Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G0828 Cannabis sativa HOM05D006962 ORTHO05D008696 6.5e-106 387.5 210 100.0
CANSAT64G2900 Cannabis sativa HOM05D006962 ORTHO05D008696 8.1e-40 167.9 127 82.7
Prupe.1G224100 Prunus persica HOM05D006962 ORTHO05D008696 4.2e-36 155.6 208 46.2
QL03p052240 Quercus lobata HOM05D006962 ORTHO05D008696 2.1e-35 153.3 208 45.7
CiPaw.05G108100 Carya illinoinensis HOM05D006962 ORTHO05D008696 1.3e-32 144.1 218 47.2
Cfa009377 Carpinus fangiana HOM05D006962 ORTHO05D008696 7.6e-30 134.8 218 45.4
MD16G1121100 Malus domestica HOM05D006962 ORTHO05D008696 2.2e-29 133.3 225 44.0
GSVIVG01010505001 Vitis vinifera HOM05D006962 ORTHO05D008696 6.5e-29 131.7 195 46.2
Ciclev10032798m.g Citrus clementina HOM05D006962 ORTHO05D008696 1.4e-28 130.6 210 44.3
Gohir.A04G140400 Gossypium hirsutum HOM05D006962 ORTHO05D008696 1.4e-28 130.6 209 42.1
Thecc.02G205200 Theobroma cacao HOM05D006962 ORTHO05D008696 3.2e-28 129.4 209 43.1
Gohir.D04G183600 Gossypium hirsutum HOM05D006962 ORTHO05D008696 2.1e-27 126.7 212 41.5
CSS0033119 Camellia sinensis var. sinensis HOM05D006962 ORTHO05D008696 2.7e-27 126.3 210 41.4
Gohir.A03G124600 Gossypium hirsutum HOM05D006962 ORTHO05D008696 2.7e-27 126.3 190 45.3
Gorai.005G165400 Gossypium raimondii HOM05D006962 ORTHO05D008696 4.6e-27 125.6 191 46.1
Cc11_g17050 Coffea canephora HOM05D006962 ORTHO05D008696 1.3e-26 124.0 172 45.9
Nn3g16434 Nelumbo nucifera HOM05D006962 ORTHO05D008696 1.8e-26 123.6 214 44.4
Dinv17575 Davidia involucrata HOM05D006962 ORTHO05D008696 2.3e-26 123.2 215 43.3
Eucgr.B03508 Eucalyptus grandis HOM05D006962 ORTHO05D008696 2.3e-26 123.2 229 39.7
Gorai.012G176600 Gossypium raimondii HOM05D006962 ORTHO05D008696 2.3e-26 123.2 212 41.0
Gohir.D02G147600 Gossypium hirsutum HOM05D006962 ORTHO05D008696 5.1e-26 122.1 190 45.8
Duzib251G0823 Durio zibethinus HOM05D006962 ORTHO05D008696 6.7e-26 121.7 201 46.8
Manes.13G010300 Manihot esculenta HOM05D006962 ORTHO05D008696 1.1e-25 120.9 190 45.3
RcHm_v2.0_Chr4g0429971 Rosa chinensis HOM05D006962 ORTHO05D008696 1.9e-25 120.2 210 40.0
Haze_12436 Corylus avellana HOM05D006962 ORTHO05D008696 4.3e-25 119.0 232 39.7
FvH4_4g23570 Fragaria vesca HOM05D006962 ORTHO05D008696 7.4e-25 118.2 219 39.3
Peaxi162Scf00128g01332 Petunia axillaris HOM05D006962 ORTHO05D008696 9.7e-25 117.9 181 42.0
TWI75G0385 Tripterygium wilfordii HOM05D006962 ORTHO05D008696 9.7e-25 117.9 205 41.5
Potri.003G170700 Populus trichocarpa HOM05D006962 ORTHO05D008696 1.3e-24 117.5 198 42.9
Sc14g0009120 Simmondsia chinensis HOM05D006962 ORTHO05D008696 1.3e-24 117.5 191 41.9
TAR629G1477 Trochodendron aralioides HOM05D006962 ORTHO05D008696 1.3e-24 117.5 197 45.2
PGR102G1052 Punica granatum HOM05D006962 ORTHO05D008696 2.8e-24 116.3 176 42.6
PGSC0003DMG400034312 Solanum tuberosum HOM05D006962 ORTHO05D008696 2.8e-24 116.3 218 37.2
Nitab4.5_0006369g0010 Nicotiana tabacum HOM05D006962 ORTHO05D008696 1.4e-23 114.0 231 35.5
Sopen05g011100 Solanum pennellii HOM05D006962 ORTHO05D008696 1.8e-23 113.6 172 41.3
ClCG06G002190 Citrullus lanatus HOM05D006962 ORTHO05D008696 3.1e-23 112.8 202 39.6
Solyc05g015640.3 Solanum lycopersicum HOM05D006962 ORTHO05D008696 3.1e-23 112.8 217 37.3
COL.COLO4_20424 Corchorus olitorius HOM05D006962 ORTHO05D008696 1.2e-22 110.9 217 39.6
Glyma.18G005200 Glycine max HOM05D006962 ORTHO05D008696 2.0e-22 110.2 196 41.3
Nitab4.5_0000996g0010 Nicotiana tabacum HOM05D006962 ORTHO05D008696 2.0e-22 110.2 212 37.3
MELO3C022311.2 Cucumis melo HOM05D006962 ORTHO05D008696 4.5e-22 109.0 202 40.1
Medtr3g085060 Medicago truncatula HOM05D006962 ORTHO05D008696 1.0e-21 107.8 201 39.3
Ca_16448_v3 Cicer arietinum L. HOM05D006962 ORTHO05D008696 1.7e-21 107.1 195 40.5
Sabra03G0124800 Salix brachista HOM05D006962 ORTHO05D008696 1.7e-21 107.1 204 42.2
arahy.Tifrunner.gnm1.ann1.AWLH2F Arachis hypogaea HOM05D006962 ORTHO05D008696 2.9e-21 106.3 211 38.9
THA.LOC104807506 Tarenaya hassleriana HOM05D006962 ORTHO05D008696 6.5e-21 105.1 224 35.3
MBI07_g11269_MAGBIO Magnolia biondii HOM05D006962 ORTHO05D008696 1.1e-20 104.4 198 37.4
MSTRG.13306 Avicennia marina HOM05D006962 ORTHO05D008696 2.5e-20 103.2 216 38.9
MBI07_g28246_MAGBIO Magnolia biondii HOM05D006962 ORTHO05D008696 2.5e-20 103.2 201 36.8
CsaV3_6G008260 Cucumis sativus L. HOM05D006962 ORTHO05D008696 3.2e-20 102.8 205 36.6
Sabra01G0041700 Salix brachista HOM05D000660 ORTHO05D000766 4.2e-20 102.4 182 41.2
TAR636G2109 Trochodendron aralioides HOM05D006962 ORTHO05D008696 9.4e-20 101.3 195 42.1
Cpa.g.sc43.75 Carica papaya HOM05D006962 ORTHO05D008696 2.7e-19 99.8 139 44.6
CsaV3_4G003050 Cucumis sativus L. HOM05D006962 ORTHO05D008696 6.1e-19 98.6 205 41.0
VMungo1383G1469 Vigna mungo HOM05D006962 ORTHO05D008696 6.1e-19 98.6 200 39.0
Lj6g0020338 Lotus japonicus HOM05D006962 ORTHO05D008696 7.9e-19 98.2 194 37.6
AUR62028912 Chenopodium quinoa HOM05D006962 ORTHO05D008696 1.0e-18 97.8 166 39.2
Phvul.001G262900 Phaseolus vulgaris HOM05D006962 ORTHO05D008696 2.3e-18 96.7 195 36.9
AUR62005637 Chenopodium quinoa HOM05D006962 ORTHO05D008696 3.9e-18 95.9 146 41.1
PSO017G7099 Papaver somniferum HOM05D006962 ORTHO05D008696 6.7e-18 95.1 123 43.9
Psat5g097440 Pisum sativum HOM05D006962 ORTHO05D008696 6.7e-18 95.1 203 36.5
Atru.chr11.2343 Acer truncatum HOM05D006962 ORTHO05D008696 8.8e-18 94.7 123 46.3
ClCG07G015460 Citrullus lanatus HOM05D006962 ORTHO05D008696 8.8e-18 94.7 191 38.7
HanXRQChr08g0214941 Helianthus annuus HOM05D006962 ORTHO05D008696 1.1e-17 94.4 147 42.2
Potri.001G057700 Populus trichocarpa HOM05D006962 ORTHO05D008696 1.1e-17 94.4 185 37.3
CAN.G1124.2 Capsicum annuum HOM05D006962 ORTHO05D008696 2.0e-17 93.6 165 37.0
PSO478G2808 Papaver somniferum HOM05D006962 ORTHO05D008696 2.5e-17 93.2 123 43.9
Aqoxy3G01577 Aquilegia oxysepala HOM05D006962 ORTHO05D008696 3.3e-17 92.8 190 39.5
Lsat_1_v5_gn_4_641 Lactuca sativa HOM05D006962 ORTHO05D008696 3.3e-17 92.8 197 37.1
Actinidia08062 Actinidia chinensis HOM05D006962 ORTHO05D008696 4.3e-17 92.4 161 44.7
AL1G40700 Arabidopsis lyrata HOM05D006962 ORTHO05D008696 7.4e-17 91.7 205 36.1
A09p38640 Brassica napus HOM05D006962 ORTHO05D008696 1.3e-16 90.9 187 35.8
BraA09t39370Z Brassica rapa HOM05D006962 ORTHO05D008696 1.3e-16 90.9 187 35.8
Hma1.2p1_0657F.1_g197165 Hydrangea macrophylla HOM05D006962 ORTHO05D008696 1.7e-16 90.5 119 43.7
Hma1.2p1_0967F.1_g242360 Hydrangea macrophylla HOM05D006962 ORTHO05D008696 1.7e-16 90.5 119 43.7
C07p17910 Brassica napus HOM05D006962 ORTHO05D008696 3.7e-16 89.4 189 33.9
Gohir.D03G043133 Gossypium hirsutum HOM05D006962 ORTHO05D008696 3.7e-16 89.4 124 44.4
TPR.G17769 Trifolium pratense HOM05D006962 ORTHO05D008696 3.7e-16 89.4 212 34.4
Lalb_Chr23g0278151 Lupinus albus HOM05D006962 ORTHO05D008696 6.3e-16 88.6 110 44.5
Hund25473 Selenicereus undatus HOM05D006962 ORTHO05D008696 8.2e-16 88.2 185 33.5
C05p26000 Brassica napus HOM05D006962 ORTHO05D008696 2.4e-15 86.7 187 34.2
BolC5t31319H Brassica oleracea HOM05D006962 ORTHO05D008696 2.4e-15 86.7 187 34.8
BcaC05g26736 Brassica carinata HOM05D006962 ORTHO05D008696 4.1e-15 85.9 195 35.4
BolC7t42297H Brassica oleracea HOM05D006962 ORTHO05D008696 4.1e-15 85.9 189 33.3
BcaC05g26545 Brassica carinata HOM05D006962 ORTHO05D008696 5.3e-15 85.5 187 34.2
Sp1g23540 Schrenkiella parvula HOM05D006962 ORTHO05D008696 5.3e-15 85.5 204 33.8
BcaNung06812 Brassica carinata HOM05D006962 ORTHO05D008696 6.9e-15 85.1 184 34.8
Rhsim12G0024900 Rhododendron simsii HOM05D006962 ORTHO05D008696 6.9e-15 85.1 207 33.8
MELO3C032628.2 Cucumis melo HOM05D006962 ORTHO05D008696 1.2e-14 84.3 163 39.3
Migut.E00010 Erythranthe guttata HOM05D006962 ORTHO05D008696 1.2e-14 84.3 217 32.7
Gorai.003G044100 Gossypium raimondii HOM05D006962 ORTHO05D008696 2.0e-14 83.6 124 44.4
SGA_v2.0_scaffold87G27164 Striga asiatica HOM05D006962 ORTHO05D008696 2.0e-14 83.6 154 37.0
Sed0011154 Sechium edule HOM05D006962 ORTHO05D008696 2.6e-14 83.2 164 39.0
Ah.03g136040 Amaranthus hybridus HOM05D006962 ORTHO05D008696 3.4e-14 82.8 122 39.3
ECA234G1956 Erigeron canadensis HOM05D006962 ORTHO05D008696 3.4e-14 82.8 131 39.7
Carub.0001s2583 Capsella rubella HOM05D006962 ORTHO05D008696 1.0e-13 81.3 207 35.3
ATR0561G196 Amborella trichopoda HOM05D006962 ORTHO05D008696 2.2e-13 80.1 161 34.8
CDE05G3434 Ceratophyllum demersum HOM05D006962 ORTHO05D008696 2.2e-13 80.1 196 31.6
Thhalv10008828m.g Eutrema salsugineum HOM05D006962 ORTHO05D008696 2.2e-13 80.1 197 33.5
Glyma.11G251800 Glycine max HOM05D006962 ORTHO05D008696 8.5e-13 78.2 149 41.6
CARHR026870 Cardamine hirsuta HOM05D006962 ORTHO05D008696 1.1e-12 77.8 187 34.2
A07p11980 Brassica napus HOM05D006962 ORTHO05D008696 4.2e-12 75.9 216 30.1
TAR629G0477 Trochodendron aralioides HOM05D006962 ORTHO05D008696 9.4e-12 74.7 67 58.2
Aa31LG7G9900 Aethionema arabicum HOM05D006962 ORTHO05D008696 1.2e-11 74.3 181 33.1
Os02g0509600 Oryza sativa ssp. japonica HOM05D006962 ORTHO05D008696 1.2e-11 74.3 168 32.7
BraA07t28983Z Brassica rapa HOM05D006962 ORTHO05D008696 2.1e-11 73.6 216 29.6
BcaB03g14005 Brassica carinata HOM05D006962 ORTHO05D008696 2.7e-11 73.2 185 31.9
AT1G27300 Arabidopsis thaliana HOM05D006962 ORTHO05D008696 6.7e-10 68.6 205 31.7
DCAR_007000 Daucus carota HOM05D006962 ORTHO05D008696 2.6e-09 66.6 173 33.5
Zm00001eb180910 Zea mays HOM05D006962 ORTHO05D008696 9.7e-09 64.7 157 31.8
HPP92_023534 Vanilla planifolia HOM05D006962 ORTHO05D008696 3.7e-08 62.8 170 32.4


User provided reference genes

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