Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G0875 Cannabis sativa HOM05D005527 ORTHO05D006480 4.5e-169 597.8 298 100.0
CANSAT01G3075 Cannabis sativa HOM05D005527 ORTHO05D006480 2.2e-168 595.5 298 99.7
Prupe.8G211200 Prunus persica HOM05D005527 ORTHO05D006480 4.3e-103 378.6 297 63.3
CANSAT01G1020 Cannabis sativa HOM05D001299 ORTHO05D001985 3.1e-101 372.5 202 93.6
MD10G1173000 Malus domestica HOM05D005527 ORTHO05D006480 6.9e-101 371.3 297 62.6
MD05G1185000 Malus domestica HOM05D005527 ORTHO05D006480 5.1e-96 355.1 300 60.7
RcHm_v2.0_Chr6g0285911 Rosa chinensis HOM05D005527 ORTHO05D006480 2.6e-92 342.8 298 57.4
Potri.014G054400 Populus trichocarpa HOM05D005527 ORTHO05D006480 3.7e-86 322.4 240 66.7
FvH4_7g06430 Fragaria vesca HOM05D005527 ORTHO05D006480 1.8e-85 320.1 297 54.9
Sabra14G0040300 Salix brachista HOM05D005527 ORTHO05D006480 6.9e-85 318.2 245 65.7
FAN01G2831 Fragaria x ananassa HOM05D005527 ORTHO05D006480 4.5e-84 315.5 297 54.9
Dinv43641 Davidia involucrata HOM05D005527 ORTHO05D006480 5.9e-84 315.1 250 64.4
Actinidia40393 Actinidia chinensis HOM05D005527 ORTHO05D006480 1.4e-82 310.5 254 64.2
CiPaw.03G272900 Carya illinoinensis HOM05D005527 ORTHO05D006480 1.4e-82 310.5 312 54.5
Actinidia12159 Actinidia chinensis HOM05D005527 ORTHO05D006480 2.5e-82 309.7 253 64.0
vmacro21047 Vaccinium macrocarpon HOM05D005527 ORTHO05D006480 2.5e-82 309.7 236 65.7
vmacro13481 Vaccinium macrocarpon HOM05D005527 ORTHO05D006480 3.2e-82 309.3 252 62.7
GSVIVG01022807001 Vitis vinifera HOM05D005527 ORTHO05D006480 3.2e-82 309.3 253 63.6
Atru.chr10.1194 Acer truncatum HOM05D005527 ORTHO05D006480 2.7e-81 306.2 264 61.7
Rhsim07G0034300 Rhododendron simsii HOM05D005527 ORTHO05D006480 7.9e-81 304.7 204 72.5
Cpa.g.sc5.224 Carica papaya HOM05D005527 ORTHO05D006480 2.3e-80 303.1 201 73.6
Hma1.2p1_1740F.1_g300050 Hydrangea macrophylla HOM05D005527 ORTHO05D006480 3.0e-80 302.8 238 63.4
Ciclev10021461m.g Citrus clementina HOM05D005527 ORTHO05D006480 3.9e-80 302.4 206 74.3
Thecc.01G389600 Theobroma cacao HOM05D005527 ORTHO05D006480 6.7e-80 301.6 249 61.4
Cfa016649 Carpinus fangiana HOM05D002184 ORTHO05D006480 8.7e-80 301.2 264 59.5
QL09p042955 Quercus lobata HOM05D005527 ORTHO05D006480 3.3e-79 299.3 234 64.1
Potri.002G140700 Populus trichocarpa HOM05D005527 ORTHO05D006480 5.7e-79 298.5 199 72.9
TWI59G1399 Tripterygium wilfordii HOM05D005527 ORTHO05D006480 5.7e-79 298.5 255 60.0
Lju41A43T28 Lonicera japonica HOM05D005527 ORTHO05D006480 7.4e-79 298.1 204 70.6
CDE11G0157 Ceratophyllum demersum HOM05D005527 ORTHO05D006480 9.7e-79 297.7 232 65.9
Manes.05G052500 Manihot esculenta HOM05D005527 ORTHO05D006480 9.7e-79 297.7 215 70.2
Oeu063991.1 Olea europaea HOM05D005527 ORTHO05D006480 9.7e-79 297.7 209 69.4
Nitab4.5_0001818g0050 Nicotiana tabacum HOM05D005527 ORTHO05D006480 2.8e-78 296.2 220 66.4
BolC9t52939H Brassica oleracea HOM05D005527 ORTHO05D006480 6.3e-78 295.0 202 71.3
Eucgr.D01510 Eucalyptus grandis HOM05D005527 ORTHO05D006480 6.3e-78 295.0 193 73.1
Nn6g33862 Nelumbo nucifera HOM05D005527 ORTHO05D006480 8.2e-78 294.7 188 76.1
Solyc08g081430.3 Solanum lycopersicum HOM05D005527 ORTHO05D006480 1.1e-77 294.3 220 65.9
Ca_09921_v3 Cicer arietinum L. HOM05D005527 ORTHO05D006480 1.8e-77 293.5 192 75.0
Sopen08g029750 Solanum pennellii HOM05D005527 ORTHO05D006480 1.8e-77 293.5 231 63.6
MELO3C019920.2 Cucumis melo HOM05D005527 ORTHO05D006480 2.4e-77 293.1 185 75.7
CsaV3_6G004490 Cucumis sativus L. HOM05D005527 ORTHO05D006480 2.4e-77 293.1 185 75.7
arahy.Tifrunner.gnm1.ann1.TVCQ13 Arachis hypogaea HOM05D005527 ORTHO05D006480 3.1e-77 292.7 193 72.5
Duzib138G0956 Durio zibethinus HOM05D005527 ORTHO05D006480 4.1e-77 292.4 247 59.9
PGSC0003DMG401012327 Solanum tuberosum HOM05D005527 ORTHO05D006480 4.1e-77 292.4 201 70.6
Gohir.A08G059500 Gossypium hirsutum HOM05D005527 ORTHO05D006480 5.3e-77 292.0 278 54.7
Nitab4.5_0002874g0100 Nicotiana tabacum HOM05D005527 ORTHO05D006480 5.3e-77 292.0 218 66.1
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 6.9e-77 291.6 279 54.1
THA.LOC104814072 Tarenaya hassleriana HOM05D005527 ORTHO05D006480 6.9e-77 291.6 202 68.8
Thhalv10028875m.g Eutrema salsugineum HOM05D005527 ORTHO05D006480 9.0e-77 291.2 199 69.3
Peaxi162Scf00392g00124 Petunia axillaris HOM05D005527 ORTHO05D006480 9.0e-77 291.2 201 69.7
FAN03G2170 Fragaria x ananassa HOM05D005527 ORTHO05D006480 1.2e-76 290.8 333 48.6
Lalb_Chr21g0311731 Lupinus albus HOM05D005527 ORTHO05D006480 1.2e-76 290.8 203 70.4
TAR375G0575 Trochodendron aralioides HOM05D005527 ORTHO05D006480 1.2e-76 290.8 204 70.6
CAN.G532.17 Capsicum annuum HOM05D005527 ORTHO05D006480 1.5e-76 290.4 234 61.5
CARHR248050 Cardamine hirsuta HOM05D005527 ORTHO05D006480 1.5e-76 290.4 193 71.0
CSS0037426 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 2.0e-76 290.0 252 59.5
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 2.0e-76 290.0 279 53.8
Gohir.D08G068700 Gossypium hirsutum HOM05D005527 ORTHO05D006480 2.0e-76 290.0 278 54.3
C09p00040 Brassica napus HOM05D005527 ORTHO05D006480 2.6e-76 289.7 262 58.8
BraA09t35678Z Brassica rapa HOM05D005527 ORTHO05D006480 2.6e-76 289.7 262 58.8
Sabra02G0109800 Salix brachista HOM05D005527 ORTHO05D006480 2.6e-76 289.7 236 63.6
Sed0026275 Sechium edule HOM05D005527 ORTHO05D006480 2.6e-76 289.7 232 62.9
AT4G00026 Arabidopsis thaliana HOM05D005527 ORTHO05D006480 4.5e-76 288.9 193 71.0
BcaB01g02205 Brassica carinata HOM05D005527 ORTHO05D006480 7.7e-76 288.1 202 69.8
AL6G53490 Arabidopsis lyrata HOM05D005527 ORTHO05D006480 1.0e-75 287.7 193 70.5
Carub.0006s3720 Capsella rubella HOM05D005527 ORTHO05D006480 1.0e-75 287.7 199 69.8
Duzib133G0823 Durio zibethinus HOM05D005527 ORTHO05D006480 1.0e-75 287.7 198 69.7
Lsat_1_v5_gn_3_129561 Lactuca sativa HOM05D005527 ORTHO05D006480 1.0e-75 287.7 185 72.4
SGA_v2.0_scaffold116G32305 Striga asiatica HOM05D005527 ORTHO05D006480 1.0e-75 287.7 221 64.3
Phvul.L007001 Phaseolus vulgaris HOM05D005527 ORTHO05D006480 1.3e-75 287.3 189 73.0
MSTRG.4922 Avicennia marina HOM05D005527 ORTHO05D006480 2.2e-75 286.6 264 55.3
Lalb_Chr02g0149681 Lupinus albus HOM05D005527 ORTHO05D006480 2.2e-75 286.6 207 68.1
EL10Ac7g17978 Beta vulgaris HOM05D005527 ORTHO05D006480 2.9e-75 286.2 202 71.3
Migut.N01756 Erythranthe guttata HOM05D005527 ORTHO05D006480 5.0e-75 285.4 221 62.9
Gorai.004G072000 Gossypium raimondii HOM05D005527 ORTHO05D006480 5.0e-75 285.4 278 54.0
Ah.08g218760 Amaranthus hybridus HOM05D005527 ORTHO05D006480 1.1e-74 284.3 204 68.6
AUR62022137 Chenopodium quinoa HOM05D005527 ORTHO05D006480 1.1e-74 284.3 202 69.3
Glyma.20G215800 Glycine max HOM05D005527 ORTHO05D006480 1.1e-74 284.3 190 71.6
Psat6g111240 Pisum sativum HOM05D005527 ORTHO05D006480 1.1e-74 284.3 195 72.8
COL.COLO4_12437 Corchorus olitorius HOM05D005527 ORTHO05D006480 1.4e-74 283.9 250 58.0
Medtr1g077430 Medicago truncatula HOM05D005527 ORTHO05D006480 1.4e-74 283.9 197 71.6
PGR004G2692 Punica granatum HOM05D005527 ORTHO05D006480 2.5e-74 283.1 211 65.4
VMungo0720G0088 Vigna mungo HOM05D005527 ORTHO05D006480 3.2e-74 282.7 189 73.5
AUR62001190 Chenopodium quinoa HOM05D005527 ORTHO05D006480 5.5e-74 282.0 202 68.8
Lj5g0022618 Lotus japonicus HOM05D005527 ORTHO05D006480 5.5e-74 282.0 199 71.4
arahy.Tifrunner.gnm1.ann1.PVA962 Arachis hypogaea HOM05D005527 ORTHO05D006480 9.4e-74 281.2 206 67.5
Glyma.10G175000 Glycine max HOM05D005527 ORTHO05D006480 9.4e-74 281.2 188 71.8
DCAR_025077 Daucus carota HOM05D005527 ORTHO05D006480 1.6e-73 280.4 221 62.9
SalBow5G2512 Salvia bowleyana HOM05D005527 ORTHO05D006480 1.4e-72 277.3 192 68.2
TPR.G8872 Trifolium pratense HOM05D005527 ORTHO05D006480 3.0e-72 276.2 195 71.8
SalBow5G5418 Salvia bowleyana HOM05D005527 ORTHO05D006480 5.1e-72 275.4 192 67.7
PSO063G6553 Papaver somniferum HOM05D005527 ORTHO05D006480 6.7e-72 275.0 215 66.0
ECA240G4071 Erigeron canadensis HOM05D005527 ORTHO05D006480 8.8e-72 274.6 198 68.7
Oeu018737.2 Olea europaea HOM05D005527 ORTHO05D006480 2.6e-71 273.1 262 55.7
SGA_v2.0_scaffold44G16622 Striga asiatica HOM05D005527 ORTHO05D006480 4.3e-71 272.3 173 74.6
BcaB01g02184 Brassica carinata HOM05D005527 ORTHO05D006480 2.2e-70 270.0 256 55.9
HPP92_021019 Vanilla planifolia HOM05D005527 ORTHO05D006480 4.8e-70 268.9 205 66.3
C08p29870 Brassica napus HOM05D005527 ORTHO05D006480 1.1e-69 267.7 190 67.9
A09p47660 Brassica napus HOM05D005527 ORTHO05D006480 1.4e-69 267.3 191 68.6
Cc00_g20470 Coffea canephora HOM05D005527 ORTHO05D006480 2.4e-69 266.5 220 62.7
Rhsim01G0137400 Rhododendron simsii HOM05D005527 ORTHO05D006480 3.1e-69 266.2 225 60.4
BraA09t40222Z Brassica rapa HOM05D005527 ORTHO05D006480 4.1e-69 265.8 191 68.6
ClCG08G008500 Citrullus lanatus HOM05D005527 ORTHO05D006480 1.5e-68 263.8 247 57.5
unitig_0.g2761 Utricularia gibba HOM05D005527 ORTHO05D006480 2.6e-68 263.1 207 63.3
Zm00001eb010980 Zea mays HOM05D005527 ORTHO05D006480 5.0e-67 258.8 197 67.0
Aa31LG5G80 Aethionema arabicum HOM05D005527 ORTHO05D006480 1.4e-66 257.3 193 66.3
SHI13602 Sapria himalayana HOM05D005527 ORTHO05D006480 1.4e-66 257.3 223 57.0
Dinv44079 Davidia involucrata HOM05D005527 ORTHO05D006480 2.5e-66 256.5 186 67.7
Sp6g00070 Schrenkiella parvula HOM05D005527 ORTHO05D006480 2.7e-65 253.1 178 68.5
ATR0767G019 Amborella trichopoda HOM05D005527 ORTHO05D006480 4.7e-65 252.3 167 70.1
AagrBONN_evm.TU.Sc2ySwM_117.1379 Anthoceros agrestis HOM05D005527 ORTHO05D006480 1.7e-62 243.8 177 70.1
CANSAT01G1592 Cannabis sativa HOM05D005527 ORTHO05D006480 1.1e-61 241.1 125 95.2
Mapoly0168s0006 Marchantia polymorpha HOM05D005527 ORTHO05D006480 1.1e-61 241.1 188 63.8
SMO201G0136 Selaginella moellendorffii HOM05D005527 ORTHO05D006480 2.6e-60 236.5 160 68.8
Pp3c2_16760 Physcomitrium patens HOM05D005527 ORTHO05D006480 6.5e-59 231.9 239 54.8
Nn1g00907 Nelumbo nucifera HOM05D005527 ORTHO05D006480 1.0e-56 224.6 133 79.7
CBR_g6321 Chara braunii HOM05D005527 ORTHO05D000048 6.3e-54 215.3 179 57.5
BolC8t50598H Brassica oleracea HOM05D005527 ORTHO05D006480 8.2e-54 214.9 154 70.8
Aqoxy3G02804 Aquilegia oxysepala HOM05D000030 ORTHO05D000023 5.3e-53 212.2 197 57.4
HanXRQChr13g0422791 Helianthus annuus HOM05D005527 ORTHO05D006480 2.0e-52 210.3 134 73.9
BcaC07g39791 Brassica carinata HOM05D005527 ORTHO05D006480 3.8e-51 206.1 157 66.9
Hund14311 Selenicereus undatus HOM05D005527 ORTHO05D006480 1.5e-50 204.1 132 74.2
DCAR_025031 Daucus carota HOM05D005527 ORTHO05D006480 2.5e-50 203.4 170 61.2
BcaB02g08455 Brassica carinata HOM05D005527 ORTHO05D006480 1.8e-48 197.2 157 66.2
CSS0049638 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 1.4e-45 187.6 108 79.6
SEGI_20492 Sequoiadendron giganteum HOM05D005527 ORTHO05D006480 5.0e-43 179.1 116 72.4
FAN23G2762 Fragaria x ananassa HOM05D005527 ORTHO05D006480 1.3e-38 164.5 234 42.3
Oeu018739.1 Olea europaea HOM05D005527 ORTHO05D006480 1.7e-38 164.1 92 82.6
FAN19G1210 Fragaria x ananassa HOM05D005527 ORTHO05D006480 2.9e-35 153.3 228 43.4
Haze_19655 Corylus avellana HOM05D002184 ORTHO05D002379 1.3e-30 137.9 93 67.7
A09p00830 Brassica napus HOM05D005527 ORTHO05D006480 9.2e-29 131.7 175 47.4
MCO09G641 Micromonas commoda HOM05D005527 ORTHO05D006480 1.3e-27 127.9 133 48.1
Cre09.g405550 Chlamydomonas reinhardtii HOM05D005527 ORTHO05D006480 1.7e-27 127.5 149 42.3
CSS0016661 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 4.3e-26 122.9 112 57.1
CSS0044998 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 4.3e-26 122.9 112 57.1
PRCOL_00001529 Prasinoderma coloniale HOM05D005527 ORTHO05D006480 9.5e-26 121.7 137 45.3
FAN28G0427 Fragaria x ananassa HOM05D005527 ORTHO05D006480 1.4e-24 117.9 243 36.6
Sc14g0006170 Simmondsia chinensis HOM05D005527 ORTHO05D006480 4.4e-23 112.8 78 71.8
Os03g0253800 Oryza sativa ssp. japonica HOM05D005527 ORTHO05D006480 9.2e-21 105.1 79 67.1
ECA240G0336 Erigeron canadensis HOM05D002424 ORTHO05D002640 2.9e-14 83.6 112 48.2
Glyma.06G247300 Glycine max HOM05D006695 ORTHO05D008239 7.8e-12 75.5 41 78.0
Glyma.08G276700 Glycine max HOM05D005527 ORTHO05D006480 1.2e-09 68.2 38 78.9
FAN23G0109 Fragaria x ananassa HOM05D005527 ORTHO05D006480 5.2e-08 62.8 98 41.8
FvH4_1g24250 Fragaria vesca HOM05D017060 ORTHO05D046490 2.0e-07 60.8 110 43.6
HanXRQChr11g0351331 Helianthus annuus HOM05D005527 ORTHO05D006480 1.7e-06 57.8 41 68.3


User provided reference genes

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