Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G0911 Cannabis sativa HOM05D005188 ORTHO05D006153 7.7e-89 330.5 170 100.0
Cfa002897 Carpinus fangiana HOM05D005188 ORTHO05D006153 9.1e-74 280.4 176 84.1
Haze_25240 Corylus avellana HOM05D005188 ORTHO05D006153 1.6e-73 279.6 176 83.5
CiPaw.03G121400 Carya illinoinensis HOM05D005188 ORTHO05D006153 3.8e-72 275.0 176 83.5
Potri.005G063300 Populus trichocarpa HOM05D005188 ORTHO05D006153 1.9e-71 272.7 175 82.9
Cpa.g.sc3.345 Carica papaya HOM05D005188 ORTHO05D006153 3.2e-71 271.9 173 81.5
Sabra05G0052500 Salix brachista HOM05D005188 ORTHO05D006153 4.2e-71 271.6 175 82.9
Potri.007G105900 Populus trichocarpa HOM05D005188 ORTHO05D006153 5.5e-71 271.2 175 84.0
Thecc.01G132900 Theobroma cacao HOM05D005188 ORTHO05D006153 2.1e-70 269.2 176 83.0
ClCG01G015380 Citrullus lanatus HOM05D005188 ORTHO05D006153 3.6e-70 268.5 173 80.9
CsaV3_6G041600 Cucumis sativus L. HOM05D005188 ORTHO05D006153 4.7e-70 268.1 173 80.9
Gohir.D11G230800 Gossypium hirsutum HOM05D005188 ORTHO05D006153 6.1e-70 267.7 177 83.1
Lj1g0024625 Lotus japonicus HOM05D005188 ORTHO05D006153 6.1e-70 267.7 170 81.2
MELO3C008060.2 Cucumis melo HOM05D005188 ORTHO05D006153 8.0e-70 267.3 173 80.3
Lalb_Chr13g0296451 Lupinus albus HOM05D005188 ORTHO05D006153 1.0e-69 266.9 176 79.5
Gohir.A11G226800 Gossypium hirsutum HOM05D005188 ORTHO05D006153 1.4e-69 266.5 177 82.5
CiPaw.04G081900 Carya illinoinensis HOM05D005188 ORTHO05D006153 1.8e-69 266.2 177 81.4
COL.COLO4_35748 Corchorus olitorius HOM05D005188 ORTHO05D006153 3.0e-69 265.4 175 83.4
QL02p001672 Quercus lobata HOM05D005188 ORTHO05D006153 6.8e-69 264.2 175 81.1
Ciclev10002687m.g Citrus clementina HOM05D005188 ORTHO05D006153 1.2e-68 263.5 172 82.0
Gohir.A05G384500 Gossypium hirsutum HOM05D005188 ORTHO05D006153 2.0e-68 262.7 175 81.7
Gorai.003G066700 Gossypium raimondii HOM05D005188 ORTHO05D006153 7.5e-68 260.8 184 79.9
Gorai.012G035200 Gossypium raimondii HOM05D005188 ORTHO05D006153 7.5e-68 260.8 175 80.6
Medtr3g095540 Medicago truncatula HOM05D005188 ORTHO05D006153 1.3e-67 260.0 176 79.0
Cc10_g12590 Coffea canephora HOM05D005188 ORTHO05D006153 2.8e-67 258.8 172 78.5
VMungo0251G2948 Vigna mungo HOM05D005188 ORTHO05D006153 2.8e-67 258.8 172 76.7
TPR.G18740 Trifolium pratense HOM05D005188 ORTHO05D006153 6.3e-67 257.7 176 79.0
Phvul.002G269400 Phaseolus vulgaris HOM05D005188 ORTHO05D006153 1.1e-66 256.9 173 76.9
TWI75G0084 Tripterygium wilfordii HOM05D005188 ORTHO05D006153 7.0e-66 254.2 170 79.4
Manes.12G156000 Manihot esculenta HOM05D005188 ORTHO05D006153 1.2e-65 253.4 175 77.7
Ca_16917_v3 Cicer arietinum L. HOM05D005188 ORTHO05D006153 1.6e-65 253.1 173 77.5
Prupe.4G271200 Prunus persica HOM05D005188 ORTHO05D006153 2.7e-65 252.3 174 79.9
TAR381G0300 Trochodendron aralioides HOM05D005188 ORTHO05D006153 3.5e-65 251.9 176 77.8
Sabra07G0086700 Salix brachista HOM05D005188 ORTHO05D006153 5.9e-65 251.1 172 77.3
Migut.H00702 Erythranthe guttata HOM05D005188 ORTHO05D006153 1.3e-64 250.0 170 74.7
TWI79G1553 Tripterygium wilfordii HOM05D005188 ORTHO05D006153 1.7e-64 249.6 170 77.1
Dinv24366 Davidia involucrata HOM05D005188 ORTHO05D006153 3.8e-64 248.4 173 76.9
PGR008G0006 Punica granatum HOM05D005188 ORTHO05D006153 5.0e-64 248.1 170 77.6
PGR119G0239 Punica granatum HOM05D005188 ORTHO05D006153 5.0e-64 248.1 170 77.6
Psat5g063680 Pisum sativum HOM05D005188 ORTHO05D006153 6.5e-64 247.7 171 76.0
Glyma.04G215800 Glycine max HOM05D005188 ORTHO05D006153 3.2e-63 245.4 171 74.9
Glyma.06G150300 Glycine max HOM05D005188 ORTHO05D006153 4.2e-63 245.0 170 73.5
Aqoxy5G02315 Aquilegia oxysepala HOM05D005188 ORTHO05D006153 7.2e-63 244.2 174 75.9
Aa31LG1G17870 Aethionema arabicum HOM05D005188 ORTHO05D006153 9.5e-63 243.8 174 74.1
CARHR277950 Cardamine hirsuta HOM05D005188 ORTHO05D006153 2.1e-62 242.7 173 74.0
Hma1.2p1_0476F.1_g160790 Hydrangea macrophylla HOM05D005188 ORTHO05D006153 2.1e-62 242.7 173 75.7
MD15G1441800 Malus domestica HOM05D005188 ORTHO05D006153 2.1e-62 242.7 173 75.1
CAN.G792.16 Capsicum annuum HOM05D005188 ORTHO05D006153 2.7e-62 242.3 171 77.2
MBI06_g39404_MAGBIO Magnolia biondii HOM05D005188 ORTHO05D006153 2.7e-62 242.3 174 75.3
Oeu037826.1 Olea europaea HOM05D005188 ORTHO05D006153 3.6e-62 241.9 170 74.7
AL8G41300 Arabidopsis lyrata HOM05D005188 ORTHO05D006153 6.1e-62 241.1 174 73.6
Nn2g12180 Nelumbo nucifera HOM05D005188 ORTHO05D006153 8.0e-62 240.7 175 74.3
AT5G64040 Arabidopsis thaliana HOM05D005188 ORTHO05D006153 1.0e-61 240.4 174 73.0
Carub.0008s2482 Capsella rubella HOM05D005188 ORTHO05D006153 3.0e-61 238.8 174 72.4
CDE08G0648 Ceratophyllum demersum HOM05D005188 ORTHO05D006153 3.0e-61 238.8 174 72.4
SalBow1G2748 Salvia bowleyana HOM05D005188 ORTHO05D006153 3.0e-61 238.8 170 75.9
Sp2g27110 Schrenkiella parvula HOM05D005188 ORTHO05D006153 3.0e-61 238.8 173 73.4
BcaB02g09793 Brassica carinata HOM05D005188 ORTHO05D006153 4.0e-61 238.4 173 72.8
MSTRG.2649 Avicennia marina HOM05D005188 ORTHO05D006153 5.2e-61 238.0 169 73.4
BcaC01g02658 Brassica carinata HOM05D005188 ORTHO05D006153 6.8e-61 237.7 173 72.8
BcaC01g02659 Brassica carinata HOM05D005188 ORTHO05D006153 6.8e-61 237.7 173 72.8
Sopen08g004510 Solanum pennellii HOM05D005188 ORTHO05D006153 8.8e-61 237.3 172 77.3
PGSC0003DMG400005805 Solanum tuberosum HOM05D005188 ORTHO05D006153 1.2e-60 236.9 177 74.6
MD01G1004300 Malus domestica HOM05D005188 ORTHO05D006153 2.0e-60 236.1 172 73.3
Sed0019160 Sechium edule HOM05D005188 ORTHO05D006153 2.0e-60 236.1 175 72.6
Thhalv10005005m.g Eutrema salsugineum HOM05D005188 ORTHO05D006153 2.6e-60 235.7 173 72.3
Lj4g0001203 Lotus japonicus HOM05D005188 ORTHO05D006153 2.6e-60 235.7 174 74.1
Solyc08g013670.3 Solanum lycopersicum HOM05D005188 ORTHO05D006153 2.6e-60 235.7 173 76.3
A06p30750 Brassica napus HOM05D005188 ORTHO05D006153 3.4e-60 235.3 173 72.8
Nitab4.5_0000673g0170 Nicotiana tabacum HOM05D005188 ORTHO05D006153 4.4e-60 235.0 173 75.7
Hund23270 Selenicereus undatus HOM05D005188 ORTHO05D006153 4.4e-60 235.0 178 72.5
SGA_v2.0_scaffold370G50114 Striga asiatica HOM05D005188 ORTHO05D006153 9.8e-60 233.8 170 74.7
Actinidia06616 Actinidia chinensis HOM05D005188 ORTHO05D006153 1.7e-59 233.0 175 74.3
Lj2A607T35 Lonicera japonica HOM05D005188 ORTHO05D006153 1.7e-59 233.0 174 73.0
Ah.02g121530 Amaranthus hybridus HOM05D005188 ORTHO05D006153 2.8e-59 232.3 170 70.6
BcaB07g29717 Brassica carinata HOM05D005188 ORTHO05D006153 2.8e-59 232.3 173 72.8
Sed0010246 Sechium edule HOM05D005188 ORTHO05D006153 2.8e-59 232.3 172 73.3
Peaxi162Scf01257g00019 Petunia axillaris HOM05D005188 ORTHO05D006153 3.7e-59 231.9 181 70.7
CDE02G4401 Ceratophyllum demersum HOM05D005188 ORTHO05D006153 6.3e-59 231.1 174 70.7
C09p09640 Brassica napus HOM05D005188 ORTHO05D006153 1.4e-58 229.9 173 72.3
CSS0010064 Camellia sinensis var. sinensis HOM05D005188 ORTHO05D006153 1.4e-58 229.9 180 72.8
CSS0045275 Camellia sinensis var. sinensis HOM05D005188 ORTHO05D006153 1.4e-58 229.9 180 72.8
unitig_899.g14682 Utricularia gibba HOM05D005188 ORTHO05D006153 1.8e-58 229.6 170 71.2
C02p63110 Brassica napus HOM05D005188 ORTHO05D006153 2.4e-58 229.2 173 72.3
BolC2t12383H Brassica oleracea HOM05D005188 ORTHO05D006153 2.4e-58 229.2 173 72.3
arahy.Tifrunner.gnm1.ann1.DJM1RY Arachis hypogaea HOM05D005188 ORTHO05D006153 3.1e-58 228.8 177 73.4
AUR62017881 Chenopodium quinoa HOM05D005188 ORTHO05D006153 3.1e-58 228.8 174 72.4
BcaC03g18240 Brassica carinata HOM05D005188 ORTHO05D006153 4.1e-58 228.4 173 72.3
arahy.Tifrunner.gnm1.ann1.V5WWJ8 Arachis hypogaea HOM05D005188 ORTHO05D006153 7.0e-58 227.6 177 72.9
MBI03_g42548_MAGBIO Magnolia biondii HOM05D005188 ORTHO05D006153 9.2e-58 227.3 173 71.1
DCAR_001211 Daucus carota HOM05D005188 ORTHO05D006153 5.9e-57 224.6 172 70.9
BolC9t53875H Brassica oleracea HOM05D005188 ORTHO05D006153 1.0e-56 223.8 184 68.5
FvH4_1g24360 Fragaria vesca HOM05D005188 ORTHO05D006153 1.3e-56 223.4 172 72.1
FAN19G1208 Fragaria x ananassa HOM05D005188 ORTHO05D006153 1.3e-56 223.4 172 72.1
ATR0987G005 Amborella trichopoda HOM05D005188 ORTHO05D006153 6.6e-56 221.1 179 68.7
MBI06_g27435_MAGBIO Magnolia biondii HOM05D005188 ORTHO05D006153 6.6e-56 221.1 145 80.0
FAN28G1395 Fragaria x ananassa HOM05D002517 ORTHO05D003040 1.9e-55 219.5 170 71.2
HanXRQChr04g0107551 Helianthus annuus HOM05D005188 ORTHO05D006153 4.3e-55 218.4 172 70.9
Atru.chr4.905 Acer truncatum HOM05D005188 ORTHO05D006153 1.2e-54 216.9 171 70.2
ECA247G1960 Erigeron canadensis HOM05D005188 ORTHO05D006153 1.6e-54 216.5 170 68.8
RcHm_v2.0_Chr2g0120891 Rosa chinensis HOM05D005188 ORTHO05D006153 1.6e-54 216.5 172 69.8
Lsat_1_v5_gn_1_10061 Lactuca sativa HOM05D005188 ORTHO05D006153 2.8e-54 215.7 174 67.2
HPP92_019391 Vanilla planifolia HOM05D005188 ORTHO05D006153 8.0e-54 214.2 171 65.5
FAN26G2437 Fragaria x ananassa HOM05D002517 ORTHO05D006153 1.0e-53 213.8 172 70.9
THA.LOC104800083 Tarenaya hassleriana HOM05D005188 ORTHO05D006153 1.0e-53 213.8 174 67.2
PSO541G2775 Papaver somniferum HOM05D005188 ORTHO05D006153 1.8e-53 213.0 170 65.9
GSVIVG01026478001 Vitis vinifera HOM05D005188 ORTHO05D006153 1.8e-53 213.0 170 67.1
BolC3t18491H Brassica oleracea HOM05D005188 ORTHO05D006153 6.8e-53 211.1 177 66.7
Rhsim10G0133700 Rhododendron simsii HOM05D005188 ORTHO05D006153 1.5e-52 209.9 179 68.2
PSO675G9377 Papaver somniferum HOM05D005188 ORTHO05D006153 3.4e-52 208.8 170 64.7
vmacro12795 Vaccinium macrocarpon HOM05D005188 ORTHO05D006153 9.8e-52 207.2 178 66.3
EL10Ac6g15302 Beta vulgaris HOM05D005188 ORTHO05D006153 5.4e-50 201.4 129 79.1
Eucgr.I00200 Eucalyptus grandis HOM05D005188 ORTHO05D006153 3.5e-49 198.7 145 75.2
Duzib264G0557 Durio zibethinus HOM05D005188 ORTHO05D006153 5.9e-49 198.0 147 78.2
A09p08510 Brassica napus HOM05D005188 ORTHO05D006153 5.0e-48 194.9 173 64.7
BraA09t36500Z Brassica rapa HOM05D005188 ORTHO05D006153 5.0e-48 194.9 173 64.7
Oeu050119.1 Olea europaea HOM05D005188 ORTHO05D006153 2.1e-46 189.5 170 60.6
Duzib147G0711 Durio zibethinus HOM05D005188 ORTHO05D006153 3.6e-46 188.7 147 75.5
Os12g0189400 Oryza sativa ssp. japonica HOM05D005188 ORTHO05D006153 2.0e-44 183.0 120 77.5
Zm00001eb409220 Zea mays HOM05D005188 ORTHO05D006153 4.4e-44 181.8 133 69.9
Zm00001eb138650 Zea mays HOM05D005188 ORTHO05D006153 9.8e-44 180.6 170 61.2
C03p62290 Brassica napus HOM05D005188 ORTHO05D006153 1.6e-41 173.3 143 68.5
BraA06t26017Z Brassica rapa HOM05D005188 ORTHO05D006153 7.8e-41 171.0 143 68.5
SEGI_16120 Sequoiadendron giganteum HOM05D005188 ORTHO05D006153 1.8e-37 159.8 128 64.1
Sc16g0003820 Simmondsia chinensis HOM05D005188 ORTHO05D006153 1.5e-36 156.8 142 64.8
Duzib187G0538 Durio zibethinus HOM05D005188 ORTHO05D006153 4.9e-35 151.8 130 71.5
SMO144G0055 Selaginella moellendorffii HOM05D005188 ORTHO05D006153 2.1e-33 146.4 82 80.5
BcaB04g17222 Brassica carinata HOM05D005188 ORTHO05D006153 4.7e-30 135.2 122 59.8
BcaB08g36594 Brassica carinata HOM05D005188 ORTHO05D006153 4.7e-30 135.2 74 86.5
BolC2t07163H Brassica oleracea HOM05D005188 ORTHO05D006153 1.4e-29 133.7 74 85.1
BolC7t41311H Brassica oleracea HOM05D005188 ORTHO05D006153 1.4e-29 133.7 72 87.5
BcaC04g18786 Brassica carinata HOM05D005188 ORTHO05D006153 5.2e-29 131.7 74 83.8
AUR62003566 Chenopodium quinoa HOM05D005188 ORTHO05D006153 8.4e-27 124.4 171 49.7
Mapoly0116s0042 Marchantia polymorpha HOM05D005188 ORTHO05D006153 6.0e-25 118.2 105 55.2
Cre02.g082500 Chlamydomonas reinhardtii HOM05D005188 ORTHO05D006153 1.4e-21 107.1 125 51.2
BcaC03g13890 Brassica carinata HOM05D005188 ORTHO05D006153 1.2e-20 104.0 74 68.9
Nitab4.5_0005544g0070 Nicotiana tabacum HOM05D005188 ORTHO05D006153 3.4e-20 102.4 109 61.5
Nn5g28540 Nelumbo nucifera HOM05D005188 ORTHO05D006153 5.8e-20 101.7 104 62.5
AagrBONN_evm.TU.Sc2ySwM_362.2803 Anthoceros agrestis HOM05D005188 ORTHO05D006153 1.3e-19 100.5 94 59.6
BraA02t09233Z Brassica rapa HOM05D005188 ORTHO05D006153 3.8e-19 99.0 116 59.5
Gohir.D04G031000 Gossypium hirsutum HOM05D006465 ORTHO05D008207 9.3e-18 94.4 110 61.8
MCO09G058 Micromonas commoda HOM05D005188 ORTHO05D006153 6.6e-16 88.2 146 40.4
PRCOL_00004565 Prasinoderma coloniale HOM05D005188 ORTHO05D006153 6.6e-16 88.2 82 58.5
A02p43130 Brassica napus HOM05D005188 ORTHO05D006153 1.9e-15 86.7 101 58.4
CBR_g45633 Chara braunii HOM05D005188 ORTHO05D006153 3.3e-15 85.9 97 51.5
C02p10930 Brassica napus HOM05D005188 ORTHO05D006153 1.0e-08 64.3 30 90.0


User provided reference genes

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