 279 41.2
Peaxi162Scf00445g00001 Petunia axillaris HOM05D005197 ORTHO05D006263 1.3e-32 144.4 275 40.4
FvH4_5g24380 Fragaria vesca HOM05D005197 ORTHO05D006263 2.8e-32 143.3 287 39.7
Sabra01G0098900 Salix brachista HOM05D005197 ORTHO05D006263 3.7e-32 142.9 323 38.1
Actinidia25714 Actinidia chinensis HOM05D005197 ORTHO05D006263 4.8e-32 142.5 302 38.4
FAN18G1897 Fragaria x ananassa HOM05D005197 ORTHO05D006263 1.8e-31 140.6 285 39.6
Psat2g143520 Pisum sativum HOM05D005197 ORTHO05D006263 1.8e-31 140.6 285 41.4
TPR.G17269 Trifolium pratense HOM05D005197 ORTHO05D006263 3.1e-31 139.8 271 39.5
Duzib084G1118 Durio zibethinus HOM05D005197 ORTHO05D006263 5.3e-31 139.0 279 40.1
Medtr5g026390 Medicago truncatula HOM05D005197 ORTHO05D006263 3.4e-30 136.3 304 37.8
Nn3g19195 Nelumbo nucifera HOM05D005197 ORTHO05D006263 1.0e-29 134.8 274 37.6
CARHR030980 Cardamine hirsuta HOM05D005197 ORTHO05D006263 2.2e-29 133.7 312 38.8
Thhalv10008233m.g Eutrema salsugineum HOM05D005197 ORTHO05D006263 2.2e-29 133.7 316 37.7
Nn1g09229 Nelumbo nucifera HOM05D005197 ORTHO05D006263 2.2e-29 133.7 280 39.3
SGA_v2.0_scaffold121G33048 Striga asiatica HOM05D005197 ORTHO05D006263 2.2e-29 133.7 279 40.9
AT1G31460 Arabidopsis thaliana HOM05D005197 ORTHO05D006263 2.9e-29 133.3 305 39.0
PGSC0003DMG400041236 Solanum tuberosum HOM05D005197 ORTHO05D006263 1.1e-28 131.3 256 43.0
COL.COLO4_16714 Corchorus olitorius HOM05D005197 ORTHO05D006263 4.2e-28 129.4 270 39.6
Aa31LG2G14490 Aethionema arabicum HOM05D005197 ORTHO05D006263 7.1e-28 128.6 314 36.0
Migut.E01390 Erythranthe guttata HOM05D005197 ORTHO05D006263 2.1e-27 127.1 286 40.9
Sp1g27260 Schrenkiella parvula HOM05D005197 ORTHO05D006263 2.7e-27 126.7 306 36.3
EL10Ac5g11882 Beta vulgaris HOM05D005197 ORTHO05D006263 3.0e-26 123.2 268 36.6
Ca_25075_v3 Cicer arietinum L. HOM05D005197 ORTHO05D006263 3.0e-26 123.2 319 35.1
AL1G49590 Arabidopsis lyrata HOM05D005197 ORTHO05D006263 5.1e-26 122.5 307 37.1
Glyma.01G150900 Glycine max HOM05D005197 ORTHO05D006263 5.1e-26 122.5 277 39.4
A09p34750 Brassica napus HOM05D000153 ORTHO05D002648 1.1e-25 121.3 285 37.2
ECA233G2979 Erigeron canadensis HOM05D005197 ORTHO05D006263 1.3e-24 117.9 293 39.6
BcaB07g32805 Brassica carinata HOM05D005197 ORTHO05D006263 1.6e-24 117.5 283 38.2
Sc22g0002200 Simmondsia chinensis HOM05D005197 ORTHO05D006263 2.2e-24 117.1 299 35.5
ECA232G2780 Erigeron canadensis HOM05D005197 ORTHO05D006263 2.8e-24 116.7 286 37.8
Carub.0001s2988 Capsella rubella HOM05D005197 ORTHO05D006263 3.7e-24 116.3 317 35.0
THA.LOC104814380 Tarenaya hassleriana HOM05D005197 ORTHO05D006263 3.7e-24 116.3 330 34.2
PSO782G4627 Papaver somniferum HOM05D005197 ORTHO05D006263 4.8e-24 115.9 279 37.3
BcaC05g27174 Brassica carinata HOM05D005197 ORTHO05D006263 6.9e-23 112.1 302 36.4
BolC5t31804H Brassica oleracea HOM05D000153 ORTHO05D002648 6.9e-23 112.1 302 36.4
Lsat_1_v5_gn_6_15401 Lactuca sativa HOM05D005197 ORTHO05D006263 9.0e-23 111.7 281 38.4
C05p30720 Brassica napus HOM05D000153 ORTHO05D002648 1.2e-22 111.3 303 36.3
BraA09t39008Z Brassica rapa HOM05D000153 ORTHO05D002648 3.4e-22 109.8 282 35.8
Lj8A379T44 Lonicera japonica HOM05D005197 ORTHO05D006263 4.5e-22 109.4 292 36.3
SalBow8G0427 Salvia bowleyana HOM05D005197 ORTHO05D006263 4.5e-22 109.4 282 36.5
ATR0369G001 Amborella trichopoda HOM05D005197 ORTHO05D006263 1.0e-21 108.2 290 37.6
AUR62027297 Chenopodium quinoa HOM05D005197 ORTHO05D006263 4.6e-19 99.4 239 36.4
PSO063G5355 Papaver somniferum HOM05D005197 ORTHO05D006263 1.3e-16 91.3 269 33.8
unitig_748.g8157 Utricularia gibba HOM05D000246 ORTHO05D007958 1.7e-16 90.9 266 33.5
Dinv09432 Davidia involucrata HOM05D005197 ORTHO05D002665 2.8e-16 90.1 148 43.9
Glyma.09G215900 Glycine max HOM05D005197 ORTHO05D006263 1.1e-15 88.2 262 35.5
AUR62022385 Chenopodium quinoa HOM05D005197 ORTHO05D006263 1.8e-15 87.4 226 33.6
Aa31LG9G15880 Aethionema arabicum HOM05D005197 ORTHO05D006263 3.1e-15 86.7 268 33.2
Thhalv10009724m.g Eutrema salsugineum HOM05D005197 ORTHO05D006263 4.5e-14 82.8 190 37.4
TPR.G23178 Trifolium pratense HOM05D005197 ORTHO05D006263 5.9e-14 82.4 186 37.1
Aqoxy3G01755 Aquilegia oxysepala HOM05D005197 ORTHO05D006263 1.3e-13 81.3 274 33.6
TAR636G3359 Trochodendron aralioides HOM05D005197 ORTHO05D006263 1.3e-13 81.3 96 46.9
HanXRQChr17g0539691 Helianthus annuus HOM05D005197 ORTHO05D006263 8.5e-13 78.6 365 29.0
HPP92_022730 Vanilla planifolia HOM05D005197 ORTHO05D006263 8.5e-13 78.6 266 27.8
BcaB07g32316 Brassica carinata HOM05D005197 ORTHO05D006263 1.1e-12 78.2 59 64.4
CDE11G1044 Ceratophyllum demersum HOM05D005197 ORTHO05D006263 1.4e-12 77.8 274 33.6
Solyc07g055880.1 Solanum lycopersicum HOM05D005197 ORTHO05D006263 2.5e-12 77.0 63 69.8
BcaC05g26236 Brassica carinata HOM05D005197 ORTHO05D006263 1.0e-10 71.6 59 59.3
C05p22480 Brassica napus HOM05D005197 ORTHO05D006263 1.0e-10 71.6 59 59.3
BolC5t30946H Brassica oleracea HOM05D005197 ORTHO05D006263 1.0e-10 71.6 59 59.3
VMungo0464G0602 Vigna mungo HOM05D005197 ORTHO05D006263 1.4e-10 71.2 192 33.9
A09p41500 Brassica napus HOM05D005197 ORTHO05D006263 3.9e-10 69.7 59 57.6
BraA09t39642Z Brassica rapa HOM05D005197 ORTHO05D006263 3.9e-10 69.7 59 57.6
MBI04_g30782_MAGBIO Magnolia biondii HOM05D005197 ORTHO05D006263 3.9e-10 69.7 63 55.6
QL12p002196 Quercus lobata HOM05D005197 ORTHO05D006263 6.7e-10 68.9 90 47.8
Nn3g19194 Nelumbo nucifera HOM05D005197 ORTHO05D006263 2.6e-09 67.0 92 41.3
Glyma.09G216000 Glycine max HOM05D005197 ORTHO05D006263 3.3e-09 66.6 92 43.5
CARHR023710 Cardamine hirsuta HOM05D005197 ORTHO05D006263 4.4e-09 66.2 156 36.5
Actinidia25715 Actinidia chinensis HOM05D005197 ORTHO05D006263 7.4e-09 65.5 68 50.0
Lalb_Chr05g0215321 Lupinus albus HOM05D005197 ORTHO05D006263 7.4e-09 65.5 88 43.2
SalBow2G3639 Salvia bowleyana HOM05D002402 ORTHO05D002633 7.4e-09 65.5 68 51.5
Psat2g143800 Pisum sativum HOM05D005197 ORTHO05D006263 1.3e-08 64.7 90 41.1
Carub.0001s2285 Capsella rubella HOM05D005197 ORTHO05D006263 1.7e-08 64.3 62 51.6
CiPaw.11G075300 Carya illinoinensis HOM05D005197 ORTHO05D006263 1.7e-08 64.3 94 40.4
Haze_08012 Corylus avellana HOM05D005197 ORTHO05D006263 3.7e-08 63.2 98 39.8
Glyma.01G151000 Glycine max HOM05D005197 ORTHO05D006263 3.7e-08 63.2 94 41.5
SEGI_24603 Sequoiadendron giganteum HOM05D005197 ORTHO05D006263 4.8e-08 62.8 269 31.2
Cfa012646 Carpinus fangiana HOM05D005197 ORTHO05D006263 6.3e-08 62.4 96 43.8
SalBow6G3245 Salvia bowleyana HOM05D005197 ORTHO05D006263 6.3e-08 62.4 70 51.4
Haze_08014 Corylus avellana HOM05D005197 ORTHO05D006263 8.2e-08 62.0 98 38.8
Lj2g0019897 Lotus japonicus HOM05D005197 ORTHO05D006263 1.1e-07 61.6 81 40.7
Phvul.002G124800 Phaseolus vulgaris HOM05D005197 ORTHO05D006263 1.4e-07 61.2 84 42.9
TPR.G36193 Trifolium pratense HOM05D005197 ORTHO05D006263 2.4e-07 60.5 80 41.2
VMungo1215G1205 Vigna mungo HOM05D005197 ORTHO05D006263 3.1e-07 60.1 81 40.7
Carub.0001s2286 Capsella rubella HOM05D005197 ORTHO05D006263 6.9e-07 58.9 122 36.9
AT1G23270 Arabidopsis thaliana HOM05D005197 ORTHO05D006263 9.1e-07 58.5 155 34.8
SalBow2G1093 Salvia bowleyana HOM05D005197 ORTHO05D006263 1.2e-06 58.2 52 57.7
Medtr5g026380 Medicago truncatula HOM05D005197 ORTHO05D006263 2.6e-06 57.0 90 38.9
Hma1.2p1_0317F.1_g123280 Hydrangea macrophylla HOM05D005197 ORTHO05D006263 3.4e-06 56.6 47 68.1
SalBow6G4547 Salvia bowleyana HOM05D005197 ORTHO05D006263 3.4e-06 56.6 52 55.8
SalBow7G0563 Salvia bowleyana HOM05D005197 ORTHO05D006263 3.4e-06 56.6 52 55.8
TPR.G17242 Trifolium pratense HOM05D005197 ORTHO05D006263 3.4e-06 56.6 85 41.2
TPR.G902 Trifolium pratense HOM05D005197 ORTHO05D006263 5.9e-06 55.8 81 42.0
Eucgr.L01782 Eucalyptus grandis HOM05D005197 ORTHO05D006263 7.7e-06 55.5 116 37.9


User provided reference genes

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