Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G0747 Cannabis sativa HOM05D006988 ORTHO05D008731 1.7e-117 426.0 212 100.0
Gohir.A07G147500 Gossypium hirsutum HOM05D006988 ORTHO05D008731 1.6e-83 313.2 189 83.1
Gorai.001G175700 Gossypium raimondii HOM05D006988 ORTHO05D008731 2.7e-83 312.4 201 79.6
Gohir.D07G153600 Gossypium hirsutum HOM05D006988 ORTHO05D008731 4.6e-83 311.6 201 79.6
Haze_02728 Corylus avellana HOM05D006988 ORTHO05D008731 7.9e-83 310.8 198 78.8
Potri.014G058400 Populus trichocarpa HOM05D006988 ORTHO05D008731 1.3e-82 310.1 215 74.0
Duzib133G0505 Durio zibethinus HOM05D006988 ORTHO05D008731 6.6e-82 307.8 191 81.7
MELO3C021141.2 Cucumis melo HOM05D006988 ORTHO05D008731 8.7e-82 307.4 210 76.2
Manes.01G270400 Manihot esculenta HOM05D006988 ORTHO05D008731 1.9e-81 306.2 215 74.0
ClCG06G003000 Citrullus lanatus HOM05D006988 ORTHO05D008731 4.3e-81 305.1 210 75.2
CiPaw.13G030900 Carya illinoinensis HOM05D006988 ORTHO05D008731 7.3e-81 304.3 222 72.1
CsaV3_6G009120 Cucumis sativus L. HOM05D006988 ORTHO05D008731 9.6e-81 303.9 210 75.2
Sabra14G0042600 Salix brachista HOM05D006988 ORTHO05D008731 1.3e-80 303.5 215 73.0
COL.COLO4_12466 Corchorus olitorius HOM05D006988 ORTHO05D008731 2.1e-80 302.8 198 78.8
Prupe.2G135300 Prunus persica HOM05D006988 ORTHO05D008731 2.1e-80 302.8 205 76.1
Thecc.01G386200 Theobroma cacao HOM05D006988 ORTHO05D008731 8.1e-80 300.8 198 77.3
Ca_27093_v3 Cicer arietinum L. HOM05D006988 ORTHO05D008731 1.1e-79 300.4 217 72.4
Atru.chr5.214 Acer truncatum HOM05D006988 ORTHO05D008731 1.8e-79 299.7 200 77.0
MD07G1111900 Malus domestica HOM05D006988 ORTHO05D008731 2.4e-79 299.3 204 76.5
Sed0016586 Sechium edule HOM05D006988 ORTHO05D008731 2.4e-79 299.3 199 76.9
FAN03G1007 Fragaria x ananassa HOM05D006988 ORTHO05D008731 4.0e-79 298.5 204 73.0
Sopen10g008330 Solanum pennellii HOM05D006988 ORTHO05D008731 5.3e-79 298.1 213 71.8
QL04p035766 Quercus lobata HOM05D006988 ORTHO05D008731 6.9e-79 297.7 217 71.9
Solyc10g018590.2 Solanum lycopersicum HOM05D006988 ORTHO05D008731 1.2e-78 297.0 213 72.3
CSS0001978 Camellia sinensis var. sinensis HOM05D006988 ORTHO05D008731 2.0e-78 296.2 197 77.2
VMungo1383G3408 Vigna mungo HOM05D006988 ORTHO05D008731 2.0e-78 296.2 207 72.9
CSS0011747 Camellia sinensis var. sinensis HOM05D006988 ORTHO05D008731 4.5e-78 295.0 197 76.6
THA.LOC104814078 Tarenaya hassleriana HOM05D006988 ORTHO05D008731 9.9e-78 293.9 196 74.0
FvH4_7g10720 Fragaria vesca HOM05D006988 ORTHO05D008731 1.7e-77 293.1 205 73.7
Hma1.2p1_0341F.1_g130300 Hydrangea macrophylla HOM05D006988 ORTHO05D008731 1.7e-77 293.1 199 71.9
Lj1g0025695 Lotus japonicus HOM05D006988 ORTHO05D008731 1.7e-77 293.1 214 71.0
arahy.Tifrunner.gnm1.ann1.EWF75K Arachis hypogaea HOM05D006988 ORTHO05D008731 2.2e-77 292.7 220 70.0
arahy.Tifrunner.gnm1.ann1.I2GGUW Arachis hypogaea HOM05D006988 ORTHO05D008731 2.2e-77 292.7 220 70.0
Phvul.008G157000 Phaseolus vulgaris HOM05D006988 ORTHO05D008731 8.4e-77 290.8 190 75.8
FAN06G2548 Fragaria x ananassa HOM05D006988 ORTHO05D008731 1.1e-76 290.4 210 71.0
FAN06G3033 Fragaria x ananassa HOM05D006988 ORTHO05D008731 1.4e-76 290.0 206 72.8
Glyma.01G076100 Glycine max HOM05D006988 ORTHO05D008731 1.4e-76 290.0 189 75.1
Nn6g33931 Nelumbo nucifera HOM05D006988 ORTHO05D008731 2.4e-76 289.3 186 76.9
TAR636G1375 Trochodendron aralioides HOM05D006988 ORTHO05D008731 2.4e-76 289.3 219 69.4
Medtr7g444820 Medicago truncatula HOM05D006988 ORTHO05D008731 4.2e-76 288.5 177 81.4
PGSC0003DMG400011763 Solanum tuberosum HOM05D006988 ORTHO05D008731 5.4e-76 288.1 213 69.5
COL.COLO4_37993 Corchorus olitorius HOM05D006988 ORTHO05D008731 2.1e-75 286.2 189 75.1
CARHR248070 Cardamine hirsuta HOM05D006988 ORTHO05D008731 4.6e-75 285.0 183 76.0
Rhsim07G0032500 Rhododendron simsii HOM05D006988 ORTHO05D008731 6.0e-75 284.6 176 78.4
Dinv43657 Davidia involucrata HOM05D006988 ORTHO05D008731 7.9e-75 284.3 198 71.2
Peaxi162Scf00350g00014 Petunia axillaris HOM05D006988 ORTHO05D008731 1.0e-74 283.9 204 71.1
Hund17063 Selenicereus undatus HOM05D006988 ORTHO05D008731 5.1e-74 281.6 225 65.8
Glyma.11G164037 Glycine max HOM05D006988 ORTHO05D008731 1.5e-73 280.0 190 73.2
BcaC04g24207 Brassica carinata HOM05D006988 ORTHO05D008731 2.5e-73 279.3 185 75.1
BolC9t52942H Brassica oleracea HOM05D006988 ORTHO05D008731 2.5e-73 279.3 185 75.1
Lj9A563T51 Lonicera japonica HOM05D006988 ORTHO05D008731 2.5e-73 279.3 194 72.7
Sp6g00080 Schrenkiella parvula HOM05D006988 ORTHO05D008731 2.5e-73 279.3 195 72.3
C09p00070 Brassica napus HOM05D006988 ORTHO05D008731 7.4e-73 277.7 180 75.6
BraA09t35681Z Brassica rapa HOM05D006988 ORTHO05D008731 7.4e-73 277.7 180 75.6
BcaB01g02207 Brassica carinata HOM05D006988 ORTHO05D008731 9.6e-73 277.3 213 67.6
AUR62004148 Chenopodium quinoa HOM05D006988 ORTHO05D008731 9.6e-73 277.3 203 69.0
Aqoxy7G00790 Aquilegia oxysepala HOM05D006988 ORTHO05D008731 1.3e-72 276.9 213 67.1
Carub.0006s3719 Capsella rubella HOM05D006988 ORTHO05D008731 3.7e-72 275.4 180 72.8
AUR62013709 Chenopodium quinoa HOM05D006988 ORTHO05D008731 3.7e-72 275.4 203 68.5
Cc02_g24580 Coffea canephora HOM05D006988 ORTHO05D008731 6.2e-72 274.6 177 75.1
AL6G53480 Arabidopsis lyrata HOM05D006988 ORTHO05D008731 8.1e-72 274.2 204 68.1
MBI04_g09512_MAGBIO Magnolia biondii HOM05D006988 ORTHO05D008731 1.1e-71 273.9 214 67.8
EL10Ac1g00818 Beta vulgaris HOM05D006988 ORTHO05D008731 1.8e-71 273.1 196 69.9
Lsat_1_v5_gn_7_10320 Lactuca sativa HOM05D006988 ORTHO05D008731 1.8e-71 273.1 201 68.2
Migut.B01575 Erythranthe guttata HOM05D006988 ORTHO05D008731 6.9e-71 271.2 194 67.5
CAN.G160.69 Capsicum annuum HOM05D006988 ORTHO05D008731 1.2e-70 270.4 195 71.3
SEGI_39512 Sequoiadendron giganteum HOM05D006988 ORTHO05D008731 5.8e-70 268.1 179 72.6
ATR0317G076 Amborella trichopoda HOM05D006988 ORTHO05D008731 1.3e-69 266.9 185 71.4
SalBow5G4855 Salvia bowleyana HOM05D006988 ORTHO05D008731 1.3e-69 266.9 219 64.8
AT4G00030 Arabidopsis thaliana HOM05D006988 ORTHO05D008731 2.9e-69 265.8 199 65.8
Nitab4.5_0000882g0050 Nicotiana tabacum HOM05D006988 ORTHO05D008731 2.9e-69 265.8 229 64.6
Aa31LG5G100 Aethionema arabicum HOM05D006988 ORTHO05D008731 1.1e-68 263.8 206 66.0
PSO170G6265 Papaver somniferum HOM05D006988 ORTHO05D008731 9.3e-68 260.8 179 74.9
DCAR_031865 Daucus carota HOM05D006988 ORTHO05D008731 1.6e-67 260.0 210 64.3
ECA236G3211 Erigeron canadensis HOM05D006988 ORTHO05D008731 1.3e-66 256.9 205 64.4
TPR.G39083 Trifolium pratense HOM05D006988 ORTHO05D008731 3.0e-66 255.8 146 84.9
Nitab4.5_0001501g0030 Nicotiana tabacum HOM05D006988 ORTHO05D008731 3.9e-66 255.4 185 71.9
Ciclev10022767m.g Citrus clementina HOM05D006988 ORTHO05D008731 5.7e-65 251.5 143 86.0
HanXRQChr06g0168881 Helianthus annuus HOM05D006988 ORTHO05D008731 7.4e-65 251.1 204 65.7
TWI59G0585 Tripterygium wilfordii HOM05D006988 ORTHO05D008731 6.2e-64 248.1 208 66.8
SGA_v2.0_scaffold153G36954 Striga asiatica HOM05D006988 ORTHO05D008731 9.0e-63 244.2 209 59.3
Cpa.g.sc620.2 Carica papaya HOM05D006988 ORTHO05D008731 1.2e-62 243.8 182 70.9
RcHm_v2.0_Chr1g0348671 Rosa chinensis HOM05D006988 ORTHO05D008731 1.5e-62 243.4 175 72.6
GSVIVG01018209001 Vitis vinifera HOM05D006988 ORTHO05D008731 7.6e-62 241.1 143 82.5
Pp3c14_7270 Physcomitrium patens HOM05D006988 ORTHO05D008731 1.3e-58 230.3 195 60.5
Os04g0551700 Oryza sativa ssp. japonica HOM05D006988 ORTHO05D008731 2.3e-58 229.6 175 65.1
Zm00001eb257570 Zea mays HOM05D006988 ORTHO05D008731 1.1e-57 227.3 175 64.0
Mapoly0004s0296 Marchantia polymorpha HOM05D006988 ORTHO05D008731 2.5e-57 226.1 169 65.7
FAN01G2452 Fragaria x ananassa HOM05D006988 ORTHO05D008731 4.3e-57 225.3 170 69.4
Eucgr.D02502 Eucalyptus grandis HOM05D006988 ORTHO05D008731 1.4e-55 220.3 160 73.1
SMO367G0814 Selaginella moellendorffii HOM05D006988 ORTHO05D008731 3.1e-55 219.2 175 58.9
SMO367G0459 Selaginella moellendorffii HOM05D006988 ORTHO05D008731 1.5e-54 216.9 175 58.3
Ah.16g110010 Amaranthus hybridus HOM05D006988 ORTHO05D008731 7.2e-52 208.0 173 60.1
Sc23g0003890 Simmondsia chinensis HOM05D006988 ORTHO05D008731 3.6e-51 205.7 166 62.0
MSTRG.20719 Avicennia marina HOM05D006988 ORTHO05D008731 2.5e-49 199.5 158 67.1
Psat3g157120 Pisum sativum HOM05D006988 ORTHO05D008731 7.7e-46 188.0 139 71.2
vmacro13459 Vaccinium macrocarpon HOM05D006988 ORTHO05D008731 2.7e-43 179.5 142 69.0
Thhalv10028565m.g Eutrema salsugineum HOM05D000447 ORTHO05D000315 1.7e-40 170.2 133 66.9
BcaC03g13893 Brassica carinata HOM05D006988 ORTHO05D008731 3.1e-39 166.0 215 47.9
C03p91270 Brassica napus HOM05D006988 ORTHO05D008731 7.0e-39 164.9 125 66.4
SMO367G0117 Selaginella moellendorffii HOM05D012767 ORTHO05D008731 6.5e-37 158.3 182 47.8
Cre14.g618050 Chlamydomonas reinhardtii HOM05D006988 ORTHO05D008731 1.8e-34 150.2 174 48.3
AagrBONN_evm.TU.Sc2ySwM_362.1347 Anthoceros agrestis HOM05D006988 ORTHO05D008731 2.6e-33 146.4 122 60.7
PRCOL_00005443 Prasinoderma coloniale HOM05D006988 ORTHO05D008731 4.4e-33 145.6 235 40.4
C02p10970 Brassica napus HOM05D006988 ORTHO05D008731 3.1e-31 139.4 87 74.7
BolC2t07167H Brassica oleracea HOM05D006988 ORTHO05D008731 9.1e-31 137.9 87 73.6
BcaC01g03084 Brassica carinata HOM05D006988 ORTHO05D008731 8.5e-29 131.3 172 43.0
Lalb_Chr19g0127481 Lupinus albus HOM05D006988 ORTHO05D008731 8.3e-24 114.8 55 89.1
MCO12G266 Micromonas commoda HOM05D006988 ORTHO05D008731 2.4e-23 113.2 178 42.7
unitig_26.g9723 Utricularia gibba HOM05D000502 ORTHO05D000356 2.5e-20 103.2 103 54.4
Dinv19490 Davidia involucrata HOM05D006985 ORTHO05D008749 2.7e-19 99.8 92 60.9
A09p00790 Brassica napus HOM05D006988 ORTHO05D008731 6.8e-18 95.1 71 67.6
Actinidia12175 Actinidia chinensis HOM05D006988 ORTHO05D008731 2.0e-17 93.6 82 56.1
BolC3t17906H Brassica oleracea HOM05D001199 ORTHO05D001013 6.6e-13 78.6 62 61.3
C03p56160 Brassica napus HOM05D001199 ORTHO05D001013 1.2e-11 74.3 64 59.4
Actinidia22773 Actinidia chinensis HOM05D006988 ORTHO05D008731 4.0e-10 69.3 34 88.2
Dinv13821 Davidia involucrata HOM05D006988 ORTHO05D008731 1.2e-09 67.8 69 56.5
Lalb_Chr19g0127491 Lupinus albus HOM05D006988 ORTHO05D008731 7.5e-09 65.1 67 53.7
RcHm_v2.0_Chr1g0348661 Rosa chinensis HOM05D006988 ORTHO05D008731 1.3e-08 64.3 33 87.9
Haze_25195 Corylus avellana HOM05D005663 ORTHO05D007258 2.2e-08 63.5 218 27.5
GSVIVG01026586001 Vitis vinifera HOM05D005663 ORTHO05D007258 6.4e-08 62.0 190 26.3
Gorai.002G151300 Gossypium raimondii HOM05D005663 ORTHO05D007258 5.4e-07 58.9 191 24.1
Gohir.A06G149400 Gossypium hirsutum HOM05D005663 ORTHO05D007258 9.2e-07 58.2 191 24.6
vmacro18658 Vaccinium macrocarpon HOM05D005663 ORTHO05D007258 9.2e-07 58.2 143 27.3
HPP92_016149 Vanilla planifolia HOM05D005663 ORTHO05D007258 9.2e-07 58.2 135 28.1
Haze_25187 Corylus avellana HOM05D005663 ORTHO05D007258 1.6e-06 57.4 173 27.2
Gorai.010G181700 Gossypium raimondii HOM05D005663 ORTHO05D007258 1.6e-06 57.4 191 24.6
SEGI_39378 Sequoiadendron giganteum HOM05D005663 ORTHO05D007258 1.6e-06 57.4 187 27.3
QL06p051868 Quercus lobata HOM05D005663 ORTHO05D007258 2.0e-06 57.0 206 25.7
Actinidia06667 Actinidia chinensis HOM05D005663 ORTHO05D007258 7.8e-06 55.1 140 26.4
Cre03.g188650 Chlamydomonas reinhardtii HOM05D003483 ORTHO05D004101 7.8e-06 55.1 183 26.8
Medtr8g092680 Medicago truncatula HOM05D005663 ORTHO05D007258 7.8e-06 55.1 136 27.9


User provided reference genes

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