Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G0671 Cannabis sativa HOM05D003718 ORTHO05D004402 0.0e+00 1309.3 692 100.0
Prupe.8G221600 Prunus persica HOM05D003718 ORTHO05D004402 3.1e-306 1054.7 693 78.4
Cfa013046 Carpinus fangiana HOM05D003718 ORTHO05D004402 8.8e-301 1036.6 692 77.3
QL09p039591 Quercus lobata HOM05D003718 ORTHO05D004402 1.5e-300 1035.8 711 76.2
Dinv34637 Davidia involucrata HOM05D003718 ORTHO05D004402 3.5e-297 1024.6 689 75.8
CiPaw.03G266000 Carya illinoinensis HOM05D003718 ORTHO05D004402 7.7e-297 1023.5 692 76.2
CiPaw.04G187700 Carya illinoinensis HOM05D003718 ORTHO05D004402 7.2e-295 1016.9 692 75.1
MD05G1194900 Malus domestica HOM05D003718 ORTHO05D004402 2.8e-294 1015.0 700 75.7
Thecc.01G255900 Theobroma cacao HOM05D003718 ORTHO05D004402 1.4e-293 1012.7 692 74.3
MD10G1181500 Malus domestica HOM05D003718 ORTHO05D004402 3.4e-292 1008.1 701 75.3
RcHm_v2.0_Chr6g0287811 Rosa chinensis HOM05D003718 ORTHO05D004402 3.5e-289 998.0 693 76.8
Atru.chr5.1725 Acer truncatum HOM05D003718 ORTHO05D004402 1.0e-288 996.5 692 74.1
TWI75G1389 Tripterygium wilfordii HOM05D003718 ORTHO05D004402 3.9e-288 994.6 689 75.0
FvH4_2g21250 Fragaria vesca HOM05D003718 ORTHO05D004402 8.6e-288 993.4 693 75.8
Duzib211G0290 Durio zibethinus HOM05D003718 ORTHO05D004402 1.5e-287 992.6 692 72.3
TWI12G1081 Tripterygium wilfordii HOM05D003718 ORTHO05D004402 7.3e-287 990.3 688 74.9
Manes.12G033700 Manihot esculenta HOM05D003718 ORTHO05D004402 2.8e-286 988.4 697 73.2
CSS0049010 Camellia sinensis var. sinensis HOM05D003718 ORTHO05D004402 2.3e-285 985.3 688 74.1
Gorai.001G179000 Gossypium raimondii HOM05D003718 ORTHO05D004402 3.1e-285 984.9 692 73.0
Gohir.D07G156100 Gossypium hirsutum HOM05D003718 ORTHO05D004402 5.2e-285 984.2 692 73.0
FAN15G3248 Fragaria x ananassa HOM05D003718 ORTHO05D004402 1.2e-284 983.0 714 73.2
Ciclev10019124m.g Citrus clementina HOM05D003718 ORTHO05D004402 2.0e-284 982.2 692 73.0
CSS0040480 Camellia sinensis var. sinensis HOM05D003718 ORTHO05D004402 2.6e-284 981.9 693 74.0
GSVIVG01028357001 Vitis vinifera HOM05D003718 ORTHO05D004402 2.6e-284 981.9 694 73.6
Gohir.A07G149800 Gossypium hirsutum HOM05D003718 ORTHO05D004402 7.5e-284 980.3 692 72.4
TAR633G0796 Trochodendron aralioides HOM05D003718 ORTHO05D004402 1.7e-283 979.2 693 73.2
Actinidia07305 Actinidia chinensis HOM05D003718 ORTHO05D004402 2.2e-283 978.8 686 73.3
Potri.005G226100 Populus trichocarpa HOM05D003718 ORTHO05D004402 4.9e-283 977.6 695 72.9
Duzib138G1036 Durio zibethinus HOM05D003718 ORTHO05D004402 1.1e-282 976.5 691 71.8
FAN24G2691 Fragaria x ananassa HOM05D003718 ORTHO05D004402 3.2e-282 974.9 714 73.1
Hma1.2p1_0273F.1_g109540 Hydrangea macrophylla HOM05D003718 ORTHO05D004402 3.2e-282 974.9 689 73.4
Duzib133G1085 Durio zibethinus HOM05D003718 ORTHO05D004402 1.2e-281 973.0 692 72.1
Manes.13G035300 Manihot esculenta HOM05D003718 ORTHO05D004402 2.0e-281 972.2 697 72.3
Potri.002G036600 Populus trichocarpa HOM05D003718 ORTHO05D004402 2.7e-281 971.8 695 72.9
Eucgr.K03255 Eucalyptus grandis HOM05D003718 ORTHO05D004402 4.6e-281 971.1 694 72.6
CsaV3_1G015830 Cucumis sativus L. HOM05D003718 ORTHO05D004402 6.6e-280 967.2 692 71.8
FAN27G0576 Fragaria x ananassa HOM05D003718 ORTHO05D004402 5.6e-279 964.1 747 70.1
TAR362G0778 Trochodendron aralioides HOM05D003718 ORTHO05D004402 5.6e-279 964.1 695 72.8
Glyma.03G164400 Glycine max HOM05D003718 ORTHO05D004402 7.3e-279 963.8 692 73.3
Glyma.19G165800 Glycine max HOM05D003718 ORTHO05D004402 3.6e-278 961.4 692 73.3
MELO3C025537.2 Cucumis melo HOM05D003718 ORTHO05D004402 3.1e-277 958.4 692 71.4
Sabra02G0029600 Salix brachista HOM05D003718 ORTHO05D004402 5.2e-277 957.6 727 71.0
Sabra05G0174600 Salix brachista HOM05D003718 ORTHO05D004402 2.0e-276 955.7 718 69.9
Sed0001928 Sechium edule HOM05D003718 ORTHO05D004402 6.4e-275 950.7 692 70.5
Phvul.001G162000 Phaseolus vulgaris HOM05D003718 ORTHO05D004402 2.7e-273 945.3 692 71.7
VMungo1383G2169 Vigna mungo HOM05D003718 ORTHO05D004402 1.0e-272 943.3 692 71.4
Nn1g02814 Nelumbo nucifera HOM05D003718 ORTHO05D004402 2.3e-272 942.2 693 69.8
Gohir.A11G131600 Gossypium hirsutum HOM05D003718 ORTHO05D004402 6.6e-272 940.6 692 70.2
Gohir.D11G137575 Gossypium hirsutum HOM05D003718 ORTHO05D004402 1.9e-271 939.1 692 69.7
Gorai.007G147600 Gossypium raimondii HOM05D003718 ORTHO05D004402 2.5e-271 938.7 692 69.5
vmacro14814 Vaccinium macrocarpon HOM05D003718 ORTHO05D004402 5.6e-271 937.6 647 74.5
Lj5g0026512 Lotus japonicus HOM05D003718 ORTHO05D004402 1.2e-268 929.9 688 70.6
Lalb_Chr02g0152551 Lupinus albus HOM05D003718 ORTHO05D004402 1.2e-268 929.9 695 70.8
Aqoxy1G01842 Aquilegia oxysepala HOM05D003718 ORTHO05D004402 2.0e-268 929.1 702 69.7
THA.LOC104812416 Tarenaya hassleriana HOM05D003718 ORTHO05D004402 3.4e-268 928.3 693 70.6
Nn3g19693 Nelumbo nucifera HOM05D003718 ORTHO05D004402 7.6e-268 927.2 692 69.4
Psat6g054080 Pisum sativum HOM05D003718 ORTHO05D004402 4.9e-267 924.5 694 69.3
THA.LOC104806254 Tarenaya hassleriana HOM05D003718 ORTHO05D004402 1.4e-266 922.9 691 69.8
Solyc05g046330.4 Solanum lycopersicum HOM05D003718 ORTHO05D004402 4.1e-266 921.4 690 69.6
Sopen05g027610 Solanum pennellii HOM05D003718 ORTHO05D004402 4.1e-266 921.4 690 69.6
Lalb_Chr21g0313961 Lupinus albus HOM05D003718 ORTHO05D004402 4.6e-265 917.9 694 69.6
CAN.G106.18 Capsicum annuum HOM05D003718 ORTHO05D004402 6.6e-264 914.1 692 69.9
Medtr1g069780 Medicago truncatula HOM05D003718 ORTHO05D004402 8.6e-264 913.7 692 68.8
Peaxi162Scf00320g00717 Petunia axillaris HOM05D003718 ORTHO05D004402 1.5e-263 912.9 691 69.0
arahy.Tifrunner.gnm1.ann1.FU7SP6 Arachis hypogaea HOM05D003718 ORTHO05D004402 4.3e-263 911.4 707 68.3
Sopen07g005600 Solanum pennellii HOM05D003718 ORTHO05D004402 7.3e-263 910.6 690 68.7
Thhalv10024580m.g Eutrema salsugineum HOM05D003718 ORTHO05D004402 1.6e-262 909.4 693 69.4
arahy.Tifrunner.gnm1.ann1.QXN52H Arachis hypogaea HOM05D003718 ORTHO05D004402 6.2e-262 907.5 698 68.9
Ca_09672_v3 Cicer arietinum L. HOM05D003718 ORTHO05D004402 8.1e-262 907.1 690 68.8
CARHR227730 Cardamine hirsuta HOM05D003718 ORTHO05D004402 2.4e-261 905.6 686 69.5
PGR031G0689 Punica granatum HOM05D003718 ORTHO05D004402 2.4e-261 905.6 677 69.3
Migut.D00439 Erythranthe guttata HOM05D003718 ORTHO05D004402 3.4e-260 901.7 689 68.5
Carub.0007s2028 Capsella rubella HOM05D003718 ORTHO05D004402 1.3e-259 899.8 685 68.9
AUR62013766 Chenopodium quinoa HOM05D003718 ORTHO05D004402 1.9e-258 896.0 682 67.9
Glyma.10G038000 Glycine max HOM05D003718 ORTHO05D004402 5.4e-258 894.4 663 71.3
Phvul.007G191800 Phaseolus vulgaris HOM05D003718 ORTHO05D004402 7.1e-258 894.0 690 69.1
Cc01_g18200 Coffea canephora HOM05D003718 ORTHO05D004402 1.3e-256 889.8 689 66.9
Sp7g19230 Schrenkiella parvula HOM05D003718 ORTHO05D004402 2.3e-256 889.0 693 68.0
AL7G32970 Arabidopsis lyrata HOM05D003718 ORTHO05D004402 5.1e-256 887.9 685 68.0
ClCG03G002590 Citrullus lanatus HOM05D003718 ORTHO05D004402 8.7e-256 887.1 692 67.5
CAN.G54.7 Capsicum annuum HOM05D003718 ORTHO05D004402 1.5e-255 886.3 690 66.7
MSTRG.21485 Avicennia marina HOM05D003718 ORTHO05D004402 9.6e-255 883.6 689 67.1
TPR.G5874 Trifolium pratense HOM05D003718 ORTHO05D004402 2.1e-254 882.5 646 70.6
ECA236G3831 Erigeron canadensis HOM05D003718 ORTHO05D004402 2.8e-254 882.1 693 67.1
BolC1t01458H Brassica oleracea HOM05D003718 ORTHO05D004402 3.6e-254 881.7 688 67.9
BcaC09g51252 Brassica carinata HOM05D003718 ORTHO05D004402 8.1e-254 880.6 688 67.7
AT4G21150 Arabidopsis thaliana HOM05D003718 ORTHO05D004402 5.3e-253 877.9 685 67.4
PSO210G5136 Papaver somniferum HOM05D003718 ORTHO05D004402 1.3e-251 873.2 693 67.4
Oeu052043.2 Olea europaea HOM05D003718 ORTHO05D004402 3.8e-251 871.7 797 60.1
Rhsim01G0262400 Rhododendron simsii HOM05D003718 ORTHO05D004402 5.4e-250 867.8 608 73.5
PSO832G2930 Papaver somniferum HOM05D003718 ORTHO05D004402 1.2e-249 866.7 693 67.1
arahy.Tifrunner.gnm1.ann1.EWE7BX Arachis hypogaea HOM05D003718 ORTHO05D004402 1.7e-248 862.8 723 64.2
DCAR_000921 Daucus carota HOM05D003718 ORTHO05D004402 6.6e-248 860.9 692 64.9
Solyc07g014700.4 Solanum lycopersicum HOM05D003718 ORTHO05D004402 6.6e-248 860.9 645 69.5
BraA03t14340Z Brassica rapa HOM05D003718 ORTHO05D004402 8.7e-248 860.5 708 66.1
Nitab4.5_0001572g0020 Nicotiana tabacum HOM05D003718 ORTHO05D004402 3.3e-247 858.6 690 65.8
SalBow4G0483 Salvia bowleyana HOM05D003718 ORTHO05D004402 9.6e-247 857.1 707 64.2
arahy.Tifrunner.gnm1.ann1.B1YDGW Arachis hypogaea HOM05D003718 ORTHO05D004402 4.8e-246 854.7 711 64.8
VMungo0720G0687 Vigna mungo HOM05D003718 ORTHO05D004402 3.1e-245 852.0 668 67.5
Psat3g056400 Pisum sativum HOM05D003718 ORTHO05D004402 5.3e-245 851.3 691 66.6
BcaNung03839 Brassica carinata HOM05D003718 ORTHO05D004402 9.0e-245 850.5 693 65.7
Lsat_1_v5_gn_8_92540 Lactuca sativa HOM05D003718 ORTHO05D004402 1.2e-244 850.1 678 65.5
Nitab4.5_0000413g0180 Nicotiana tabacum HOM05D003718 ORTHO05D004402 4.5e-244 848.2 690 65.5
HanXRQChr04g0110491 Helianthus annuus HOM05D003718 ORTHO05D004402 5.8e-244 847.8 645 68.1
Hund17111 Selenicereus undatus HOM05D003718 ORTHO05D004402 1.3e-243 846.7 639 67.4
EL10Ac1g00739 Beta vulgaris HOM05D003718 ORTHO05D004402 2.2e-243 845.9 710 63.2
TPR.G9204 Trifolium pratense HOM05D003718 ORTHO05D004402 2.4e-242 842.4 708 65.7
BraA01t01195Z Brassica rapa HOM05D003718 ORTHO05D004402 3.5e-241 838.6 655 67.6
C01p15100 Brassica napus HOM05D003718 ORTHO05D004402 4.6e-241 838.2 654 67.0
COL.COLO4_04023 Corchorus olitorius HOM05D003718 ORTHO05D004402 3.0e-240 835.5 625 69.3
CDE07G1087 Ceratophyllum demersum HOM05D003718 ORTHO05D004402 3.9e-240 835.1 687 62.6
A01p12510 Brassica napus HOM05D003718 ORTHO05D004402 1.9e-239 832.8 655 67.0
SGA_v2.0_scaffold138G35211 Striga asiatica HOM05D003718 ORTHO05D004402 1.8e-237 826.2 800 57.2
Aa31LG6G3160 Aethionema arabicum HOM05D003718 ORTHO05D004402 1.5e-236 823.2 660 66.5
Rhsim13G0036100 Rhododendron simsii HOM05D003718 ORTHO05D004402 2.6e-236 822.4 607 69.9
SGA_v2.0_scaffold1G00624 Striga asiatica HOM05D003718 ORTHO05D004402 7.6e-236 820.8 695 64.2
A03p52670 Brassica napus HOM05D003718 ORTHO05D004402 1.9e-234 816.2 661 66.3
CDE04G2599 Ceratophyllum demersum HOM05D003718 ORTHO05D004402 2.5e-234 815.8 687 62.2
Lj1C68G8 Lonicera japonica HOM05D003718 ORTHO05D004402 5.1e-232 808.1 642 66.5
C07p51100 Brassica napus HOM05D003718 ORTHO05D004402 8.7e-232 807.4 663 65.3
BolC7t45610H Brassica oleracea HOM05D003718 ORTHO05D004402 8.7e-232 807.4 663 65.3
Os01g0911200 Oryza sativa ssp. japonica HOM05D003718 ORTHO05D004402 1.3e-230 803.5 688 61.5
Sc02g0003190 Simmondsia chinensis HOM05D003718 ORTHO05D004402 9.0e-229 797.3 623 66.3
Zm00001eb143710 Zea mays HOM05D003718 ORTHO05D004402 2.0e-228 796.2 696 60.5
ATR0736G006 Amborella trichopoda HOM05D003718 ORTHO05D004402 2.2e-227 792.7 645 63.6
Zm00001eb365020 Zea mays HOM05D003718 ORTHO05D004402 2.5e-226 789.3 697 60.4
AUR62023389 Chenopodium quinoa HOM05D003718 ORTHO05D004402 4.6e-225 785.0 677 62.2
Lsat_1_v5_gn_5_182920 Lactuca sativa HOM05D003718 ORTHO05D004402 6.1e-225 784.6 693 61.8
Ca_08683_v3 Cicer arietinum L. HOM05D003718 ORTHO05D004402 7.9e-225 784.3 695 63.0
Peaxi162Scf00906g00225 Petunia axillaris HOM05D003718 ORTHO05D004402 6.3e-222 774.6 670 63.1
HPP92_000351 Vanilla planifolia HOM05D003718 ORTHO05D004402 1.3e-219 766.9 684 60.1
BolC3t20629H Brassica oleracea HOM05D003718 ORTHO05D004402 3.2e-218 762.3 727 59.8
unitig_22.g5287 Utricularia gibba HOM05D003718 ORTHO05D004402 5.0e-211 738.4 711 57.1
C03p83480 Brassica napus HOM05D003718 ORTHO05D004402 1.9e-210 736.5 740 58.0
Nitab4.5_0005411g0050 Nicotiana tabacum HOM05D003718 ORTHO05D004402 1.4e-197 693.7 650 59.1
Cpa.g.sc20.44 Carica papaya HOM05D003718 ORTHO05D004402 1.6e-193 680.2 694 55.6
unitig_8.g3735 Utricularia gibba HOM05D003718 ORTHO05D004402 6.8e-192 674.9 652 56.3
BcaC01g00710 Brassica carinata HOM05D003718 ORTHO05D004402 8.3e-182 641.3 549 64.5
Ah.05g177770 Amaranthus hybridus HOM05D003718 ORTHO05D004402 5.0e-179 632.1 530 62.1
Nitab4.5_0005095g0020 Nicotiana tabacum HOM05D003718 ORTHO05D004402 4.9e-158 562.4 503 60.4
Mapoly0028s0115 Marchantia polymorpha HOM05D003718 ORTHO05D004402 6.4e-150 535.4 688 44.9
Actinidia37517 Actinidia chinensis HOM05D003718 ORTHO05D004402 8.4e-150 535.0 564 54.6
CsaV3_UNG055470 Cucumis sativus L. HOM05D003718 ORTHO05D004402 1.1e-144 518.1 432 64.6
AUR62043414 Chenopodium quinoa HOM05D003718 ORTHO05D004402 1.3e-129 468.0 352 69.9
Psat0ss9065g0080 Pisum sativum HOM05D003718 ORTHO05D004402 1.6e-121 441.0 435 57.5
FAN20G1425 Fragaria x ananassa HOM05D003718 ORTHO05D004402 4.3e-114 416.4 329 66.9
SEGI_27157 Sequoiadendron giganteum HOM05D003718 ORTHO05D004402 1.1e-112 411.8 361 60.4
vmacro02673 Vaccinium macrocarpon HOM05D003718 ORTHO05D004402 2.5e-109 400.6 315 67.0
Haze_21407 Corylus avellana HOM05D003718 ORTHO05D004402 1.2e-108 398.3 307 67.8
A08p15230 Brassica napus HOM05D003718 ORTHO05D001664 5.5e-101 372.9 521 46.3
HanXRQChr11g0336771 Helianthus annuus HOM05D003718 ORTHO05D004402 3.9e-99 366.7 375 57.6
EL10Ac1g02094 Beta vulgaris HOM05D003718 ORTHO05D004402 4.1e-96 356.7 350 55.7
AagrBONN_evm.TU.Sc2ySwM_340.234 Anthoceros agrestis HOM05D003718 ORTHO05D004402 1.2e-82 312.0 424 45.5
CBR_g32152 Chara braunii HOM05D003718 ORTHO05D004402 4.2e-69 266.9 640 32.5
Hma1.2p1_0576F.1_g181950 Hydrangea macrophylla HOM05D003718 ORTHO05D004402 4.4e-66 256.9 308 50.3
Pp3c7_6480 Physcomitrium patens HOM05D003718 ORTHO05D004402 4.4e-66 256.9 384 44.0
Psat7g093680 Pisum sativum HOM05D003718 ORTHO05D004402 2.0e-63 248.1 299 51.2
Actinidia09536 Actinidia chinensis HOM05D003718 ORTHO05D004402 9.8e-58 229.2 263 51.0
Actinidia09538 Actinidia chinensis HOM05D003718 ORTHO05D004402 4.1e-56 223.8 156 73.7
FAN27G1677 Fragaria x ananassa HOM05D003718 ORTHO05D004402 6.6e-54 216.5 178 64.0
HPP92_000418 Vanilla planifolia HOM05D003718 ORTHO05D004402 1.5e-53 215.3 646 29.6
SHI09762 Sapria himalayana HOM05D003718 ORTHO05D004402 9.5e-45 186.0 172 61.0
SEGI_31370 Sequoiadendron giganteum HOM05D003718 ORTHO05D004402 1.2e-44 185.7 221 48.0
CsaV3_UNG055460 Cucumis sativus L. HOM05D003718 ORTHO05D004402 6.2e-44 183.3 198 51.5
arahy.Tifrunner.gnm1.ann1.S1G2KX Arachis hypogaea HOM05D003718 ORTHO05D004402 2.4e-40 171.4 118 71.2
Psat6g086960 Pisum sativum HOM05D003718 ORTHO05D004402 1.2e-34 152.5 96 79.2
Actinidia09537 Actinidia chinensis HOM05D003718 ORTHO05D004402 2.6e-34 151.4 163 52.8
SMO367G0218 Selaginella moellendorffii HOM05D003718 ORTHO05D004402 4.1e-32 144.1 138 53.6
Actinidia25800 Actinidia chinensis HOM05D003718 ORTHO05D004402 8.7e-30 136.3 194 43.3
Actinidia30158 Actinidia chinensis HOM05D003718 ORTHO05D004402 6.2e-28 130.2 88 69.3
arahy.Tifrunner.gnm1.ann1.6B4W14 Arachis hypogaea HOM05D003718 ORTHO05D004402 1.7e-25 122.1 79 75.9
arahy.Tifrunner.gnm1.ann1.EX0EXI Arachis hypogaea HOM05D004703 ORTHO05D005801 3.8e-25 120.9 80 73.8
arahy.Tifrunner.gnm1.ann1.N0B60F Arachis hypogaea HOM05D003718 ORTHO05D004402 1.6e-23 115.5 150 48.0
Cre08.g368450 Chlamydomonas reinhardtii HOM05D003718 ORTHO05D004402 6.0e-23 113.6 304 34.5
Psat6g087000 Pisum sativum HOM05D003718 ORTHO05D004402 2.8e-20 104.8 67 79.1
Actinidia30157 Actinidia chinensis HOM05D003718 ORTHO05D057597 2.4e-19 101.7 87 63.2
Lsat_1_v5_gn_3_107020 Lactuca sativa HOM05D003718 ORTHO05D004402 7.6e-18 96.7 106 48.1
arahy.Tifrunner.gnm1.ann1.LM6F6Z Arachis hypogaea HOM05D003718 ORTHO05D004402 7.1e-16 90.1 181 35.4
Actinidia25801 Actinidia chinensis HOM05D003718 ORTHO05D004402 6.7e-14 83.6 118 44.9
Lsat_1_v5_gn_4_881 Lactuca sativa HOM05D003718 ORTHO05D004402 4.3e-13 80.9 128 38.3
Gohir.A01G185580 Gossypium hirsutum HOM05D003718 ORTHO05D000087 8.4e-09 66.6 46 65.2
Lsat_1_v5_gn_9_27880 Lactuca sativa HOM05D003718 ORTHO05D004402 1.4e-08 65.9 178 32.0
C03p03420 Brassica napus HOM05D029148 ORTHO05D032464 5.1e-06 57.4 38 73.7
BolC3t12883H Brassica oleracea HOM05D029148 ORTHO05D032464 5.1e-06 57.4 38 73.7


User provided reference genes

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