Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G0851 Cannabis sativa HOM05D004267 ORTHO05D005267 4.9e-96 354.4 167 100.0
CANSAT01G1320 Cannabis sativa HOM05D004267 ORTHO05D005267 4.9e-96 354.4 167 100.0
QL02p001694 Quercus lobata HOM05D004267 ORTHO05D005267 5.6e-76 287.7 166 78.9
Lj5g0002830 Lotus japonicus HOM05D004267 ORTHO05D005267 2.1e-75 285.8 167 74.9
Glyma.14G092300 Glycine max HOM05D004267 ORTHO05D005267 2.4e-74 282.3 167 74.9
Ca_13187_v3 Cicer arietinum L. HOM05D004267 ORTHO05D005267 6.9e-74 280.8 167 74.9
Lalb_Chr14g0367901 Lupinus albus HOM05D004267 ORTHO05D005267 6.9e-74 280.8 167 74.9
Glyma.17G231200 Glycine max HOM05D004267 ORTHO05D005267 9.0e-74 280.4 167 74.9
Psat6g019000 Pisum sativum HOM05D004267 ORTHO05D005267 2.6e-73 278.9 167 73.1
CiPaw.15G042300 Carya illinoinensis HOM05D004267 ORTHO05D005267 3.4e-73 278.5 167 76.6
VMungo0647G2384 Vigna mungo HOM05D004267 ORTHO05D005267 4.4e-73 278.1 167 73.7
Phvul.001G033101 Phaseolus vulgaris HOM05D004267 ORTHO05D005267 7.6e-73 277.3 167 73.7
ClCG08G016900 Citrullus lanatus HOM05D004267 ORTHO05D005267 2.9e-72 275.4 167 74.3
Cfa017926 Carpinus fangiana HOM05D004267 ORTHO05D005267 3.8e-72 275.0 167 76.0
TPR.G12986 Trifolium pratense HOM05D004267 ORTHO05D005267 3.8e-72 275.0 167 72.5
Haze_18224 Corylus avellana HOM05D004267 ORTHO05D005267 8.4e-72 273.9 167 75.4
Sed0007787 Sechium edule HOM05D004267 ORTHO05D005267 3.2e-71 271.9 167 73.1
Eucgr.C00632 Eucalyptus grandis HOM05D004267 ORTHO05D005267 7.1e-71 270.8 167 73.1
SGA_v2.0_scaffold88G27217 Striga asiatica HOM05D004267 ORTHO05D005267 7.1e-71 270.8 167 73.1
Thecc.09G050400 Theobroma cacao HOM05D004267 ORTHO05D005267 9.3e-71 270.4 167 71.3
TAR636G0904 Trochodendron aralioides HOM05D004267 ORTHO05D005267 1.6e-70 269.6 167 73.7
SalBow4G2144 Salvia bowleyana HOM05D004267 ORTHO05D005267 3.5e-70 268.5 167 70.7
MSTRG.1674 Avicennia marina HOM05D004267 ORTHO05D005267 4.6e-70 268.1 167 71.3
CSS0026627 Camellia sinensis var. sinensis HOM05D004267 ORTHO05D005267 6.0e-70 267.7 167 71.9
CSS0030161 Camellia sinensis var. sinensis HOM05D004267 ORTHO05D000002 6.0e-70 267.7 167 71.9
RcHm_v2.0_Chr6g0310421 Rosa chinensis HOM05D004267 ORTHO05D005267 7.8e-70 267.3 166 73.5
Medtr1g016900 Medicago truncatula HOM05D004267 ORTHO05D005267 1.0e-69 266.9 167 70.7
Oeu036354.1 Olea europaea HOM05D004267 ORTHO05D005267 1.0e-69 266.9 167 72.5
CsaV3_2G025720 Cucumis sativus L. HOM05D004267 ORTHO05D005267 1.7e-69 266.2 167 70.1
GSVIVG01035339001 Vitis vinifera HOM05D004267 ORTHO05D005267 1.7e-69 266.2 167 72.5
Nitab4.5_0021628g0010 Nicotiana tabacum HOM05D004267 ORTHO05D005267 2.3e-69 265.8 167 72.5
Solyc11g070050.2 Solanum lycopersicum HOM05D004267 ORTHO05D005267 2.3e-69 265.8 167 73.7
Sopen11g028730 Solanum pennellii HOM05D004267 ORTHO05D005267 2.3e-69 265.8 167 73.7
Duzib168G1102 Durio zibethinus HOM05D004267 ORTHO05D005267 3.0e-69 265.4 167 71.9
Gohir.A06G090500 Gossypium hirsutum HOM05D004267 ORTHO05D005267 3.0e-69 265.4 167 71.3
Gohir.D06G089500 Gossypium hirsutum HOM05D004267 ORTHO05D005267 3.0e-69 265.4 167 71.3
Gorai.010G103400 Gossypium raimondii HOM05D004267 ORTHO05D005267 3.0e-69 265.4 167 71.3
Duzib187G0506 Durio zibethinus HOM05D004267 ORTHO05D005267 5.1e-69 264.6 167 71.3
PGSC0003DMG400025516 Solanum tuberosum HOM05D004267 ORTHO05D005267 6.6e-69 264.2 167 73.1
Peaxi162Scf00247g00612 Petunia axillaris HOM05D004267 ORTHO05D005267 1.1e-68 263.5 167 71.9
Prupe.1G415500 Prunus persica HOM05D004267 ORTHO05D005267 1.1e-68 263.5 164 71.3
Hma1.2p1_1213F.1_g267510 Hydrangea macrophylla HOM05D004267 ORTHO05D005267 2.5e-68 262.3 167 69.5
PGR031G1882 Punica granatum HOM05D004267 ORTHO05D005267 4.3e-68 261.5 167 69.5
arahy.Tifrunner.gnm1.ann1.35PLQF Arachis hypogaea HOM05D004267 ORTHO05D005267 9.6e-68 260.4 166 67.5
FAN20G1958 Fragaria x ananassa HOM05D004267 ORTHO05D005267 1.6e-67 259.6 166 71.7
FAN24G1314 Fragaria x ananassa HOM05D004267 ORTHO05D005267 2.1e-67 259.2 166 71.7
FvH4_2g32280 Fragaria vesca HOM05D004267 ORTHO05D005267 2.8e-67 258.8 166 71.7
Actinidia14699 Actinidia chinensis HOM05D004267 ORTHO05D005267 8.1e-67 257.3 164 69.5
Manes.03G046100 Manihot esculenta HOM05D004267 ORTHO05D005267 1.1e-66 256.9 167 68.9
TWI34G0953 Tripterygium wilfordii HOM05D004267 ORTHO05D005267 1.4e-66 256.5 167 69.5
Nn8g38967 Nelumbo nucifera HOM05D004267 ORTHO05D005267 1.8e-66 256.1 167 69.5
Potri.006G233500 Populus trichocarpa HOM05D004267 ORTHO05D005267 1.8e-66 256.1 167 68.3
Atru.chr7.2026 Acer truncatum HOM05D004267 ORTHO05D005267 3.1e-66 255.4 167 67.7
Ciclev10009729m.g Citrus clementina HOM05D004267 ORTHO05D005267 5.3e-66 254.6 166 69.3
Rhsim07G0144100 Rhododendron simsii HOM05D004267 ORTHO05D005267 5.3e-66 254.6 167 67.7
unitig_578.g16576 Utricularia gibba HOM05D004267 ORTHO05D005267 5.3e-66 254.6 164 69.5
BolC1t00557H Brassica oleracea HOM05D004267 ORTHO05D005267 1.2e-65 253.4 168 69.0
BraA01t00509Z Brassica rapa HOM05D004267 ORTHO05D005267 1.2e-65 253.4 168 69.0
C01p05770 Brassica napus HOM05D004267 ORTHO05D005267 2.0e-65 252.7 168 69.0
A03p61690 Brassica napus HOM05D004267 ORTHO05D005267 2.6e-65 252.3 168 69.0
C07p59420 Brassica napus HOM05D004267 ORTHO05D005267 2.6e-65 252.3 168 69.0
A01p05350 Brassica napus HOM05D004267 ORTHO05D005267 3.4e-65 251.9 168 68.5
THA.LOC104803799 Tarenaya hassleriana HOM05D004267 ORTHO05D005267 3.4e-65 251.9 167 67.1
ATR0789G016 Amborella trichopoda HOM05D004267 ORTHO05D005267 4.5e-65 251.5 167 68.9
Migut.A00159 Erythranthe guttata HOM05D004267 ORTHO05D005267 9.9e-65 250.4 167 67.1
FAN15G3631 Fragaria x ananassa HOM05D004267 ORTHO05D005267 1.3e-64 250.0 179 67.6
HanXRQChr17g0539351 Helianthus annuus HOM05D004267 ORTHO05D005267 1.3e-64 250.0 165 69.7
Aa31sc248G70 Aethionema arabicum HOM05D004267 ORTHO05D005267 1.7e-64 249.6 168 68.5
BcaC09g52093 Brassica carinata HOM05D004267 ORTHO05D005267 1.7e-64 249.6 168 68.5
Thhalv10025837m.g Eutrema salsugineum HOM05D004267 ORTHO05D005267 2.2e-64 249.2 168 69.0
CAN.G309.57 Capsicum annuum HOM05D004267 ORTHO05D005267 4.9e-64 248.1 168 69.6
Gohir.A05G044300 Gossypium hirsutum HOM05D004267 ORTHO05D005267 4.9e-64 248.1 167 66.5
AT4G32930 Arabidopsis thaliana HOM05D004267 ORTHO05D005267 6.4e-64 247.7 168 68.5
Sp7g30710 Schrenkiella parvula HOM05D004267 ORTHO05D005267 6.4e-64 247.7 168 67.9
Carub.0007s0755 Capsella rubella HOM05D004267 ORTHO05D005267 8.4e-64 247.3 168 68.5
Actinidia18200 Actinidia chinensis HOM05D004267 ORTHO05D005267 1.9e-63 246.1 164 66.5
AL7G18760 Arabidopsis lyrata HOM05D004267 ORTHO05D005267 1.9e-63 246.1 168 67.9
Gorai.009G047300 Gossypium raimondii HOM05D004267 ORTHO05D005267 1.9e-63 246.1 167 66.5
BraA03t15208Z Brassica rapa HOM05D004267 ORTHO05D005267 7.1e-63 244.2 178 65.2
DCAR_000778 Daucus carota HOM05D004267 ORTHO05D005267 1.2e-62 243.4 167 67.1
Cc08_g10140 Coffea canephora HOM05D004267 ORTHO05D005267 1.6e-62 243.0 167 66.5
Dinv27959 Davidia involucrata HOM05D004267 ORTHO05D005267 1.6e-62 243.0 167 65.3
Sc06g0000890 Simmondsia chinensis HOM05D004267 ORTHO05D005267 2.1e-62 242.7 167 65.3
vmacro05276 Vaccinium macrocarpon HOM05D004267 ORTHO05D005267 2.7e-62 242.3 174 63.8
Lj8A557T6 Lonicera japonica HOM05D004267 ORTHO05D005267 6.0e-62 241.1 167 66.5
Aa31LG2G6480 Aethionema arabicum HOM05D004267 ORTHO05D005267 3.0e-61 238.8 168 67.3
Solyc11g070060.2 Solanum lycopersicum HOM05D004267 ORTHO05D005267 3.0e-61 238.8 167 67.7
Lsat_1_v5_gn_3_28241 Lactuca sativa HOM05D004267 ORTHO05D005267 3.9e-61 238.4 165 65.5
arahy.Tifrunner.gnm1.ann1.97AHJW Arachis hypogaea HOM05D004267 ORTHO05D005267 6.7e-61 237.7 203 55.7
COL.COLO4_21022 Corchorus olitorius HOM05D004267 ORTHO05D005267 1.1e-60 236.9 189 60.3
TAR624G0139 Trochodendron aralioides HOM05D004267 ORTHO05D005267 1.1e-60 236.9 168 66.1
SEGI_14756 Sequoiadendron giganteum HOM05D004267 ORTHO05D005267 1.3e-59 233.4 167 61.7
Sabra06G0181900 Salix brachista HOM05D004267 ORTHO05D005267 2.4e-58 229.2 219 51.6
PSO210G6502 Papaver somniferum HOM05D004267 ORTHO05D005267 3.1e-58 228.8 167 61.1
PSO210G4696 Papaver somniferum HOM05D004267 ORTHO05D005267 1.2e-57 226.9 167 60.5
MBI04_g12184_MAGBIO Magnolia biondii HOM05D004267 ORTHO05D005267 4.5e-57 224.9 189 58.7
Aqoxy7G03943 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 3.8e-56 221.9 159 60.4
Sc09g0009630 Simmondsia chinensis HOM05D004267 ORTHO05D005267 3.8e-56 221.9 167 60.5
ECA246G5265 Erigeron canadensis HOM05D004267 ORTHO05D005267 2.1e-54 216.1 165 60.6
MELO3C010766.2 Cucumis melo HOM05D004267 ORTHO05D005267 4.6e-54 214.9 137 69.3
FAN27G1738 Fragaria x ananassa HOM05D004267 ORTHO05D005267 6.7e-53 211.1 175 57.7
Hund03363 Selenicereus undatus HOM05D004267 ORTHO05D005267 8.7e-53 210.7 189 51.9
Zm00001eb356880 Zea mays HOM05D004267 ORTHO05D005267 8.7e-53 210.7 165 60.6
HPP92_004580 Vanilla planifolia HOM05D004267 ORTHO05D005267 1.9e-52 209.5 166 60.2
EL10Ac2g03945 Beta vulgaris HOM05D004267 ORTHO05D005267 4.3e-52 208.4 167 55.7
Nitab4.5_0000664g0030 Nicotiana tabacum HOM05D006502 ORTHO05D005267 9.6e-52 207.2 131 68.7
Os01g0565600 Oryza sativa ssp. japonica HOM05D004267 ORTHO05D005267 2.4e-50 202.6 166 57.2
BcaNung02146 Brassica carinata HOM05D004267 ORTHO05D005267 2.2e-48 196.1 127 66.9
RcHm_v2.0_Chr6g0310431 Rosa chinensis HOM05D004267 ORTHO05D005267 6.5e-48 194.5 166 53.0
CARHR240940 Cardamine hirsuta HOM05D004267 ORTHO05D005267 1.2e-46 190.3 136 64.0
Mapoly0044s0101 Marchantia polymorpha HOM05D004267 ORTHO05D005267 2.1e-46 189.5 167 52.1
Gohir.D05G045900 Gossypium hirsutum HOM05D004267 ORTHO05D005267 4.6e-46 188.3 167 55.1
CDE07G0102 Ceratophyllum demersum HOM05D004267 ORTHO05D005267 1.0e-45 187.2 116 72.4
Aqoxy408s001 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 6.7e-45 184.5 126 63.5
Pp3c5_10040 Physcomitrium patens HOM05D004267 ORTHO05D005267 1.9e-44 183.0 167 53.3
Hund19479 Selenicereus undatus HOM05D004267 ORTHO05D005267 9.7e-44 180.6 178 47.2
Sopen11g028740 Solanum pennellii HOM05D004267 ORTHO05D005267 1.8e-42 176.4 167 53.3
FvH4_2g32260 Fragaria vesca HOM05D004267 ORTHO05D005267 1.2e-41 173.7 164 51.2
MD08G1073900 Malus domestica HOM05D004267 ORTHO05D005267 2.6e-41 172.6 177 50.3
DCAR_004449 Daucus carota HOM05D004267 ORTHO05D005267 2.9e-40 169.1 165 49.7
DCAR_004448 Daucus carota HOM05D004267 ORTHO05D005267 6.5e-40 167.9 166 47.6
arahy.Tifrunner.gnm1.ann1.BB3MLG Arachis hypogaea HOM05D004267 ORTHO05D005267 1.1e-39 167.2 97 72.2
arahy.Tifrunner.gnm1.ann1.JED36R Arachis hypogaea HOM05D004267 ORTHO05D005267 1.1e-39 167.2 97 72.2
CBR_g18691 Chara braunii HOM05D004267 ORTHO05D005267 7.2e-39 164.5 164 49.4
AUR62040201 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.2e-38 163.7 140 53.6
AUR62043052 Chenopodium quinoa HOM05D004267 ORTHO05D005267 3.6e-38 162.2 133 55.6
CDE07G1388 Ceratophyllum demersum HOM05D004267 ORTHO05D005267 6.7e-37 157.9 117 64.1
Nn6g35383 Nelumbo nucifera HOM05D004267 ORTHO05D005267 6.7e-37 157.9 122 57.4
SMO117G0066 Selaginella moellendorffii HOM05D004267 ORTHO05D005267 1.1e-36 157.1 165 46.7
AUR62009204 Chenopodium quinoa HOM05D004267 ORTHO05D005267 9.7e-36 154.1 136 50.7
FAN24G0417 Fragaria x ananassa HOM05D004267 ORTHO05D005267 5.3e-34 148.3 139 49.6
FAN15G2319 Fragaria x ananassa HOM05D004267 ORTHO05D005267 4.5e-33 145.2 150 48.0
Cpa.g.sc78.12 Carica papaya HOM05D004267 ORTHO05D005267 1.3e-32 143.7 98 65.3
Lsat_1_v5_gn_5_67680 Lactuca sativa HOM05D004267 ORTHO05D005267 5.0e-32 141.7 131 54.2
AagrBONN_evm.TU.Sc2ySwM_344.4469 Anthoceros agrestis HOM05D004267 ORTHO05D005267 1.1e-31 140.6 131 50.4
Zm00001eb159830 Zea mays HOM05D004267 ORTHO05D005267 2.6e-28 129.4 97 61.9
BcaC07g42315 Brassica carinata HOM05D004267 ORTHO05D005267 9.7e-28 127.5 183 43.2
Peaxi162Scf00545g00002 Petunia axillaris HOM05D004267 ORTHO05D005267 2.2e-24 116.3 149 43.6
GSVIVG01016838001 Vitis vinifera HOM05D004267 ORTHO05D005267 3.6e-22 109.0 165 37.6
GSVIVG01016840001 Vitis vinifera HOM05D004267 ORTHO05D005267 4.7e-22 108.6 165 38.2
Aqoxy7G03867 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 5.2e-21 105.1 126 40.5
Oeu057699.1 Olea europaea HOM05D004267 ORTHO05D005267 2.6e-20 102.8 112 45.5
Peaxi162Scf00545g00001 Petunia axillaris HOM05D004267 ORTHO05D005267 3.7e-19 99.0 101 48.5
Rhsim01G0086000 Rhododendron simsii HOM05D004267 ORTHO05D005267 1.8e-18 96.7 79 49.4
Aqoxy7G03891 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 9.1e-18 94.4 88 46.6
Cre09.g395800 Chlamydomonas reinhardtii HOM05D004267 ORTHO05D005267 3.6e-14 82.4 167 29.9
AUR62010512 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.3e-11 73.9 60 53.3
AUR62002213 Chenopodium quinoa HOM05D004267 ORTHO05D005267 2.8e-11 72.8 53 56.6
AUR62018016 Chenopodium quinoa HOM05D004267 ORTHO05D005267 2.8e-11 72.8 53 56.6
AUR62022800 Chenopodium quinoa HOM05D004267 ORTHO05D005267 4.8e-11 72.0 56 53.6
Nitab4.5_0001927g0060 Nicotiana tabacum HOM05D004267 ORTHO05D005267 8.2e-11 71.2 119 28.6
AUR62007889 Chenopodium quinoa HOM05D004267 ORTHO05D005267 2.4e-10 69.7 60 51.7
Thecc.06G107200 Theobroma cacao HOM05D004267 ORTHO05D044750 4.1e-10 68.9 127 33.1
VMungo1196G0001 Vigna mungo HOM05D005620 ORTHO05D005267 9.1e-10 67.8 43 65.1
Nitab4.5_0001927g0070 Nicotiana tabacum HOM05D004267 ORTHO05D005267 1.6e-09 67.0 61 44.3
BcaB05g24144 Brassica carinata HOM05D000010 ORTHO05D000063 2.7e-09 66.2 40 80.0
AUR62034857 Chenopodium quinoa HOM05D004267 ORTHO05D005267 3.5e-09 65.9 53 52.8
AUR62044607 Chenopodium quinoa HOM05D004267 ORTHO05D005267 7.7e-09 64.7 53 50.9
BcaB04g19156 Brassica carinata HOM05D004267 ORTHO05D096112 1.7e-08 63.5 39 76.9
MCO11G136 Micromonas commoda HOM05D004267 ORTHO05D005267 1.9e-07 60.1 166 26.5
AUR62036408 Chenopodium quinoa HOM05D001707 ORTHO05D001694 5.5e-07 58.5 43 60.5
Atru.chr12.1265 Acer truncatum HOM05D003550 ORTHO05D004336 8.0e-06 54.7 155 29.0


User provided reference genes

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