Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G0714 Cannabis sativa HOM05D003826 ORTHO05D004479 5.2e-90 334.3 167 100.0
Manes.12G126200 Manihot esculenta HOM05D003826 ORTHO05D004479 9.6e-60 233.8 164 70.1
Cpa.g.sc55.25 Carica papaya HOM05D003826 ORTHO05D004479 1.6e-59 233.0 165 67.9
Prupe.6G201600 Prunus persica HOM05D003826 ORTHO05D004479 1.6e-59 233.0 165 68.5
arahy.Tifrunner.gnm1.ann1.JLXM4S Arachis hypogaea HOM05D003826 ORTHO05D004479 4.8e-59 231.5 167 68.3
arahy.Tifrunner.gnm1.ann1.QQ8XF2 Arachis hypogaea HOM05D003826 ORTHO05D004479 4.8e-59 231.5 167 68.3
Thecc.01G090400 Theobroma cacao HOM05D003826 ORTHO05D004479 1.1e-58 230.3 165 68.5
Duzib147G0892 Durio zibethinus HOM05D003826 ORTHO05D004479 9.0e-58 227.3 165 67.3
Lalb_Chr05g0216361 Lupinus albus HOM05D003826 ORTHO05D004479 1.7e-56 223.0 167 65.9
Atru.chr6.1261 Acer truncatum HOM05D003826 ORTHO05D004479 8.4e-56 220.7 163 66.3
FvH4_1g19640 Fragaria vesca HOM05D003826 ORTHO05D004479 2.4e-55 219.2 167 67.7
FAN19G1458 Fragaria x ananassa HOM05D003826 ORTHO05D004479 2.4e-55 219.2 167 67.7
Atru.chr6.1269 Acer truncatum HOM05D003826 ORTHO05D004479 3.2e-55 218.8 163 65.6
Cfa006882 Carpinus fangiana HOM05D003826 ORTHO05D004479 3.2e-55 218.8 166 63.9
Hma1.2p1_0908F.1_g235485 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 3.2e-55 218.8 166 64.5
Rhsim05G0101900 Rhododendron simsii HOM05D003826 ORTHO05D004479 3.2e-55 218.8 166 66.3
FAN23G0964 Fragaria x ananassa HOM05D003826 ORTHO05D004479 4.2e-55 218.4 167 67.1
MD01G1039300 Malus domestica HOM05D003826 ORTHO05D004479 4.2e-55 218.4 165 64.8
FAN26G3235 Fragaria x ananassa HOM05D003826 ORTHO05D004479 9.3e-55 217.2 167 67.1
Nn1g05569 Nelumbo nucifera HOM05D003826 ORTHO05D004479 9.3e-55 217.2 165 64.8
Dinv13602 Davidia involucrata HOM05D003826 ORTHO05D004479 1.2e-54 216.9 165 64.8
Ah.03g139970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 2.1e-54 216.1 164 64.6
Atru.chr3.1247 Acer truncatum HOM05D003826 ORTHO05D004479 3.5e-54 215.3 162 64.2
TWI59G0852 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 3.5e-54 215.3 163 65.0
Manes.07G038200 Manihot esculenta HOM05D003826 ORTHO05D004479 6.0e-54 214.5 163 63.8
Haze_03870 Corylus avellana HOM05D003826 ORTHO05D004479 7.9e-54 214.2 166 62.7
PGR042G0672 Punica granatum HOM05D003826 ORTHO05D004479 7.9e-54 214.2 165 63.0
Thecc.02G129300 Theobroma cacao HOM05D003826 ORTHO05D004479 7.9e-54 214.2 163 63.8
vmacro19957 Vaccinium macrocarpon HOM05D003826 ORTHO05D004479 7.9e-54 214.2 166 64.5
Aa31LG8G12520 Aethionema arabicum HOM05D003826 ORTHO05D004479 1.0e-53 213.8 163 63.8
arahy.Tifrunner.gnm1.ann1.AL483W Arachis hypogaea HOM05D003826 ORTHO05D004479 1.0e-53 213.8 163 64.4
Ciclev10029337m.g Citrus clementina HOM05D003826 ORTHO05D004479 1.0e-53 213.8 163 65.0
Manes.10G098600 Manihot esculenta HOM05D003826 ORTHO05D004479 1.0e-53 213.8 160 64.4
TAR628G1674 Trochodendron aralioides HOM05D003826 ORTHO05D004479 1.0e-53 213.8 166 63.9
Gorai.013G055500 Gossypium raimondii HOM05D003826 ORTHO05D004479 1.3e-53 213.4 163 63.8
arahy.Tifrunner.gnm1.ann1.8F9AHD Arachis hypogaea HOM05D003826 ORTHO05D004479 1.8e-53 213.0 163 63.8
Actinidia28031 Actinidia chinensis HOM05D003826 ORTHO05D004479 2.3e-53 212.6 166 63.3
PGR102G1409 Punica granatum HOM05D003826 ORTHO05D004479 2.3e-53 212.6 166 63.9
TWI14G0912 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 2.3e-53 212.6 160 65.0
Migut.B00552 Erythranthe guttata HOM05D003826 ORTHO05D004479 3.0e-53 212.2 163 63.8
Carub.0003s2836 Capsella rubella HOM05D003826 ORTHO05D004479 3.9e-53 211.8 160 64.4
Sabra17G0029800 Salix brachista HOM05D003826 ORTHO05D004479 3.9e-53 211.8 165 61.8
Sp3g27460 Schrenkiella parvula HOM05D003826 ORTHO05D004479 3.9e-53 211.8 160 63.1
Cpa.g.sc20.1 Carica papaya HOM05D003826 ORTHO05D004479 5.1e-53 211.5 160 63.8
PGSC0003DMG400033580 Solanum tuberosum HOM05D003826 ORTHO05D004479 5.1e-53 211.5 165 61.2
Eucgr.G00988 Eucalyptus grandis HOM05D003826 ORTHO05D004479 6.7e-53 211.1 163 62.6
Thhalv10022868m.g Eutrema salsugineum HOM05D003826 ORTHO05D004479 6.7e-53 211.1 160 63.8
Gohir.A13G050900 Gossypium hirsutum HOM05D003826 ORTHO05D004479 6.7e-53 211.1 163 63.2
Hma1.2p1_1058F.1_g252870 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 6.7e-53 211.1 167 62.9
Nitab4.5_0008998g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 6.7e-53 211.1 165 61.2
PSO541G0595 Papaver somniferum HOM05D003826 ORTHO05D004479 6.7e-53 211.1 166 60.8
PGSC0003DMG400031403 Solanum tuberosum HOM05D003826 ORTHO05D004479 6.7e-53 211.1 165 60.6
CSS0016886 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 8.7e-53 210.7 166 63.9
CSS0036052 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 8.7e-53 210.7 166 63.9
Nitab4.5_0011038g0020 Nicotiana tabacum HOM05D003826 ORTHO05D004479 8.7e-53 210.7 165 61.2
Solyc01g105970.3 Solanum lycopersicum HOM05D003826 ORTHO05D004479 8.7e-53 210.7 165 61.2
Sopen01g048350 Solanum pennellii HOM05D003826 ORTHO05D004479 8.7e-53 210.7 165 61.2
Dinv24149 Davidia involucrata HOM05D003826 ORTHO05D004479 1.1e-52 210.3 159 65.4
FAN28G0881 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.5e-52 209.9 181 63.0
Sed0006788 Sechium edule HOM05D003826 ORTHO05D004479 1.5e-52 209.9 163 63.2
BcaB02g11486 Brassica carinata HOM05D003826 ORTHO05D004479 2.5e-52 209.1 160 62.5
MBI16_g12461_MAGBIO Magnolia biondii HOM05D003826 ORTHO05D004479 2.5e-52 209.1 165 61.8
SEGI_37389 Sequoiadendron giganteum HOM05D003826 ORTHO05D004479 2.5e-52 209.1 162 63.6
CAN.G997.2 Capsicum annuum HOM05D003826 ORTHO05D004479 3.3e-52 208.8 165 59.4
Potri.017G043900 Populus trichocarpa HOM05D003826 ORTHO05D004479 3.3e-52 208.8 165 61.2
RcHm_v2.0_Chr2g0111211 Rosa chinensis HOM05D003826 ORTHO05D004479 3.3e-52 208.8 166 64.5
TAR376G0575 Trochodendron aralioides HOM05D003826 ORTHO05D004479 3.3e-52 208.8 166 62.7
Duzib052G0856 Durio zibethinus HOM05D003826 ORTHO05D004479 4.3e-52 208.4 160 61.9
Potri.017G043700 Populus trichocarpa HOM05D003826 ORTHO05D004479 4.3e-52 208.4 165 60.6
CiPaw.05G029600 Carya illinoinensis HOM05D003826 ORTHO05D004479 5.6e-52 208.0 163 62.6
Cc02_g20920 Coffea canephora HOM05D003826 ORTHO05D004479 5.6e-52 208.0 163 61.3
GSVIVG01015652001 Vitis vinifera HOM05D003826 ORTHO05D004479 5.6e-52 208.0 164 62.8
Medtr2g009600 Medicago truncatula HOM05D003826 ORTHO05D004479 7.4e-52 207.6 164 62.2
TPR.G9500 Trifolium pratense HOM05D003826 ORTHO05D004479 7.4e-52 207.6 165 62.4
BolC9t54449H Brassica oleracea HOM05D003826 ORTHO05D004479 9.6e-52 207.2 163 61.3
CARHR104200 Cardamine hirsuta HOM05D003826 ORTHO05D004479 9.6e-52 207.2 162 60.5
CsaV3_7G006880 Cucumis sativus L. HOM05D003826 ORTHO05D004479 9.6e-52 207.2 160 62.5
FvH4_2g11710 Fragaria vesca HOM05D003826 ORTHO05D004479 1.3e-51 206.8 163 62.0
FAN24G2578 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.3e-51 206.8 163 62.0
Nitab4.5_0002017g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 1.3e-51 206.8 165 60.6
RcHm_v2.0_Chr6g0271011 Rosa chinensis HOM05D003826 ORTHO05D004479 1.3e-51 206.8 163 62.6
AL3G45800 Arabidopsis lyrata HOM05D003826 ORTHO05D004479 1.6e-51 206.5 160 61.2
Peaxi162Scf00003g03230 Petunia axillaris HOM05D003826 ORTHO05D004479 1.6e-51 206.5 165 61.8
Sc18g0007060 Simmondsia chinensis HOM05D003826 ORTHO05D004479 1.6e-51 206.5 163 61.3
BcaC04g22775 Brassica carinata HOM05D003826 ORTHO05D004479 2.1e-51 206.1 163 60.7
C09p15420 Brassica napus HOM05D003826 ORTHO05D004479 2.1e-51 206.1 163 60.7
MD05G1047400 Malus domestica HOM05D003826 ORTHO05D004479 2.1e-51 206.1 163 61.3
Aqoxy6G00874 Aquilegia oxysepala HOM05D003826 ORTHO05D004479 2.8e-51 205.7 165 60.0
CANSAT54G1150 Cannabis sativa HOM05D003826 ORTHO05D004479 2.8e-51 205.7 163 62.0
ClCG09G016080 Citrullus lanatus HOM05D003826 ORTHO05D004479 2.8e-51 205.7 160 61.9
Prupe.8G069800 Prunus persica HOM05D003826 ORTHO05D004479 2.8e-51 205.7 163 62.6
MSTRG.27816 Avicennia marina HOM05D003826 ORTHO05D004479 3.7e-51 205.3 163 60.1
A09p13020 Brassica napus HOM05D003826 ORTHO05D004479 4.8e-51 204.9 163 60.1
BraA09t36947Z Brassica rapa HOM05D003826 ORTHO05D004479 4.8e-51 204.9 163 60.1
CiPaw.07G047500 Carya illinoinensis HOM05D003826 ORTHO05D004479 4.8e-51 204.9 166 60.2
DCAR_003601 Daucus carota HOM05D003826 ORTHO05D004479 4.8e-51 204.9 164 64.0
QL11p025207 Quercus lobata HOM05D003826 ORTHO05D004479 6.2e-51 204.5 163 61.3
VMungo0540G1729 Vigna mungo HOM05D003826 ORTHO05D004479 6.2e-51 204.5 159 62.3
CDE04G3107 Ceratophyllum demersum HOM05D003826 ORTHO05D004479 1.1e-50 203.8 159 62.3
Cc07_g14100 Coffea canephora HOM05D003826 ORTHO05D004479 1.1e-50 203.8 165 60.0
Oeu042406.1 Olea europaea HOM05D003826 ORTHO05D004479 1.1e-50 203.8 163 61.3
Lj5A230G39 Lonicera japonica HOM05D003826 ORTHO05D004479 1.4e-50 203.4 146 66.4
CSS0050337 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 1.8e-50 203.0 166 60.8
Migut.N01096 Erythranthe guttata HOM05D003826 ORTHO05D004479 1.8e-50 203.0 163 59.5
Psat1g214120 Pisum sativum HOM05D003826 ORTHO05D004479 2.4e-50 202.6 164 61.0
Sed0018824 Sechium edule HOM05D003826 ORTHO05D004479 2.4e-50 202.6 163 60.7
SMO271G0099 Selaginella moellendorffii HOM05D003826 ORTHO05D004479 2.4e-50 202.6 160 60.0
EL10Ac9g22073 Beta vulgaris HOM05D003826 ORTHO05D004479 3.1e-50 202.2 164 58.5
Cfa005734 Carpinus fangiana HOM05D003826 ORTHO05D004479 4.0e-50 201.8 163 60.7
AagrBONN_evm.TU.Sc2ySwM_362.1195 Anthoceros agrestis HOM05D003826 ORTHO05D004479 5.3e-50 201.4 158 60.1
Haze_10523 Corylus avellana HOM05D003826 ORTHO05D004479 5.3e-50 201.4 163 60.7
THA.LOC104807183 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 6.9e-50 201.1 160 60.0
MELO3C018606.2 Cucumis melo HOM05D003826 ORTHO05D004479 9.0e-50 200.7 165 61.8
MSTRG.20281 Avicennia marina HOM05D003826 ORTHO05D004479 1.5e-49 199.9 160 58.8
Glyma.13G256700 Glycine max HOM05D003826 ORTHO05D004479 1.5e-49 199.9 159 61.0
Ca_00163_v3 Cicer arietinum L. HOM05D003826 ORTHO05D004479 2.0e-49 199.5 164 62.8
Os03g0737400 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 2.0e-49 199.5 162 58.6
Medtr4g093560 Medicago truncatula HOM05D003826 ORTHO05D004479 2.6e-49 199.1 163 57.1
Lj6g0003535 Lotus japonicus HOM05D003826 ORTHO05D004479 3.4e-49 198.7 159 61.0
Phvul.006G202000 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 4.5e-49 198.4 159 61.6
HanXRQChr08g0227191 Helianthus annuus HOM05D003826 ORTHO05D004479 1.0e-48 197.2 163 58.3
Zm00001eb215290 Zea mays HOM05D003826 ORTHO05D004479 1.0e-48 197.2 162 59.3
Lalb_Chr16g0382941 Lupinus albus HOM05D003826 ORTHO05D004479 1.3e-48 196.8 163 57.1
Psat7g101120 Pisum sativum HOM05D003826 ORTHO05D004479 1.3e-48 196.8 163 57.1
ECA236G1467 Erigeron canadensis HOM05D003826 ORTHO05D000778 2.2e-48 196.1 163 57.7
Lj4g0024713 Lotus japonicus HOM05D003826 ORTHO05D004479 6.5e-48 194.5 164 57.9
unitig_46.g18833 Utricularia gibba HOM05D003826 ORTHO05D004479 8.4e-48 194.1 162 57.4
Phvul.002G212900 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 4.2e-47 191.8 163 57.1
AUR62003663 Chenopodium quinoa HOM05D003826 ORTHO05D004479 5.5e-47 191.4 165 57.6
Glyma.07G181900 Glycine max HOM05D003826 ORTHO05D004479 1.6e-46 189.9 163 56.4
unitig_37.g12793 Utricularia gibba HOM05D003826 ORTHO05D004479 1.0e-45 187.2 163 53.4
HPP92_016899 Vanilla planifolia HOM05D003826 ORTHO05D004479 1.3e-45 186.8 163 54.6
Lsat_1_v5_gn_7_82781 Lactuca sativa HOM05D003826 ORTHO05D004479 1.8e-45 186.4 163 58.9
TPR.G2887 Trifolium pratense HOM05D003826 ORTHO05D004479 2.3e-45 186.0 163 53.4
arahy.Tifrunner.gnm1.ann1.8NDV1J Arachis hypogaea HOM05D003826 ORTHO05D004479 1.5e-44 183.3 163 53.4
Gorai.008G017400 Gossypium raimondii HOM05D003826 ORTHO05D004479 1.5e-44 183.3 160 56.9
Pp3c1_28610 Physcomitrium patens HOM05D003826 ORTHO05D004479 1.9e-44 183.0 161 55.3
Gohir.D12G017100 Gossypium hirsutum HOM05D003826 ORTHO05D004479 7.4e-44 181.0 163 55.8
Lj5A230G40 Lonicera japonica HOM05D003826 ORTHO05D004479 9.7e-44 180.6 162 56.2
arahy.Tifrunner.gnm1.ann1.MWC9N2 Arachis hypogaea HOM05D001561 ORTHO05D001715 1.3e-43 180.3 163 53.4
Os03g0737300 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 2.2e-43 179.5 166 54.8
Mapoly0042s0019 Marchantia polymorpha HOM05D003826 ORTHO05D004479 8.2e-43 177.6 155 55.5
COL.COLO4_32389 Corchorus olitorius HOM05D003826 ORTHO05D004479 4.1e-42 175.3 163 54.0
Mapoly0032s0046 Marchantia polymorpha HOM05D003826 ORTHO05D004479 1.5e-41 173.3 153 54.2
Os11g0434000 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 2.9e-40 169.1 164 51.8
AT2G14110 Arabidopsis thaliana HOM05D003826 ORTHO05D004479 8.5e-40 167.5 132 58.3
Peaxi162Scf00299g00634 Petunia axillaris HOM05D003826 ORTHO05D004479 8.5e-40 167.5 165 52.7
SGA_v2.0_scaffold83G26375 Striga asiatica HOM05D003826 ORTHO05D004479 3.2e-39 165.6 135 59.3
Hund16529 Selenicereus undatus HOM05D003826 ORTHO05D004479 4.2e-39 165.2 127 63.8
CBR_g26273 Chara braunii HOM05D003826 ORTHO05D004479 3.9e-37 158.7 152 50.0
Nitab4.5_0002095g0060 Nicotiana tabacum HOM05D003826 ORTHO05D004479 3.9e-37 158.7 129 57.4
Hund00378 Selenicereus undatus HOM05D003826 ORTHO05D004479 3.3e-36 155.6 119 63.0
GSVIVG01015647001 Vitis vinifera HOM05D003826 ORTHO05D004479 3.3e-36 155.6 119 64.7
ATR0767G074 Amborella trichopoda HOM05D003826 ORTHO05D004479 1.4e-34 150.2 119 61.3
SalBow6G1284 Salvia bowleyana HOM05D003826 ORTHO05D004479 2.6e-33 146.0 131 55.7
ATR0767G082 Amborella trichopoda HOM05D003826 ORTHO05D004479 1.7e-32 143.3 119 57.1
AUR62017972 Chenopodium quinoa HOM05D003826 ORTHO05D004479 6.5e-32 141.4 99 68.7
RhsimUnG0154900 Rhododendron simsii HOM05D003826 ORTHO05D004479 1.4e-31 140.2 164 49.4
Glyma.15G058200 Glycine max HOM05D003826 ORTHO05D004479 5.5e-31 138.3 153 49.7
Mapoly0010s0051 Marchantia polymorpha HOM05D003826 ORTHO05D004479 5.5e-31 138.3 156 46.2
SalBow8G4107 Salvia bowleyana HOM05D003826 ORTHO05D004479 3.0e-29 132.5 163 46.0
Ah.01g023970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 7.4e-28 127.9 165 44.2
AUR62027111 Chenopodium quinoa HOM05D003826 ORTHO05D004479 1.7e-27 126.7 165 43.6
AUR62012887 Chenopodium quinoa HOM05D003826 ORTHO05D004479 1.1e-26 124.0 165 43.0
GSVIVG01015646001 Vitis vinifera HOM05D003826 ORTHO05D004479 1.4e-23 113.6 116 50.9
Ciclev10026755m.g Citrus clementina HOM05D003826 ORTHO05D004479 3.2e-23 112.5 93 60.2
Nn5g29884 Nelumbo nucifera HOM05D003826 ORTHO05D004479 3.2e-23 112.5 89 60.7
Lalb_Chr18g0060401 Lupinus albus HOM05D003826 ORTHO05D004479 2.7e-22 109.4 163 41.1
MD10G1054300 Malus domestica HOM05D003826 ORTHO05D004479 5.2e-21 105.1 73 64.4
CANSAT01G2972 Cannabis sativa HOM05D000003 ORTHO05D000004 5.7e-20 101.7 46 97.8
VMungo0251G2759 Vigna mungo HOM05D003826 ORTHO05D004479 7.0e-18 94.7 95 47.4
Solyc10g047310.1 Solanum lycopersicum HOM05D003826 ORTHO05D004479 1.3e-16 90.5 95 44.2
Cre09.g401738 Chlamydomonas reinhardtii HOM05D003826 ORTHO05D004479 5.2e-13 78.6 174 32.2
MCO11G520 Micromonas commoda HOM05D003826 ORTHO05D004479 2.8e-11 72.8 178 30.9
MCO09G863 Micromonas commoda HOM05D003826 ORTHO05D004479 8.2e-11 71.2 183 30.6
Gohir.D13G049650 Gossypium hirsutum HOM05D003826 ORTHO05D004479 1.1e-10 70.9 42 81.0
Mapoly0042s0017 Marchantia polymorpha HOM05D003826 ORTHO05D004479 9.1e-10 67.8 71 46.5
THA.LOC104824951 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 2.9e-08 62.8 109 34.9
Gorai.002G159200 Gossypium raimondii HOM05D028424 ORTHO05D219023 2.1e-06 56.6 31 77.4
Glyma.08G067900 Glycine max HOM05D003826 ORTHO05D004479 4.7e-06 55.5 81 40.7


User provided reference genes

Program Settings