Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G0699 Cannabis sativa HOM05D005577 ORTHO05D006941 1.6e-263 912.1 454 100.0
MD13G1121900 Malus domestica HOM05D005577 ORTHO05D006941 3.5e-213 745.0 452 81.2
GSVIVG01029087001 Vitis vinifera HOM05D005577 ORTHO05D006941 1.0e-212 743.4 448 81.5
Manes.13G009300 Manihot esculenta HOM05D005577 ORTHO05D006941 1.7e-212 742.7 451 80.9
Thecc.02G202700 Theobroma cacao HOM05D005577 ORTHO05D006941 1.7e-212 742.7 453 81.2
TAR629G1549 Trochodendron aralioides HOM05D005577 ORTHO05D006941 2.3e-212 742.3 450 81.1
Manes.12G008900 Manihot esculenta HOM05D005577 ORTHO05D006941 1.9e-211 739.2 451 80.7
Duzib248G1391 Durio zibethinus HOM05D005577 ORTHO05D006941 7.3e-211 737.3 453 81.0
Peaxi162Scf00128g01539 Petunia axillaris HOM05D005577 ORTHO05D006941 1.4e-209 733.0 452 79.9
RcHm_v2.0_Chr4g0418271 Rosa chinensis HOM05D005577 ORTHO05D006941 1.4e-209 733.0 452 80.5
Cfa009383 Carpinus fangiana HOM05D005577 ORTHO05D006941 1.8e-209 732.6 447 81.2
CiPaw.06G104800 Carya illinoinensis HOM05D005577 ORTHO05D006941 2.3e-209 732.3 447 79.6
Rhsim12G0094300 Rhododendron simsii HOM05D005577 ORTHO05D006941 4.0e-209 731.5 448 79.9
Haze_12444 Corylus avellana HOM05D005577 ORTHO05D006941 6.8e-209 730.7 475 77.5
FAN07G0551 Fragaria x ananassa HOM05D005577 ORTHO05D006941 8.9e-209 730.3 452 80.3
FAN22G0128 Fragaria x ananassa HOM05D005577 ORTHO05D006941 3.4e-208 728.4 452 80.1
Gohir.A03G117000 Gossypium hirsutum HOM05D005577 ORTHO05D006941 4.4e-208 728.0 453 79.5
CSS0033060 Camellia sinensis var. sinensis HOM05D005577 ORTHO05D006941 7.5e-208 727.2 452 80.5
FAN12G2046 Fragaria x ananassa HOM05D005577 ORTHO05D006941 1.7e-207 726.1 451 79.4
TWI36G1278 Tripterygium wilfordii HOM05D005577 ORTHO05D006941 1.7e-207 726.1 449 80.4
Ciclev10031511m.g Citrus clementina HOM05D005577 ORTHO05D006941 4.9e-207 724.5 435 81.6
Gorai.005G164500 Gossypium raimondii HOM05D005577 ORTHO05D006941 4.9e-207 724.5 453 79.5
Gohir.D02G146900 Gossypium hirsutum HOM05D005577 ORTHO05D006941 6.4e-207 724.2 453 79.5
Potri.003G169300 Populus trichocarpa HOM05D005577 ORTHO05D006941 1.4e-206 723.0 452 79.2
TWI75G1135 Tripterygium wilfordii HOM05D005577 ORTHO05D006941 2.4e-206 722.2 449 80.6
Nn3g16413 Nelumbo nucifera HOM05D005577 ORTHO05D006941 4.1e-206 721.5 452 78.5
CsaV3_6G008170 Cucumis sativus L. HOM05D005577 ORTHO05D006941 2.7e-205 718.8 453 76.8
Sopen04g017360 Solanum pennellii HOM05D005577 ORTHO05D006941 2.7e-205 718.8 452 78.1
QL03p051875 Quercus lobata HOM05D005577 ORTHO05D006941 4.6e-205 718.0 462 77.3
Sc11g0000360 Simmondsia chinensis HOM05D005577 ORTHO05D006941 4.6e-205 718.0 449 79.5
CSS0039862 Camellia sinensis var. sinensis HOM05D005577 ORTHO05D006941 1.7e-204 716.1 452 79.0
Nitab4.5_0008235g0010 Nicotiana tabacum HOM05D005577 ORTHO05D006941 6.6e-204 714.1 452 77.9
COL.COLO4_20442 Corchorus olitorius HOM05D005577 ORTHO05D006941 2.5e-203 712.2 453 78.4
Sed0021319 Sechium edule HOM05D005577 ORTHO05D006941 5.6e-203 711.1 455 76.3
Hund25478 Selenicereus undatus HOM05D005577 ORTHO05D006941 1.6e-202 709.5 449 77.5
Medtr8g097160 Medicago truncatula HOM05D005577 ORTHO05D006941 3.6e-202 708.4 442 79.2
Nitab4.5_0001010g0020 Nicotiana tabacum HOM05D005577 ORTHO05D006941 4.7e-202 708.0 447 78.1
Migut.K00987 Erythranthe guttata HOM05D005577 ORTHO05D006941 6.2e-202 707.6 457 75.3
MSTRG.487 Avicennia marina HOM05D005577 ORTHO05D006941 8.1e-202 707.2 457 75.7
Eucgr.H04616 Eucalyptus grandis HOM05D005577 ORTHO05D006941 8.1e-202 707.2 456 77.2
Glyma.05G148900 Glycine max HOM05D005577 ORTHO05D006941 8.1e-202 707.2 458 77.5
Ca_18016_v3 Cicer arietinum L. HOM05D005577 ORTHO05D006941 1.1e-201 706.8 442 79.2
DCAR_024669 Daucus carota HOM05D005577 ORTHO05D006941 4.0e-201 704.9 483 72.9
Aqoxy5G03309 Aquilegia oxysepala HOM05D005577 ORTHO05D006941 5.2e-201 704.5 434 78.8
Lj6A829T30 Lonicera japonica HOM05D005577 ORTHO05D006941 5.2e-201 704.5 476 75.4
Cc11_g17150 Coffea canephora HOM05D005577 ORTHO05D006941 2.6e-200 702.2 455 75.8
SalBow2G2693 Salvia bowleyana HOM05D005577 ORTHO05D006941 3.4e-200 701.8 450 76.4
Dinv11687 Davidia involucrata HOM05D005577 ORTHO05D006941 4.4e-200 701.4 435 79.1
Glyma.08G105600 Glycine max HOM05D005577 ORTHO05D006941 7.5e-200 700.7 458 76.4
Lalb_Chr07g0187001 Lupinus albus HOM05D005577 ORTHO05D006941 3.2e-198 695.3 442 76.7
ATR0561G025 Amborella trichopoda HOM05D005577 ORTHO05D006941 1.6e-197 693.0 451 74.3
TPR.G26572 Trifolium pratense HOM05D005577 ORTHO05D006941 1.6e-197 693.0 442 77.4
EL10Ac6g13532 Beta vulgaris HOM05D005577 ORTHO05D006941 2.1e-197 692.6 449 76.6
Lj4g0002319 Lotus japonicus HOM05D005577 ORTHO05D006941 1.0e-196 690.3 434 78.1
Prupe.1G223400 Prunus persica HOM05D005577 ORTHO05D006941 1.7e-196 689.5 452 77.7
Phvul.L003546 Phaseolus vulgaris HOM05D005577 ORTHO05D006941 3.0e-196 688.7 441 75.7
Hma1.2p1_0065F.1_g035160 Hydrangea macrophylla HOM05D005577 ORTHO05D006941 5.1e-196 688.0 450 76.0
Solyc04g045530.4 Solanum lycopersicum HOM05D005577 ORTHO05D006941 2.5e-195 685.6 431 79.1
Os07g0406800 Oryza sativa ssp. japonica HOM05D005577 ORTHO05D006941 1.6e-194 682.9 432 75.2
HPP92_020263 Vanilla planifolia HOM05D005577 ORTHO05D006941 3.6e-194 681.8 449 73.9
arahy.Tifrunner.gnm1.ann1.V9CB21 Arachis hypogaea HOM05D005577 ORTHO05D006941 1.4e-193 679.9 434 76.7
BcaB03g15345 Brassica carinata HOM05D005577 ORTHO05D006941 4.0e-193 678.3 449 71.7
arahy.Tifrunner.gnm1.ann1.HTD3J8 Arachis hypogaea HOM05D005577 ORTHO05D006941 8.9e-193 677.2 431 76.8
Oeu058914.1 Olea europaea HOM05D005577 ORTHO05D006941 3.4e-192 675.2 472 70.8
Thhalv10018528m.g Eutrema salsugineum HOM05D005577 ORTHO05D006941 4.4e-192 674.9 448 71.2
Lsat_1_v5_gn_2_63520 Lactuca sativa HOM05D005577 ORTHO05D006941 5.8e-192 674.5 449 74.4
Zm00001eb421110 Zea mays HOM05D005577 ORTHO05D006941 7.6e-192 674.1 430 74.9
AL2G25840 Arabidopsis lyrata HOM05D005577 ORTHO05D006941 1.1e-190 670.2 449 71.5
Sp5g22260 Schrenkiella parvula HOM05D005577 ORTHO05D006941 1.4e-190 669.8 449 71.0
CARHR059800 Cardamine hirsuta HOM05D005577 ORTHO05D006941 1.9e-190 669.5 449 71.7
THA.LOC104807138 Tarenaya hassleriana HOM05D005577 ORTHO05D006941 3.2e-190 668.7 447 71.8
ECA233G0246 Erigeron canadensis HOM05D005577 ORTHO05D006941 4.1e-190 668.3 440 73.6
PSO017G5787 Papaver somniferum HOM05D005577 ORTHO05D006941 7.1e-190 667.5 447 72.9
Ah.03g135990 Amaranthus hybridus HOM05D005577 ORTHO05D006941 2.7e-189 665.6 449 74.6
A02p14150 Brassica napus HOM05D005577 ORTHO05D006941 2.7e-189 665.6 449 70.8
HanXRQChr12g0354651 Helianthus annuus HOM05D005577 ORTHO05D006941 3.5e-189 665.2 454 72.7
BraA07t30887Z Brassica rapa HOM05D005577 ORTHO05D006941 6.0e-189 664.5 467 69.0
C02p22860 Brassica napus HOM05D005577 ORTHO05D006941 1.0e-188 663.7 449 70.4
Carub.0002s1360 Capsella rubella HOM05D005577 ORTHO05D006941 3.9e-188 661.8 451 70.5
AT1G67320 Arabidopsis thaliana HOM05D005577 ORTHO05D006941 1.5e-187 659.8 451 71.2
HanXRQChr12g0357271 Helianthus annuus HOM05D005577 ORTHO05D006941 2.5e-187 659.1 454 72.2
A07p32630 Brassica napus HOM05D005577 ORTHO05D006941 1.2e-186 656.8 461 69.2
THA.LOC104825491 Tarenaya hassleriana HOM05D005577 ORTHO05D006941 1.2e-186 656.8 447 71.1
vmacro17973 Vaccinium macrocarpon HOM05D005577 ORTHO05D006941 3.6e-186 655.2 502 68.1
CDE05G3041 Ceratophyllum demersum HOM05D005577 ORTHO05D006941 1.4e-185 653.3 438 71.9
BolC2t08435H Brassica oleracea HOM05D005577 ORTHO05D006941 1.8e-185 652.9 469 67.4
ClCG06G002100 Citrullus lanatus HOM05D005577 ORTHO05D006941 2.4e-185 652.5 448 72.1
Sabra03G0124100 Salix brachista HOM05D005577 ORTHO05D006941 9.0e-185 650.6 481 70.1
BraA02t06478Z Brassica rapa HOM05D005577 ORTHO05D006941 1.2e-184 650.2 478 66.3
MELO3C022319.2 Cucumis melo HOM05D005577 ORTHO05D006941 1.7e-183 646.4 413 77.0
CAN.G97.33 Capsicum annuum HOM05D005577 ORTHO05D006941 8.4e-183 644.0 458 71.4
Actinidia09628 Actinidia chinensis HOM05D005577 ORTHO05D006941 1.0e-180 637.1 400 79.2
SGA_v2.0_scaffold114G31915 Striga asiatica HOM05D005577 ORTHO05D006941 1.3e-180 636.7 464 69.0
SEGI_29210 Sequoiadendron giganteum HOM05D005577 ORTHO05D006941 6.6e-180 634.4 430 70.0
unitig_699.g19962 Utricularia gibba HOM05D005577 ORTHO05D006941 1.5e-176 623.2 472 66.1
QL02p017501 Quercus lobata HOM05D005577 ORTHO05D006941 2.4e-174 615.9 412 74.8
Zm00001eb407100 Zea mays HOM05D005577 ORTHO05D006941 9.3e-174 614.0 389 75.1
FvH4_4g14550 Fragaria vesca HOM05D005577 ORTHO05D006941 2.3e-172 609.4 379 80.2
BcaC03g14832 Brassica carinata HOM05D005577 ORTHO05D006941 8.1e-170 600.9 413 69.7
Aa31LG2G15630 Aethionema arabicum HOM05D005577 ORTHO05D006941 2.2e-167 592.8 453 65.1
Cpa.g.sc43.82 Carica papaya HOM05D005577 ORTHO05D006941 1.1e-166 590.5 447 68.0
AUR62028904 Chenopodium quinoa HOM05D005577 ORTHO05D006941 2.5e-163 579.3 466 64.4
AUR62005646 Chenopodium quinoa HOM05D005577 ORTHO05D006941 2.8e-162 575.9 449 65.5
Mapoly0051s0085 Marchantia polymorpha HOM05D005577 ORTHO05D006941 3.2e-158 562.4 435 63.2
AagrBONN_evm.TU.Sc2ySwM_362.1325 Anthoceros agrestis HOM05D005577 ORTHO05D006941 4.6e-157 558.5 427 63.7
CBR_g45479 Chara braunii HOM05D005577 ORTHO05D006941 3.1e-153 545.8 431 60.3
Hma1.2p1_0065F.1_g035170 Hydrangea macrophylla HOM05D005577 ORTHO05D006941 4.5e-152 542.0 322 81.1
Pp3c17_16180 Physcomitrium patens HOM05D005577 ORTHO05D006941 1.2e-149 533.9 436 58.9
SMO340G0130 Selaginella moellendorffii HOM05D005577 ORTHO05D006941 3.9e-148 528.9 427 60.2
Psat7g076760 Pisum sativum HOM05D005577 ORTHO05D006941 5.2e-132 475.3 277 81.2
BcaB05g24262 Brassica carinata HOM05D005577 ORTHO05D006941 4.5e-128 462.2 455 56.0
MCO02G430 Micromonas commoda HOM05D005577 ORTHO05D006941 3.6e-117 426.0 434 47.0
TAR371G1028 Trochodendron aralioides HOM05D005577 ORTHO05D006941 1.5e-115 420.6 447 54.6
MD09G1083700 Malus domestica HOM05D005577 ORTHO05D006941 8.9e-108 394.8 315 65.7
PRCOL_00003669 Prasinoderma coloniale HOM05D005577 ORTHO05D006941 7.5e-107 391.7 424 47.9
QL03p057485 Quercus lobata HOM05D005577 ORTHO05D006941 7.8e-96 355.1 371 54.4
Cre06.g293000 Chlamydomonas reinhardtii HOM05D005577 ORTHO05D006941 2.7e-88 330.1 480 38.8
Aqoxy7G01339 Aquilegia oxysepala HOM05D005577 ORTHO05D006941 1.3e-87 327.8 181 85.1
MD16G1122200 Malus domestica HOM05D005577 ORTHO05D006941 2.0e-59 234.2 337 43.9
RcHm_v2.0_Chr4g0417261 Rosa chinensis HOM05D005577 ORTHO05D006941 3.5e-56 223.4 373 40.2
Atru.chr11.2352 Acer truncatum HOM05D005577 ORTHO05D006941 6.0e-56 222.6 108 93.5
Psat7g076800 Pisum sativum HOM05D005577 ORTHO05D006941 6.0e-56 222.6 166 71.1
Atru.chr11.2354 Acer truncatum HOM05D005577 ORTHO05D006941 1.3e-42 178.3 124 74.2
Atru.chr11.2353 Acer truncatum HOM05D005577 ORTHO05D006941 5.5e-41 172.9 124 75.0
Dinv17584 Davidia involucrata HOM05D005577 ORTHO05D006941 2.3e-39 167.5 391 33.2
RcHm_v2.0_Chr4g0417231 Rosa chinensis HOM05D005577 ORTHO05D006941 4.1e-36 156.8 137 59.9
SHI17980 Sapria himalayana HOM05D005577 ORTHO05D006941 3.9e-31 140.2 86 69.8
Lsat_1_v5_gn_0_16180 Lactuca sativa HOM05D005577 ORTHO05D006941 8.2e-29 132.5 121 56.2
SHI17983 Sapria himalayana HOM05D005577 ORTHO05D006941 2.9e-26 124.0 100 61.0
Potri.017G053801 Populus trichocarpa HOM05D005577 ORTHO05D006941 3.9e-23 113.6 83 67.5
A10p10750 Brassica napus HOM05D005577 ORTHO05D006941 4.4e-22 110.2 67 70.1
MD16G1122100 Malus domestica HOM05D005577 ORTHO05D006941 1.4e-20 105.1 76 65.8
MCO16G135 Micromonas commoda HOM05D005577 ORTHO05D267611 4.1e-20 103.6 192 31.2
RcHm_v2.0_Chr4g0417241 Rosa chinensis HOM05D005577 ORTHO05D006941 9.1e-20 102.4 70 70.0
QL10p065845 Quercus lobata HOM05D000176 ORTHO05D000106 8.5e-18 95.9 104 52.9
Duzib268G0110 Durio zibethinus HOM05D005577 ORTHO05D006941 1.2e-16 92.0 101 55.4
SHI17982 Sapria himalayana HOM05D005577 ORTHO05D006941 1.4e-15 88.6 62 72.6
SHI17981 Sapria himalayana HOM05D005577 ORTHO05D006941 2.6e-14 84.3 55 76.4


User provided reference genes

Program Settings