Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G0804 Cannabis sativa HOM05D000003 ORTHO05D000167 1.0e-136 490.0 227 100.0
CANSAT56G2655 Cannabis sativa HOM05D003586 ORTHO05D004036 3.8e-51 205.7 107 86.9
CANSAT56G2371 Cannabis sativa HOM05D000003 ORTHO05D000004 6.7e-40 168.3 221 35.3
CANSAT25G2359 Cannabis sativa HOM05D000003 ORTHO05D000167 2.2e-27 126.7 190 34.2
CANSAT54G2332 Cannabis sativa HOM05D000003 ORTHO05D000167 8.3e-22 108.2 159 32.1
Atru.chr11.167 Acer truncatum HOM05D000003 ORTHO05D000006 7.0e-21 105.1 233 28.3
Atru.chr13.1037 Acer truncatum HOM05D000003 ORTHO05D000167 2.7e-20 103.2 194 30.4
Atru.chr1.1181 Acer truncatum HOM05D000003 ORTHO05D000167 2.3e-19 100.1 214 32.2
Atru.chr12.386 Acer truncatum HOM05D000003 ORTHO05D000004 3.3e-18 96.3 176 27.8
Atru.chr2.2490 Acer truncatum HOM05D000003 ORTHO05D000004 5.6e-18 95.5 219 26.9
CANSAT25G2032 Cannabis sativa HOM05D000003 ORTHO05D000004 5.6e-18 95.5 171 29.2
Atru.chr11.1731 Acer truncatum HOM05D000003 ORTHO05D000167 7.2e-18 95.1 218 28.9
CANSAT80G2659 Cannabis sativa HOM05D000003 ORTHO05D000167 1.2e-17 94.4 178 28.1
CANSAT01G1807 Cannabis sativa HOM05D000003 ORTHO05D000167 1.6e-17 94.0 174 28.7
Atru.chr6.783 Acer truncatum HOM05D000003 ORTHO05D000004 4.7e-17 92.4 189 29.6
CANSAT80G2517 Cannabis sativa HOM05D000003 ORTHO05D000167 1.0e-16 91.3 155 29.7
QL04p056296 Quercus lobata HOM05D000003 ORTHO05D000004 3.0e-16 89.7 199 29.1
Atru.chr13.1676 Acer truncatum HOM05D000003 ORTHO05D000006 5.2e-16 89.0 206 27.2
Atru.chr13.2526 Acer truncatum HOM05D000003 ORTHO05D000167 5.2e-16 89.0 224 26.8
CANSAT11G0632 Cannabis sativa HOM05D000003 ORTHO05D000004 6.8e-16 88.6 193 26.9
QL03p039168 Quercus lobata HOM05D000003 ORTHO05D000167 1.2e-15 87.8 190 30.5
Atru.chr8.816 Acer truncatum HOM05D000003 ORTHO05D000004 1.5e-15 87.4 193 28.5
CANSAT11G2679 Cannabis sativa HOM05D000003 ORTHO05D000004 1.5e-15 87.4 194 27.8
Atru.chr10.1536 Acer truncatum HOM05D000003 ORTHO05D000167 2.0e-15 87.0 195 28.7
QL09p014828 Quercus lobata HOM05D000003 ORTHO05D000004 3.4e-15 86.3 220 26.4
QL10p056321 Quercus lobata HOM05D000003 ORTHO05D000167 3.4e-15 86.3 172 27.3
Atru.chr3.2272 Acer truncatum HOM05D000003 ORTHO05D000004 5.7e-15 85.5 206 26.7
Atru.chr8.1655 Acer truncatum HOM05D000003 ORTHO05D000167 7.5e-15 85.1 220 27.7
Atru.chr8.782 Acer truncatum HOM05D000003 ORTHO05D000004 1.7e-14 84.0 222 27.0
Atru.chr6.145 Acer truncatum HOM05D000003 ORTHO05D000167 2.2e-14 83.6 226 27.4
Atru.chr11.1957 Acer truncatum HOM05D000003 ORTHO05D000167 2.9e-14 83.2 189 29.1
Atru.chr10.114 Acer truncatum HOM05D000003 ORTHO05D000167 8.3e-14 81.6 224 25.4
Atru.chr10.97 Acer truncatum HOM05D000003 ORTHO05D000167 8.3e-14 81.6 224 25.4
QL11p037218 Quercus lobata HOM05D000130 ORTHO05D000004 1.1e-13 81.3 175 28.6
Atru.chr7.396 Acer truncatum HOM05D000003 ORTHO05D000167 1.4e-13 80.9 189 29.1
Sed0004185 Sechium edule HOM05D000003 ORTHO05D000004 1.4e-13 80.9 230 25.7
CANSAT78G0319 Cannabis sativa HOM05D000003 ORTHO05D000167 1.8e-13 80.5 187 26.7
CANSAT01G0882 Cannabis sativa HOM05D000003 ORTHO05D000167 2.4e-13 80.1 230 24.8
Atru.chr2.2201 Acer truncatum HOM05D000003 ORTHO05D000004 3.2e-13 79.7 221 26.7
Atru.chr4.1214 Acer truncatum HOM05D000003 ORTHO05D000167 5.4e-13 79.0 223 26.5
Atru.chr4.1218 Acer truncatum HOM05D000003 ORTHO05D000167 5.4e-13 79.0 210 27.1
Atru.chr4.2116 Acer truncatum HOM05D000003 ORTHO05D000004 5.4e-13 79.0 205 27.3
Atru.chr9.494 Acer truncatum HOM05D000003 ORTHO05D000006 5.4e-13 79.0 158 27.8
RcHm_v2.0_Chr4g0398671 Rosa chinensis HOM05D000003 ORTHO05D010102 5.4e-13 79.0 208 26.9
CANSAT64G0477 Cannabis sativa HOM05D000003 ORTHO05D000004 7.0e-13 78.6 142 31.7
Sed0015769 Sechium edule HOM05D000003 ORTHO05D000004 7.0e-13 78.6 214 24.3
Atru.chr5.3359 Acer truncatum HOM05D000003 ORTHO05D000004 1.2e-12 77.8 237 26.6
QL05p017790 Quercus lobata HOM05D000003 ORTHO05D000167 1.2e-12 77.8 180 30.6
Atru.chr2.1933 Acer truncatum HOM05D000003 ORTHO05D000004 2.0e-12 77.0 197 25.4
Atru.chr13.1523 Acer truncatum HOM05D000003 ORTHO05D000004 2.7e-12 76.6 188 25.5
CANSAT21G0265 Cannabis sativa HOM05D000003 ORTHO05D000167 3.5e-12 76.3 187 26.2
CANSAT78G0390 Cannabis sativa HOM05D000003 ORTHO05D000004 7.8e-12 75.1 155 28.4
RcHm_v2.0_Chr3g0468731 Rosa chinensis HOM05D008097 ORTHO05D010102 7.8e-12 75.1 202 29.7
CANSAT54G2356 Cannabis sativa HOM05D000003 ORTHO05D000004 1.3e-11 74.3 202 27.2
CiPaw.03G190200 Carya illinoinensis HOM05D000003 ORTHO05D000167 1.3e-11 74.3 186 29.6
Atru.chr6.1288 Acer truncatum HOM05D000003 ORTHO05D000004 2.3e-11 73.6 215 26.5
QL04p067637 Quercus lobata HOM05D000003 ORTHO05D000004 2.3e-11 73.6 129 28.7
CiPaw.07G069100 Carya illinoinensis HOM05D000003 ORTHO05D000167 3.9e-11 72.8 147 29.3
QL05p026767 Quercus lobata HOM05D000003 ORTHO05D000167 3.9e-11 72.8 131 32.1
Sed0019957 Sechium edule HOM05D000003 ORTHO05D000004 3.9e-11 72.8 216 24.1
Atru.chr1.2556 Acer truncatum HOM05D000003 ORTHO05D000004 5.0e-11 72.4 176 27.3
Atru.chr9.1321 Acer truncatum HOM05D000003 ORTHO05D000167 8.6e-11 71.6 188 27.1
COL.COLO4_08437 Corchorus olitorius HOM05D000003 ORTHO05D000167 8.6e-11 71.6 170 25.9
EL10Ac8g18252 Beta vulgaris HOM05D000003 ORTHO05D000004 1.1e-10 71.2 174 28.7
EL10Ac5g12187 Beta vulgaris HOM05D000003 ORTHO05D000006 1.5e-10 70.9 176 28.4
TPR.G631 Trifolium pratense HOM05D000003 ORTHO05D000004 1.5e-10 70.9 127 30.7
CANSAT54G0625 Cannabis sativa HOM05D000003 ORTHO05D000004 1.9e-10 70.5 122 27.0
QL12p025805 Quercus lobata HOM05D000967 ORTHO05D000796 3.3e-10 69.7 125 30.4
Atru.chr5.2695 Acer truncatum HOM05D000003 ORTHO05D000167 4.3e-10 69.3 119 30.3
TPR.G34771 Trifolium pratense HOM05D000003 ORTHO05D000004 4.3e-10 69.3 127 29.9
CANSAT64G2879 Cannabis sativa HOM05D000003 ORTHO05D000004 5.6e-10 68.9 188 23.9
Atru.chr1.1940 Acer truncatum HOM05D000003 ORTHO05D000004 7.3e-10 68.6 214 24.3
QL12p029380 Quercus lobata HOM05D000003 ORTHO05D000004 7.3e-10 68.6 131 31.3
Atru.chr6.1125 Acer truncatum HOM05D000003 ORTHO05D000167 9.5e-10 68.2 122 28.7
Atru.chr4.252 Acer truncatum HOM05D000003 ORTHO05D000004 1.2e-09 67.8 183 26.2
Aa31LG9G6690 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.6e-09 67.4 200 26.5
CANSAT54G2709 Cannabis sativa HOM05D000003 ORTHO05D000004 2.1e-09 67.0 122 29.5
QL05p053348 Quercus lobata HOM05D000003 ORTHO05D000167 2.1e-09 67.0 150 24.0
Aa31sc502G20 Aethionema arabicum HOM05D000003 ORTHO05D000004 3.6e-09 66.2 207 29.0
CANSAT56G3747 Cannabis sativa HOM05D000003 ORTHO05D000167 4.7e-09 65.9 163 22.7
QL05p026414 Quercus lobata HOM05D000103 ORTHO05D000049 4.7e-09 65.9 128 27.3
Atru.chr1.1905 Acer truncatum HOM05D000003 ORTHO05D000022 6.2e-09 65.5 180 28.3
CANSAT56G1530 Cannabis sativa HOM05D000003 ORTHO05D000167 6.2e-09 65.5 185 25.4
CANSAT64G0114 Cannabis sativa HOM05D000003 ORTHO05D000167 6.2e-09 65.5 193 23.8
TWI09G0364 Tripterygium wilfordii HOM05D000003 ORTHO05D000167 6.2e-09 65.5 183 24.6
Atru.chr6.1170 Acer truncatum HOM05D000003 ORTHO05D000022 1.0e-08 64.7 182 27.5
Atru.chr5.1622 Acer truncatum HOM05D000003 ORTHO05D000004 1.4e-08 64.3 188 25.0
Ah.10g028600 Amaranthus hybridus HOM05D021079 ORTHO05D000167 1.4e-08 64.3 169 26.0
Ah.10g028840 Amaranthus hybridus HOM05D021079 ORTHO05D000167 1.4e-08 64.3 169 26.0
PSO447G0022 Papaver somniferum HOM05D000003 ORTHO05D000004 1.4e-08 64.3 204 21.6
QL02p041162 Quercus lobata HOM05D000003 ORTHO05D000004 1.4e-08 64.3 133 25.6
TWI23G1168 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 1.4e-08 64.3 199 26.1
Gohir.A11G223375 Gossypium hirsutum HOM05D059849 ORTHO05D013581 1.8e-08 63.9 85 37.6
QL02p000576 Quercus lobata HOM05D002132 ORTHO05D002168 1.8e-08 63.9 95 32.6
CANSAT64G0231 Cannabis sativa HOM05D000003 ORTHO05D000167 2.3e-08 63.5 157 26.1
Atru.chr6.1082 Acer truncatum HOM05D000003 ORTHO05D000167 3.1e-08 63.2 117 28.2
Atru.chr9.674 Acer truncatum HOM05D000003 ORTHO05D000004 3.1e-08 63.2 214 25.7
CANSAT01G1968 Cannabis sativa HOM05D000003 ORTHO05D000004 3.1e-08 63.2 234 22.2
QL04p088136 Quercus lobata HOM05D000003 ORTHO05D000004 3.1e-08 63.2 109 31.2
QL11p053095 Quercus lobata HOM05D000003 ORTHO05D000167 4.0e-08 62.8 191 24.6
QL11p053175 Quercus lobata HOM05D000003 ORTHO05D000004 5.2e-08 62.4 118 29.7
TAR211G0003 Trochodendron aralioides HOM05D000003 ORTHO05D000004 5.2e-08 62.4 168 29.8
CANSAT80G2424 Cannabis sativa HOM05D000003 ORTHO05D000004 6.8e-08 62.0 119 26.9
CiPaw.11G093000 Carya illinoinensis HOM05D000003 ORTHO05D000004 6.8e-08 62.0 171 27.5
QL09p054057 Quercus lobata HOM05D000003 ORTHO05D000004 8.9e-08 61.6 181 24.9
Atru.chr10.713 Acer truncatum HOM05D000003 ORTHO05D000022 1.2e-07 61.2 183 24.6
Atru.chr7.622 Acer truncatum HOM05D000003 ORTHO05D000004 1.2e-07 61.2 183 25.7
FAN25G3685 Fragaria x ananassa HOM05D008097 ORTHO05D010102 1.2e-07 61.2 165 22.4
PSO339G5018 Papaver somniferum HOM05D000003 ORTHO05D000004 1.2e-07 61.2 202 22.8
QL01p005053 Quercus lobata HOM05D000003 ORTHO05D000004 1.2e-07 61.2 125 27.2
QL04p039404 Quercus lobata HOM05D000003 ORTHO05D000004 1.2e-07 61.2 128 28.1
Atru.chr1.1692 Acer truncatum HOM05D000003 ORTHO05D000167 1.5e-07 60.8 101 34.7
Atru.chr4.1942 Acer truncatum HOM05D000003 ORTHO05D000004 1.5e-07 60.8 169 28.4
PSO210G4338 Papaver somniferum HOM05D000003 ORTHO05D000004 1.5e-07 60.8 196 24.0
QL05p057131 Quercus lobata HOM05D000003 ORTHO05D000167 1.5e-07 60.8 120 28.3
TPR.G7449 Trifolium pratense HOM05D000003 ORTHO05D014649 1.5e-07 60.8 146 22.6
Atru.chr4.2571 Acer truncatum HOM05D000003 ORTHO05D000167 2.0e-07 60.5 174 27.6
Aa31LG7G12700 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.0e-07 60.5 100 35.0
Aa31sc210G10 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.0e-07 60.5 103 34.0
Atru.chr1.956 Acer truncatum HOM05D000003 ORTHO05D000006 2.6e-07 60.1 168 25.6
COL.COLO4_28522 Corchorus olitorius HOM05D000003 ORTHO05D000126 2.6e-07 60.1 181 22.7
Aqoxy5G02089 Aquilegia oxysepala HOM05D000003 ORTHO05D000651 3.4e-07 59.7 231 23.8
CSS0031820 Camellia sinensis var. sinensis HOM05D000698 ORTHO05D000004 3.4e-07 59.7 187 24.1
TWI73G0607 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 3.4e-07 59.7 200 25.0
Aa31LG1G5430 Aethionema arabicum HOM05D000003 ORTHO05D009772 4.4e-07 59.3 102 30.4
FAN25G2016 Fragaria x ananassa HOM05D008097 ORTHO05D010102 4.4e-07 59.3 154 23.4
QL01p035119 Quercus lobata HOM05D000003 ORTHO05D000167 4.4e-07 59.3 173 26.0
BcaB02g08571 Brassica carinata HOM05D000003 ORTHO05D000925 5.8e-07 58.9 102 34.3
CANSAT80G0559 Cannabis sativa HOM05D000003 ORTHO05D000004 7.5e-07 58.5 178 24.7
Atru.chr1.2408 Acer truncatum HOM05D000003 ORTHO05D000004 9.8e-07 58.2 182 28.0
Atru.chr2.1550 Acer truncatum HOM05D000003 ORTHO05D000167 9.8e-07 58.2 75 34.7
Atru.chr3.1768 Acer truncatum HOM05D000003 ORTHO05D000167 9.8e-07 58.2 104 26.0
Aa31LG7G2740 Aethionema arabicum HOM05D000003 ORTHO05D000004 9.8e-07 58.2 199 22.1
BcaB08g35769 Brassica carinata HOM05D000003 ORTHO05D001498 9.8e-07 58.2 184 26.1
CANSAT80G2762 Cannabis sativa HOM05D000003 ORTHO05D000167 9.8e-07 58.2 178 25.8
BcaB05g22683 Brassica carinata HOM05D000003 ORTHO05D001498 1.3e-06 57.8 160 26.2
COL.COLO4_29952 Corchorus olitorius HOM05D039001 ORTHO05D000167 1.3e-06 57.8 159 25.8
Manes.05G188350 Manihot esculenta HOM05D000003 ORTHO05D000004 1.3e-06 57.8 159 28.9
QL11p039844 Quercus lobata HOM05D000003 ORTHO05D011877 1.3e-06 57.8 158 23.4
TWI79G0690 Tripterygium wilfordii HOM05D000003 ORTHO05D000167 1.3e-06 57.8 147 27.9
Atru.chr1.1364 Acer truncatum HOM05D000003 ORTHO05D000167 2.2e-06 57.0 98 33.7
Aa31LG2G16390 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.2e-06 57.0 100 35.0
BcaNung01203 Brassica carinata HOM05D000003 ORTHO05D000004 2.2e-06 57.0 193 24.4
CANSAT56G0779 Cannabis sativa HOM05D000003 ORTHO05D000004 2.2e-06 57.0 81 29.6
FAN16G0608 Fragaria x ananassa HOM05D008097 ORTHO05D010102 2.2e-06 57.0 165 21.2
QL09p015564 Quercus lobata HOM05D000003 ORTHO05D000004 2.2e-06 57.0 95 30.5
Aa31LG7G12380 Aethionema arabicum HOM05D000003 ORTHO05D009772 2.9e-06 56.6 104 32.7
Prupe.7G049300 Prunus persica HOM05D000003 ORTHO05D000004 2.9e-06 56.6 190 24.7
QL09p031838 Quercus lobata HOM05D000003 ORTHO05D000004 2.9e-06 56.6 132 25.0
Atru.chr5.1667 Acer truncatum HOM05D000003 ORTHO05D000004 3.7e-06 56.2 153 25.5
AT3G09510 Arabidopsis thaliana HOM05D000003 ORTHO05D000004 3.7e-06 56.2 201 26.4
PSO782G5746 Papaver somniferum HOM05D000003 ORTHO05D000004 3.7e-06 56.2 165 26.7
Manes.17G011401 Manihot esculenta HOM05D000003 ORTHO05D000167 4.9e-06 55.8 108 31.5
TWI31G1141 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 4.9e-06 55.8 135 24.4
ClCG05G010290 Citrullus lanatus HOM05D000003 ORTHO05D000004 6.4e-06 55.5 133 27.1
Atru.chr1.1585 Acer truncatum HOM05D000003 ORTHO05D000167 8.3e-06 55.1 109 32.1
Aa31LG11G6710 Aethionema arabicum HOM05D000003 ORTHO05D009772 8.3e-06 55.1 200 24.0
C09p39900 Brassica napus HOM05D000003 ORTHO05D000004 8.3e-06 55.1 195 25.1
COL.COLO4_22308 Corchorus olitorius HOM05D000003 ORTHO05D017149 8.3e-06 55.1 157 26.1


User provided reference genes

Program Settings