Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G0675 Cannabis sativa HOM05D004306 ORTHO05D005055 7.2e-275 949.9 455 100.0
MD15G1294800 Malus domestica HOM05D004306 ORTHO05D005055 6.1e-250 867.1 452 89.2
FvH4_1g17390 Fragaria vesca HOM05D004306 ORTHO05D005055 9.7e-248 859.8 451 89.4
HanXRQChr14g0449471 Helianthus annuus HOM05D004306 ORTHO05D005055 5.3e-246 854.0 453 87.6
Actinidia11991 Actinidia chinensis HOM05D004306 ORTHO05D005055 5.9e-245 850.5 452 86.7
TWI09G0703 Tripterygium wilfordii HOM05D004306 ORTHO05D005055 5.9e-245 850.5 452 86.9
CiPaw.02G003700 Carya illinoinensis HOM05D004306 ORTHO05D005055 1.3e-244 849.4 452 86.9
ECA238G2426 Erigeron canadensis HOM05D004306 ORTHO05D005055 1.7e-244 849.0 447 87.5
Dinv26913 Davidia involucrata HOM05D004306 ORTHO05D005055 6.5e-244 847.0 450 86.7
Thecc.01G070200 Theobroma cacao HOM05D004306 ORTHO05D005055 9.4e-243 843.2 447 87.5
Gohir.D11G207000 Gossypium hirsutum HOM05D004306 ORTHO05D005055 3.6e-242 841.3 451 87.6
Atru.chr3.158 Acer truncatum HOM05D004306 ORTHO05D005055 4.7e-242 840.9 447 86.6
Atru.chr3.187 Acer truncatum HOM05D004306 ORTHO05D005055 4.7e-242 840.9 447 86.6
Gohir.A11G216400 Gossypium hirsutum HOM05D004306 ORTHO05D005055 2.3e-241 838.6 451 87.4
Medtr4g095660 Medicago truncatula HOM05D004306 ORTHO05D005055 5.2e-241 837.4 452 85.6
Duzib187G0102 Durio zibethinus HOM05D004306 ORTHO05D005055 2.6e-240 835.1 447 86.6
Lalb_Chr16g0389191 Lupinus albus HOM05D004306 ORTHO05D005055 5.7e-240 833.9 451 86.5
Phvul.003G236000 Phaseolus vulgaris HOM05D004306 ORTHO05D005055 5.7e-240 833.9 451 85.4
CsaV3_6G043980 Cucumis sativus L. HOM05D004306 ORTHO05D005055 1.7e-239 832.4 448 85.5
Duzib264G0002 Durio zibethinus HOM05D004306 ORTHO05D005055 2.2e-239 832.0 447 86.6
Cpa.g.sc6.39 Carica papaya HOM05D004306 ORTHO05D005055 3.7e-239 831.2 448 85.5
Rhsim10G0101200 Rhododendron simsii HOM05D004306 ORTHO05D005055 3.7e-239 831.2 452 85.6
TAR628G0028 Trochodendron aralioides HOM05D004306 ORTHO05D005055 6.3e-239 830.5 452 85.8
FAN23G0931 Fragaria x ananassa HOM05D004306 ORTHO05D005055 1.8e-238 828.9 452 86.1
CSS0001342 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 7.0e-238 827.0 447 85.9
Lj4A160T62 Lonicera japonica HOM05D004306 ORTHO05D005055 9.1e-238 826.6 451 84.9
TPR.G23896 Trifolium pratense HOM05D004306 ORTHO05D005055 2.7e-237 825.1 452 84.3
Ca_13922_v3 Cicer arietinum L. HOM05D004306 ORTHO05D005055 4.5e-237 824.3 452 84.5
Manes.12G110500 Manihot esculenta HOM05D004306 ORTHO05D005055 5.9e-237 823.9 447 85.7
Cfa004112 Carpinus fangiana HOM05D004306 ORTHO05D005055 7.7e-237 823.5 452 84.3
FAN28G1176 Fragaria x ananassa HOM05D004306 ORTHO05D005055 1.0e-236 823.2 451 85.1
FAN26G3311 Fragaria x ananassa HOM05D004306 ORTHO05D005055 1.3e-236 822.8 452 85.0
Potri.005G145400 Populus trichocarpa HOM05D004306 ORTHO05D005055 1.7e-236 822.4 450 84.9
GSVIVG01000140001 Vitis vinifera HOM05D004306 ORTHO05D005055 2.2e-236 822.0 447 85.7
Ciclev10025794m.g Citrus clementina HOM05D004306 ORTHO05D005055 2.9e-236 821.6 447 85.5
FAN19G2263 Fragaria x ananassa HOM05D004306 ORTHO05D005055 8.5e-236 820.1 462 84.2
Prupe.6G223000 Prunus persica HOM05D004306 ORTHO05D005055 8.5e-236 820.1 452 84.7
VMungo0251G0785 Vigna mungo HOM05D004306 ORTHO05D005055 8.5e-236 820.1 452 84.3
Nn1g04599 Nelumbo nucifera HOM05D004306 ORTHO05D005055 1.1e-235 819.7 442 85.3
Eucgr.H02295 Eucalyptus grandis HOM05D004306 ORTHO05D005055 3.2e-235 818.1 451 83.6
Migut.L00204 Erythranthe guttata HOM05D004306 ORTHO05D005055 2.1e-234 815.5 451 84.7
GSVIVG01000135001 Vitis vinifera HOM05D004306 ORTHO05D005055 2.1e-234 815.5 450 84.0
AUR62003989 Chenopodium quinoa HOM05D004306 ORTHO05D005055 2.8e-234 815.1 447 83.4
Hund13938 Selenicereus undatus HOM05D004306 ORTHO05D005055 4.7e-234 814.3 471 80.7
Gorai.007G222100 Gossypium raimondii HOM05D004306 ORTHO05D005055 6.1e-234 813.9 451 84.7
Haze_15301 Corylus avellana HOM05D004306 ORTHO05D005055 8.0e-234 813.5 527 74.6
RcHm_v2.0_Chr2g0107581 Rosa chinensis HOM05D004306 ORTHO05D005055 8.0e-234 813.5 451 85.6
Lsat_1_v5_gn_2_82860 Lactuca sativa HOM05D004306 ORTHO05D005055 1.4e-233 812.8 447 84.6
Aqoxy6G02701 Aquilegia oxysepala HOM05D004306 ORTHO05D005055 2.3e-233 812.0 447 83.9
ClCG01G017440 Citrullus lanatus HOM05D004306 ORTHO05D005055 2.3e-233 812.0 452 83.8
PSO541G4466 Papaver somniferum HOM05D004306 ORTHO05D005055 2.3e-233 812.0 443 84.9
PGR102G2907 Punica granatum HOM05D004306 ORTHO05D005055 5.2e-233 810.8 451 83.1
GSVIVG01000137001 Vitis vinifera HOM05D004306 ORTHO05D005055 1.2e-232 809.7 447 84.6
AUR62040257 Chenopodium quinoa HOM05D004306 ORTHO05D005055 1.5e-232 809.3 449 82.9
CAN.G1075.22 Capsicum annuum HOM05D004306 ORTHO05D005055 7.5e-232 807.0 447 83.2
Oeu040626.2 Olea europaea HOM05D004306 ORTHO05D005055 1.1e-230 803.1 452 82.1
Glyma.17G161900 Glycine max HOM05D004306 ORTHO05D005055 2.4e-230 802.0 452 83.0
Lj4g0006645 Lotus japonicus HOM05D004306 ORTHO05D005055 5.4e-230 800.8 446 84.1
Oeu014230.2 Olea europaea HOM05D004306 ORTHO05D005055 7.0e-230 800.4 452 81.6
Sed0025668 Sechium edule HOM05D004306 ORTHO05D005055 7.0e-230 800.4 452 82.1
arahy.Tifrunner.gnm1.ann1.GV60EB Arachis hypogaea HOM05D004306 ORTHO05D005055 9.2e-230 800.0 451 82.9
MBI16_g09132_MAGBIO Magnolia biondii HOM05D004306 ORTHO05D005055 9.2e-230 800.0 447 83.9
BolC1t00152H Brassica oleracea HOM05D004306 ORTHO05D005055 1.6e-229 799.3 455 82.4
A01p01390 Brassica napus HOM05D004306 ORTHO05D005055 5.9e-229 797.3 452 82.1
C01p01570 Brassica napus HOM05D004306 ORTHO05D005055 5.9e-229 797.3 455 82.4
BraA01t00135Z Brassica rapa HOM05D004306 ORTHO05D005055 5.9e-229 797.3 452 82.1
AL7G13210 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 7.8e-229 797.0 453 81.9
Cc07_g06920 Coffea canephora HOM05D004306 ORTHO05D005055 7.8e-229 797.0 447 82.3
Peaxi162Scf00264g00117 Petunia axillaris HOM05D004306 ORTHO05D005055 2.3e-228 795.4 452 81.2
PGSC0003DMG400024965 Solanum tuberosum HOM05D004306 ORTHO05D005055 8.6e-228 793.5 449 81.7
AL7G13200 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 1.5e-227 792.7 452 81.6
CARHR245950 Cardamine hirsuta HOM05D004306 ORTHO05D005055 1.5e-227 792.7 452 82.3
Thhalv10025178m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 1.5e-227 792.7 452 81.9
CDE04G2054 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 1.9e-227 792.3 454 82.6
Solyc02g092530.4 Solanum lycopersicum HOM05D004306 ORTHO05D005055 2.5e-227 792.0 447 81.9
Carub.0007s0271 Capsella rubella HOM05D004306 ORTHO05D005055 4.3e-227 791.2 453 81.5
Nitab4.5_0000651g0100 Nicotiana tabacum HOM05D004306 ORTHO05D005055 7.3e-227 790.4 449 81.1
AT4G37560 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 9.5e-227 790.0 452 81.9
THA.LOC104819873 Tarenaya hassleriana HOM05D004306 ORTHO05D005055 9.5e-227 790.0 485 77.9
AT4G37550 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 1.2e-226 789.6 452 82.1
Sopen02g037110 Solanum pennellii HOM05D004306 ORTHO05D005055 1.6e-226 789.3 439 82.9
CARHR245960 Cardamine hirsuta HOM05D004306 ORTHO05D005055 2.8e-226 788.5 452 81.0
Aa31LG6G14430 Aethionema arabicum HOM05D004306 ORTHO05D005055 4.7e-226 787.7 452 81.2
Lj4g0023143 Lotus japonicus HOM05D004306 ORTHO05D005055 4.7e-226 787.7 445 82.7
Thhalv10025180m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 1.0e-225 786.6 452 80.8
Sp7g35240 Schrenkiella parvula HOM05D004306 ORTHO05D005055 1.4e-225 786.2 452 81.0
MSTRG.15357 Avicennia marina HOM05D004306 ORTHO05D005055 4.0e-225 784.6 447 82.1
SGA_v2.0_scaffold21G09395 Striga asiatica HOM05D004306 ORTHO05D005055 2.6e-224 781.9 451 80.7
EL10Ac6g15639 Beta vulgaris HOM05D004306 ORTHO05D005055 3.4e-224 781.6 452 80.3
SalBow5G1134 Salvia bowleyana HOM05D004306 ORTHO05D005055 7.5e-224 780.4 452 80.8
Nitab4.5_0006069g0040 Nicotiana tabacum HOM05D004306 ORTHO05D005055 1.3e-223 779.6 505 73.3
SalBow5G1710 Salvia bowleyana HOM05D004306 ORTHO05D005055 1.3e-223 779.6 452 80.8
Sp7g35230 Schrenkiella parvula HOM05D004306 ORTHO05D005055 2.9e-223 778.5 447 80.3
vmacro05397 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 2.9e-223 778.5 448 82.4
Os01g0764900 Oryza sativa ssp. japonica HOM05D004306 ORTHO05D005055 1.4e-222 776.2 451 79.4
BraA01t00136Z Brassica rapa HOM05D004306 ORTHO05D005055 2.4e-222 775.4 452 80.3
BolC1t00153H Brassica oleracea HOM05D004306 ORTHO05D005055 3.2e-222 775.0 452 80.1
BcaNung05904 Brassica carinata HOM05D004306 ORTHO05D005055 4.1e-222 774.6 452 80.1
C01p01580 Brassica napus HOM05D004306 ORTHO05D005055 4.1e-222 774.6 452 80.1
A01p01400 Brassica napus HOM05D004306 ORTHO05D005055 9.2e-222 773.5 452 79.9
Zm00001eb370290 Zea mays HOM05D004306 ORTHO05D005055 2.0e-221 772.3 455 78.2
Sabra05G0116200 Salix brachista HOM05D004306 ORTHO05D005055 5.6e-219 764.2 496 73.8
Hma1.2p1_0730F.1_g209845 Hydrangea macrophylla HOM05D004306 ORTHO05D005055 8.0e-218 760.4 515 72.0
BcaNung05906 Brassica carinata HOM05D004306 ORTHO05D005055 1.5e-216 756.1 455 79.3
MELO3C007621.2 Cucumis melo HOM05D004306 ORTHO05D005055 9.2e-214 746.9 412 83.7
unitig_748.g8394 Utricularia gibba HOM05D004306 ORTHO05D005055 4.6e-213 744.6 442 77.6
BcaNung05905 Brassica carinata HOM05D004306 ORTHO05D005055 6.0e-213 744.2 455 78.7
CSS0047878 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 2.8e-210 735.3 442 79.4
DCAR_025786 Daucus carota HOM05D004306 ORTHO05D005055 5.8e-208 727.6 452 76.3
Psat0ss839g0200 Pisum sativum HOM05D004306 ORTHO05D005055 8.3e-207 723.8 379 88.1
Cfa004110 Carpinus fangiana HOM05D004306 ORTHO05D005055 1.1e-201 706.8 463 74.3
Cre16.g691750 Chlamydomonas reinhardtii HOM05D004306 ORTHO05D005055 1.2e-200 703.4 442 74.7
SMO141G0231 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 1.1e-198 696.8 449 72.4
Pp3c3_32950 Physcomitrium patens HOM05D004306 ORTHO05D005055 2.8e-194 682.2 446 70.9
HPP92_014148 Vanilla planifolia HOM05D004306 ORTHO05D005055 8.1e-194 680.6 388 82.0
ATR0019G017 Amborella trichopoda HOM05D004306 ORTHO05D005055 5.2e-193 677.9 376 82.4
Ah.02g125510 Amaranthus hybridus HOM05D004306 ORTHO05D005055 1.3e-191 673.3 456 71.1
CSS0039286 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 1.6e-186 656.4 447 70.7
Sc16g0000120 Simmondsia chinensis HOM05D004306 ORTHO05D005055 3.4e-176 622.1 334 86.8
CSS0041574 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 3.3e-171 605.5 451 68.3
HPP92_014166 Vanilla planifolia HOM05D004306 ORTHO05D005055 6.7e-164 581.3 434 67.5
arahy.Tifrunner.gnm1.ann1.HR4B5C Arachis hypogaea HOM05D004306 ORTHO05D005055 7.2e-158 561.2 298 87.6
Sc16g0000140 Simmondsia chinensis HOM05D004306 ORTHO05D005055 7.4e-155 551.2 299 85.6
Zm00001eb152190 Zea mays HOM05D004306 ORTHO05D005055 1.3e-154 550.4 316 78.5
COL.COLO4_11552 Corchorus olitorius HOM05D004306 ORTHO05D005055 3.2e-150 535.8 463 62.4
DCAR_025787 Daucus carota HOM05D004306 ORTHO05D005055 1.8e-137 493.4 288 78.5
Oeu013288.2 Olea europaea HOM05D004306 ORTHO05D005055 9.4e-134 481.1 451 56.3
SMO170G0023 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 5.2e-124 448.7 379 58.3
SEGI_32720 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 2.2e-114 416.8 295 65.8
ATR0019G021 Amborella trichopoda HOM05D004306 ORTHO05D005055 7.5e-99 365.2 280 63.9
MD00G1015700 Malus domestica HOM05D004306 ORTHO05D005055 8.3e-98 361.7 200 81.5
DCAR_000330 Daucus carota HOM05D004306 ORTHO05D005055 4.3e-78 296.2 161 85.1
Cfa025028 Carpinus fangiana HOM05D004306 ORTHO05D005055 2.0e-67 260.8 262 51.9
EL10Ac5g12500 Beta vulgaris HOM05D004306 ORTHO05D005055 7.6e-67 258.8 140 83.6
SEGI_23023 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 1.7e-66 257.7 148 77.7
MD00G1015600 Malus domestica HOM05D004306 ORTHO05D005055 4.9e-66 256.1 197 66.0
EL10Ac1g01850 Beta vulgaris HOM05D004306 ORTHO05D005055 8.4e-66 255.4 150 76.7
SEGI_27901 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 3.9e-63 246.5 145 78.6
arahy.Tifrunner.gnm1.ann1.ZW9ABU Arachis hypogaea HOM05D004306 ORTHO05D005055 1.6e-61 241.1 153 71.9
SEGI_13173 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 3.1e-60 236.9 156 70.5
Sc16g0000130 Simmondsia chinensis HOM05D004306 ORTHO05D005055 1.5e-59 234.6 153 66.0
COL.COLO4_11551 Corchorus olitorius HOM05D004306 ORTHO05D005055 2.8e-53 213.8 135 76.3
RcHm_v2.0_Chr2g0107621 Rosa chinensis HOM05D004306 ORTHO05D005055 4.2e-49 199.9 136 70.6
TPR.G23871 Trifolium pratense HOM05D004306 ORTHO05D005055 6.7e-47 192.6 111 83.8
CDE07G1667 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 2.0e-38 164.5 117 66.7
EL10Ac4g09102 Beta vulgaris HOM05D004306 ORTHO05D005055 5.3e-36 156.4 131 57.3
FAN28G1106 Fragaria x ananassa HOM05D004306 ORTHO05D005055 2.6e-27 127.5 73 80.8
Lj4C160G10 Lonicera japonica HOM05D004306 ORTHO05D005055 5.0e-26 123.2 73 76.7
vmacro05396 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 1.9e-25 121.3 74 73.0
Cfa004111 Carpinus fangiana HOM05D004306 ORTHO05D005055 2.5e-25 120.9 78 73.1
ATR0515G001 Amborella trichopoda HOM05D004306 ORTHO05D005055 3.6e-24 117.1 55 94.5
SGA_v2.0_scaffold21G09394 Striga asiatica HOM05D004306 ORTHO05D005055 2.3e-23 114.4 70 71.4
AUR62003988 Chenopodium quinoa HOM05D004306 ORTHO05D005055 3.1e-20 104.0 67 71.6
Dinv30076 Davidia involucrata HOM05D004306 ORTHO05D005055 1.6e-19 101.7 67 68.7
Psat5g012000 Pisum sativum HOM05D004306 ORTHO05D005055 1.5e-17 95.1 80 55.0
SEGI_03818 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 8.0e-16 89.4 67 58.2
Eucgr.H02294 Eucalyptus grandis HOM05D004306 ORTHO05D005055 6.8e-15 86.3 71 54.9
Cc07_g06910 Coffea canephora HOM05D004306 ORTHO05D005055 4.4e-14 83.6 62 62.9
Nitab4.5_0000032g0200 Nicotiana tabacum HOM05D004306 ORTHO05D005055 3.7e-13 80.5 49 71.4
EL10Ac4g09101 Beta vulgaris HOM05D004306 ORTHO05D005055 2.0e-11 74.7 44 70.5
PRCOL_00001243 Prasinoderma coloniale HOM05D004306 ORTHO05D005055 2.0e-11 74.7 427 24.4
Thecc.01G069900 Theobroma cacao HOM05D004306 ORTHO05D005055 1.0e-10 72.4 36 88.9


User provided reference genes

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