Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G0924 Cannabis sativa HOM05D003474 ORTHO05D003971 3.2e-113 411.8 205 100.0
CANSAT01G1468 Cannabis sativa HOM05D003474 ORTHO05D003971 8.9e-108 393.7 205 95.6
QL06p049618 Quercus lobata HOM05D003474 ORTHO05D003971 2.5e-41 172.9 210 47.1
QL06p049587 Quercus lobata HOM05D003474 ORTHO05D003971 1.2e-40 170.6 210 47.6
QL06p049593 Quercus lobata HOM05D003474 ORTHO05D003971 1.2e-40 170.6 210 48.6
QL06p049633 Quercus lobata HOM05D003474 ORTHO05D003971 3.0e-39 166.0 210 45.7
Prupe.6G186100 Prunus persica HOM05D003474 ORTHO05D003971 6.7e-39 164.9 207 45.4
RcHm_v2.0_Chr2g0114471 Rosa chinensis HOM05D003474 ORTHO05D003971 1.5e-38 163.7 214 45.3
Cfa002670 Carpinus fangiana HOM05D003474 ORTHO05D003971 2.6e-38 162.9 212 46.7
RcHm_v2.0_Chr2g0114461 Rosa chinensis HOM05D003474 ORTHO05D003971 3.3e-38 162.5 215 47.0
FvH4_1g20980 Fragaria vesca HOM05D003474 ORTHO05D003971 5.3e-36 155.2 213 46.0
CANSAT73G0001 Cannabis sativa HOM05D003474 ORTHO05D003971 7.0e-36 154.8 226 46.5
FAN28G0803 Fragaria x ananassa HOM05D003474 ORTHO05D003971 1.6e-35 153.7 213 45.5
Oeu002403.1 Olea europaea HOM05D003474 ORTHO05D003971 1.0e-34 151.0 210 40.0
FAN19G2364 Fragaria x ananassa HOM05D003474 ORTHO05D003971 2.2e-34 149.8 213 45.1
FAN23G2065 Fragaria x ananassa HOM05D003474 ORTHO05D003971 2.2e-34 149.8 213 44.1
CiPaw.04G099000 Carya illinoinensis HOM05D003474 ORTHO05D003971 6.5e-34 148.3 215 43.3
Oeu056606.1 Olea europaea HOM05D003474 ORTHO05D003971 6.5e-34 148.3 206 42.2
FAN26G3130 Fragaria x ananassa HOM05D003474 ORTHO05D003971 1.1e-33 147.5 213 45.1
Nn5g30135 Nelumbo nucifera HOM05D003474 ORTHO05D003971 5.5e-33 145.2 215 42.3
TAR381G0511 Trochodendron aralioides HOM05D003474 ORTHO05D003971 5.5e-33 145.2 214 42.5
CSS0044421 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 7.2e-33 144.8 222 40.5
Thecc.01G102400 Theobroma cacao HOM05D003474 ORTHO05D003971 1.2e-32 144.1 217 41.9
CSS0002095 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 2.1e-32 143.3 222 40.1
Potri.007G092300 Populus trichocarpa HOM05D003474 ORTHO05D003971 4.7e-32 142.1 205 42.4
Cc07_g15300 Coffea canephora HOM05D003474 ORTHO05D003971 1.4e-31 140.6 207 43.5
CSS0009549 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 1.8e-31 140.2 222 40.1
Nn1g05334 Nelumbo nucifera HOM05D003474 ORTHO05D003971 1.8e-31 140.2 213 41.8
CiPaw.03G141500 Carya illinoinensis HOM05D003474 ORTHO05D003971 3.0e-31 139.4 219 42.0
CSS0039995 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 4.0e-31 139.0 222 39.2
Sabra07G0075900 Salix brachista HOM05D003474 ORTHO05D003971 8.8e-31 137.9 205 41.5
Sabra07G0076000 Salix brachista HOM05D003474 ORTHO05D003971 8.8e-31 137.9 205 41.5
Cfa002671 Carpinus fangiana HOM05D003474 ORTHO05D003971 1.2e-30 137.5 204 43.1
Sabra07G0076200 Salix brachista HOM05D003474 ORTHO05D003971 1.2e-30 137.5 205 41.5
Sabra07G0076300 Salix brachista HOM05D003474 ORTHO05D003971 1.2e-30 137.5 205 41.5
CSS0038157 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 2.6e-30 136.3 214 44.4
Hma1.2p1_0047F.1_g027910 Hydrangea macrophylla HOM05D003474 ORTHO05D003971 2.6e-30 136.3 215 41.4
COL.COLO4_09957 Corchorus olitorius HOM05D003474 ORTHO05D003971 3.3e-30 136.0 221 40.3
Gorai.007G239100 Gossypium raimondii HOM05D003474 ORTHO05D003971 3.3e-30 136.0 203 44.8
TWI74G0170 Tripterygium wilfordii HOM05D003474 ORTHO05D003971 3.3e-30 136.0 221 40.3
Sabra07G0076100 Salix brachista HOM05D003474 ORTHO05D003971 5.7e-30 135.2 205 41.0
Potri.005G076100 Populus trichocarpa HOM05D003474 ORTHO05D003971 3.7e-29 132.5 209 38.8
Gohir.A11G201900 Gossypium hirsutum HOM05D003474 ORTHO05D003971 4.8e-29 132.1 217 42.4
Gohir.D11G221900 Gossypium hirsutum HOM05D003474 ORTHO05D003971 6.3e-29 131.7 208 42.3
Manes.12G135500 Manihot esculenta HOM05D003474 ORTHO05D003971 1.4e-28 130.6 212 39.2
Lj4P889T19 Lonicera japonica HOM05D003474 ORTHO05D003971 7.0e-28 128.3 201 38.8
CSS0003854 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 1.2e-27 127.5 222 38.7
Peaxi162Scf00611g00012 Petunia axillaris HOM05D003474 ORTHO05D003971 2.7e-27 126.3 203 39.9
PGSC0003DMG400001891 Solanum tuberosum HOM05D003474 ORTHO05D003971 2.7e-27 126.3 207 38.6
TAR625G0209 Trochodendron aralioides HOM05D003474 ORTHO05D003971 4.5e-27 125.6 184 40.8
Ciclev10027277m.g Citrus clementina HOM05D003474 ORTHO05D003971 7.7e-27 124.8 213 39.9
AUR62003788 Chenopodium quinoa HOM05D003474 ORTHO05D003971 1.0e-26 124.4 194 39.2
Duzib187G1721 Durio zibethinus HOM05D003474 ORTHO05D003971 1.0e-26 124.4 217 36.9
Duzib147G1557 Durio zibethinus HOM05D003474 ORTHO05D003971 1.3e-26 124.0 186 39.2
AUR62002014 Chenopodium quinoa HOM05D003474 ORTHO05D003971 1.7e-26 123.6 194 38.1
CAN.G441.1 Capsicum annuum HOM05D003474 ORTHO05D003971 5.0e-26 122.1 206 35.9
Ca_16531_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 1.5e-25 120.6 204 39.2
Lj6g0005521 Lotus japonicus HOM05D003474 ORTHO05D003971 2.5e-25 119.8 202 37.6
Cpa.g.sc213.15 Carica papaya HOM05D003474 ORTHO05D003971 3.2e-25 119.4 206 39.8
Lalb_Chr23g0277351 Lupinus albus HOM05D003474 ORTHO05D003971 3.2e-25 119.4 214 37.9
Atru.chr4.70 Acer truncatum HOM05D003474 ORTHO05D003971 4.2e-25 119.0 237 35.9
Lj6g0012852 Lotus japonicus HOM05D003474 ORTHO05D003971 5.5e-25 118.6 203 37.4
TAR625G1533 Trochodendron aralioides HOM05D003474 ORTHO05D003971 5.5e-25 118.6 212 39.6
Lj6g0019645 Lotus japonicus HOM05D003474 ORTHO05D003971 9.4e-25 117.9 202 36.6
VMungo1383G0909 Vigna mungo HOM05D003474 ORTHO05D003971 2.1e-24 116.7 210 38.6
EL10Ac6g15097 Beta vulgaris HOM05D003474 ORTHO05D003971 3.6e-24 115.9 189 37.0
Ca_16533_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 3.6e-24 115.9 204 37.3
Aqoxy6G00810 Aquilegia oxysepala HOM05D003474 ORTHO05D003971 6.1e-24 115.2 211 38.9
MBI02_g08731_MAGBIO Magnolia biondii HOM05D003474 ORTHO05D003971 8.0e-24 114.8 204 37.7
Sed0016843 Sechium edule HOM05D003474 ORTHO05D003971 1.0e-23 114.4 211 38.4
Atru.chr4.72 Acer truncatum HOM05D003474 ORTHO05D003971 1.4e-23 114.0 239 34.7
Atru.chr4.73 Acer truncatum HOM05D003474 ORTHO05D003971 1.4e-23 114.0 239 34.7
Ah.02g122460 Amaranthus hybridus HOM05D003474 ORTHO05D003971 1.8e-23 113.6 154 41.6
Ca_16530_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 1.8e-23 113.6 204 38.2
Ca_16532_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 3.0e-23 112.8 204 37.7
Dinv13182 Davidia involucrata HOM05D003474 ORTHO05D003971 3.0e-23 112.8 137 45.3
ClCG01G018800 Citrullus lanatus HOM05D003474 ORTHO05D003971 5.2e-23 112.1 207 35.7
TPR.G17848 Trifolium pratense HOM05D003474 ORTHO05D003971 5.2e-23 112.1 206 35.4
Eucgr.I00429 Eucalyptus grandis HOM05D003474 ORTHO05D003971 1.2e-22 110.9 219 36.1
Eucgr.I00430 Eucalyptus grandis HOM05D003474 ORTHO05D003971 1.2e-22 110.9 219 36.1
Aqoxy6G00809 Aquilegia oxysepala HOM05D003474 ORTHO05D003971 1.5e-22 110.5 175 38.3
CsaV3_6G045460 Cucumis sativus L. HOM05D003474 ORTHO05D003971 1.5e-22 110.5 211 36.0
PGSC0003DMG400021798 Solanum tuberosum HOM05D003474 ORTHO05D003971 1.5e-22 110.5 206 38.8
Medtr3g087275 Medicago truncatula HOM05D003474 ORTHO05D003971 2.0e-22 110.2 201 34.8
Psat5g089920 Pisum sativum HOM05D003474 ORTHO05D003971 2.0e-22 110.2 206 36.4
SalBow3G2422 Salvia bowleyana HOM05D003474 ORTHO05D003971 2.0e-22 110.2 201 36.3
SalBow5G3228 Salvia bowleyana HOM05D003474 ORTHO05D003971 2.6e-22 109.8 201 37.8
Haze_24940 Corylus avellana HOM05D003474 ORTHO05D003971 5.7e-22 108.6 136 44.1
Nitab4.5_0000104g0120 Nicotiana tabacum HOM05D003474 ORTHO05D003971 5.7e-22 108.6 184 35.9
Nitab4.5_0016805g0010 Nicotiana tabacum HOM05D003474 ORTHO05D003971 7.5e-22 108.2 181 36.5
PSO781G0183 Papaver somniferum HOM05D003474 ORTHO05D003971 7.5e-22 108.2 180 36.7
Lsat_1_v5_gn_5_43140 Lactuca sativa HOM05D003474 ORTHO05D003971 9.8e-22 107.8 171 34.5
Lsat_1_v5_gn_5_43240 Lactuca sativa HOM05D003474 ORTHO05D003971 9.8e-22 107.8 171 34.5
Nitab4.5_0000104g0070 Nicotiana tabacum HOM05D003474 ORTHO05D003971 9.8e-22 107.8 185 36.2
TPR.G17834 Trifolium pratense HOM05D003474 ORTHO05D003971 9.8e-22 107.8 206 35.0
PGR004G1795 Punica granatum HOM05D003474 ORTHO05D003971 2.2e-21 106.7 211 33.2
QL06p049605 Quercus lobata HOM05D003474 ORTHO05D003971 2.2e-21 106.7 109 52.3
Sc16g0005640 Simmondsia chinensis HOM05D003474 ORTHO05D003971 2.2e-21 106.7 208 39.4
TPR.G17847 Trifolium pratense HOM05D003474 ORTHO05D003971 2.2e-21 106.7 207 35.3
Solyc03g078620.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 2.8e-21 106.3 206 38.3
PSO781G0184 Papaver somniferum HOM05D003474 ORTHO05D003971 4.8e-21 105.5 205 34.6
SalBow5G4466 Salvia bowleyana HOM05D003474 ORTHO05D003971 4.8e-21 105.5 199 37.2
Sopen03g021520 Solanum pennellii HOM05D003474 ORTHO05D003971 4.8e-21 105.5 205 37.6
TPR.G17845 Trifolium pratense HOM05D003474 ORTHO05D003971 4.8e-21 105.5 206 34.0
Lsat_1_v5_gn_5_43320 Lactuca sativa HOM05D003474 ORTHO05D003971 6.3e-21 105.1 171 33.3
ECA246G4897 Erigeron canadensis HOM05D003474 ORTHO05D003971 8.3e-21 104.8 171 35.7
Migut.L00118 Erythranthe guttata HOM05D003474 ORTHO05D003971 8.3e-21 104.8 177 36.2
SalBow5G0419 Salvia bowleyana HOM05D003474 ORTHO05D003971 8.3e-21 104.8 199 37.2
BcaB08g37131 Brassica carinata HOM05D003474 ORTHO05D003971 1.1e-20 104.4 181 38.7
Lsat_1_v5_gn_5_43280 Lactuca sativa HOM05D003474 ORTHO05D003971 1.4e-20 104.0 171 33.3
Glyma.18G017500 Glycine max HOM05D003474 ORTHO05D003971 1.8e-20 103.6 206 35.9
BcaC04g19322 Brassica carinata HOM05D003474 ORTHO05D003971 4.1e-20 102.4 182 35.7
C09p67210 Brassica napus HOM05D003474 ORTHO05D003971 4.1e-20 102.4 182 35.7
Lsat_1_v5_gn_5_43380 Lactuca sativa HOM05D003474 ORTHO05D003971 4.1e-20 102.4 147 38.1
Lalb_Chr08g0231071 Lupinus albus HOM05D003474 ORTHO05D003971 4.1e-20 102.4 220 32.7
PSO541G6092 Papaver somniferum HOM05D003474 ORTHO05D003971 5.4e-20 102.1 205 33.2
Psat5g089720 Pisum sativum HOM05D003474 ORTHO05D003971 5.4e-20 102.1 207 36.2
Thhalv10014734m.g Eutrema salsugineum HOM05D003474 ORTHO05D003971 7.0e-20 101.7 191 37.2
Medtr3g087325 Medicago truncatula HOM05D003474 ORTHO05D003971 7.0e-20 101.7 207 33.8
Psat5g089840 Pisum sativum HOM05D003474 ORTHO05D003971 7.0e-20 101.7 207 35.3
PSO781G0304 Papaver somniferum HOM05D003474 ORTHO05D003971 9.1e-20 101.3 208 33.7
AL8G42540 Arabidopsis lyrata HOM05D003474 ORTHO05D003971 1.2e-19 100.9 203 34.5
Medtr3g087280 Medicago truncatula HOM05D003474 ORTHO05D003971 1.2e-19 100.9 206 33.5
A10p27350 Brassica napus HOM05D003474 ORTHO05D003971 1.6e-19 100.5 211 34.6
Psat5g089880 Pisum sativum HOM05D003474 ORTHO05D003971 1.6e-19 100.5 209 36.8
PSO781G0331 Papaver somniferum HOM05D003474 ORTHO05D003971 2.0e-19 100.1 205 33.2
CARHR293740 Cardamine hirsuta HOM05D003474 ORTHO05D003971 3.5e-19 99.4 209 34.0
THA.LOC104804926 Tarenaya hassleriana HOM05D003474 ORTHO05D003971 3.5e-19 99.4 189 36.0
AL6G20700 Arabidopsis lyrata HOM05D003474 ORTHO05D003971 4.5e-19 99.0 191 36.1
ClCG01G018790 Citrullus lanatus HOM05D003474 ORTHO05D003971 5.9e-19 98.6 205 35.6
Sp2g28110 Schrenkiella parvula HOM05D003474 ORTHO05D003971 5.9e-19 98.6 207 34.8
Psat5g089800 Pisum sativum HOM05D003474 ORTHO05D003971 7.7e-19 98.2 211 33.6
Medtr3g087278 Medicago truncatula HOM05D003474 ORTHO05D003971 1.0e-18 97.8 208 34.6
BolC9t59492H Brassica oleracea HOM05D003474 ORTHO05D003971 1.7e-18 97.1 174 36.2
BraA06t26118Z Brassica rapa HOM05D003474 ORTHO05D003971 1.7e-18 97.1 204 33.8
BraA10t44786Z Brassica rapa HOM05D003474 ORTHO05D003971 2.3e-18 96.7 182 35.2
CARHR203080 Cardamine hirsuta HOM05D003474 ORTHO05D003971 2.9e-18 96.3 215 33.5
Medtr3g087330 Medicago truncatula HOM05D003474 ORTHO05D003971 2.9e-18 96.3 207 35.3
TPR.G17829 Trifolium pratense HOM05D003474 ORTHO05D003971 3.8e-18 95.9 206 33.5
AT5G10210 Arabidopsis thaliana HOM05D003474 ORTHO05D003971 8.6e-18 94.7 211 33.6
Glyma.11G239900 Glycine max HOM05D003474 ORTHO05D003971 8.6e-18 94.7 209 34.4
Medtr3g087270 Medicago truncatula HOM05D003474 ORTHO05D003971 1.1e-17 94.4 210 33.3
AT5G65030 Arabidopsis thaliana HOM05D003474 ORTHO05D003971 1.5e-17 94.0 203 32.5
Carub.0008s2587 Capsella rubella HOM05D003474 ORTHO05D003971 1.5e-17 94.0 214 31.3
Lsat_1_v5_gn_5_43760 Lactuca sativa HOM05D003474 ORTHO05D003971 1.9e-17 93.6 187 33.7
A06p31850 Brassica napus HOM05D003474 ORTHO05D003971 2.5e-17 93.2 174 33.3
SEGI_20067 Sequoiadendron giganteum HOM05D003474 ORTHO05D003971 2.5e-17 93.2 139 35.3
BcaB02g09856 Brassica carinata HOM05D003474 ORTHO05D003971 3.2e-17 92.8 204 32.4
Sp6g33190 Schrenkiella parvula HOM05D003474 ORTHO05D003971 5.5e-17 92.0 215 34.4
BcaC01g02734 Brassica carinata HOM05D003474 ORTHO05D003971 7.2e-17 91.7 205 31.2
C03p61160 Brassica napus HOM05D003474 ORTHO05D003971 7.2e-17 91.7 205 31.2
BolC3t18376H Brassica oleracea HOM05D003474 ORTHO05D003971 7.2e-17 91.7 205 31.2
Carub.0006s0867 Capsella rubella HOM05D003474 ORTHO05D003971 2.8e-16 89.7 184 34.2
Sabra05G0062700 Salix brachista HOM05D003474 ORTHO05D003971 2.8e-16 89.7 174 36.2
Migut.H02362 Erythranthe guttata HOM05D003474 ORTHO05D003971 3.6e-16 89.4 223 30.9
DCAR_003501 Daucus carota HOM05D003474 ORTHO05D003971 6.1e-16 88.6 191 33.0
Aa31LG3G16930 Aethionema arabicum HOM05D003474 ORTHO05D003971 8.0e-16 88.2 175 38.3
SEGI_16345 Sequoiadendron giganteum HOM05D000003 ORTHO05D000004 1.4e-15 87.4 154 34.4
Rhsim08G0010000 Rhododendron simsii HOM05D003474 ORTHO05D003971 1.8e-15 87.0 180 35.0
TPR.G17835 Trifolium pratense HOM05D003474 ORTHO05D003971 3.0e-15 86.3 207 33.8
SalBow5G1505 Salvia bowleyana HOM05D003474 ORTHO05D003971 4.0e-15 85.9 114 39.5
Phvul.001G251900 Phaseolus vulgaris HOM05D003474 ORTHO05D003971 5.2e-15 85.5 167 32.9
SEGI_10997 Sequoiadendron giganteum HOM05D002590 ORTHO05D002763 6.8e-15 85.1 147 36.1
SEGI_25558 Sequoiadendron giganteum HOM05D002590 ORTHO05D002763 6.8e-15 85.1 147 36.1
Actinidia28867 Actinidia chinensis HOM05D003474 ORTHO05D003971 1.3e-13 80.9 155 38.1
Sabra07G0076400 Salix brachista HOM05D003474 ORTHO05D003971 4.9e-13 79.0 178 32.0
SalBow5G5729 Salvia bowleyana HOM05D003474 ORTHO05D003971 6.3e-13 78.6 167 34.7
PGSC0003DMG400001890 Solanum tuberosum HOM05D003474 ORTHO05D003971 5.4e-12 75.5 134 37.3
Solyc04g055140.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 1.6e-11 73.9 134 35.8
Peaxi162Scf00212g00111 Petunia axillaris HOM05D003474 ORTHO05D003971 2.7e-11 73.2 89 41.6
Medtr3g087300 Medicago truncatula HOM05D003474 ORTHO05D003971 1.1e-09 67.8 194 29.9
SalBow5G3492 Salvia bowleyana HOM05D003474 ORTHO05D003971 1.1e-09 67.8 147 37.4
Solyc04g055150.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 1.5e-09 67.4 135 34.8
Peaxi162Scf00212g00105 Petunia axillaris HOM05D003474 ORTHO05D003971 5.6e-09 65.5 128 35.2
TPR.G17838 Trifolium pratense HOM05D003474 ORTHO05D003971 1.2e-08 64.3 85 41.2
Nitab4.5_0006517g0020 Nicotiana tabacum HOM05D003474 ORTHO05D003971 2.1e-08 63.5 131 30.5
Os04g0455700 Oryza sativa ssp. japonica HOM05D032805 ORTHO05D037220 4.4e-06 55.8 170 27.6
Zm00001eb081100 Zea mays HOM05D032805 ORTHO05D037220 5.7e-06 55.5 144 27.8


User provided reference genes

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