Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G0668 Cannabis sativa HOM05D005327 ORTHO05D006655 9.8e-203 709.9 357 100.0
TAR383G0919 Trochodendron aralioides HOM05D005327 ORTHO05D006655 5.9e-131 471.5 430 58.6
MBI16_g18209_MAGBIO Magnolia biondii HOM05D000751 ORTHO05D000889 3.6e-128 462.2 435 57.9
GSVIVG01035172001 Vitis vinifera HOM05D005327 ORTHO05D006655 4.6e-128 461.8 436 58.9
Rhsim01G0113000 Rhododendron simsii HOM05D005327 ORTHO05D006655 7.9e-128 461.1 436 58.0
Haze_19034 Corylus avellana HOM05D005327 ORTHO05D006655 1.0e-127 460.7 422 59.2
Actinidia02486 Actinidia chinensis HOM05D005327 ORTHO05D006655 1.9e-126 456.4 435 58.2
Dinv02614 Davidia involucrata HOM05D005327 ORTHO05D006655 4.8e-125 451.8 437 57.0
Duzib170G0396 Durio zibethinus HOM05D005327 ORTHO05D006655 4.8e-125 451.8 433 57.3
MD16G1240500 Malus domestica HOM05D005327 ORTHO05D006655 8.2e-125 451.1 436 56.9
Thecc.09G189900 Theobroma cacao HOM05D005327 ORTHO05D006655 1.4e-124 450.3 423 58.2
DCAR_019096 Daucus carota HOM05D005327 ORTHO05D006655 4.5e-123 445.3 436 56.9
Ciclev10008332m.g Citrus clementina HOM05D005327 ORTHO05D006655 5.9e-123 444.9 437 55.6
HanXRQChr03g0067401 Helianthus annuus HOM05D005327 ORTHO05D006655 5.9e-123 444.9 436 56.4
TWI34G0155 Tripterygium wilfordii HOM05D005327 ORTHO05D006655 1.3e-122 443.7 436 57.3
PGR044G1838 Punica granatum HOM05D005327 ORTHO05D006655 1.7e-122 443.4 433 56.4
Medtr8g101540 Medicago truncatula HOM05D005327 ORTHO05D006655 5.0e-122 441.8 437 56.1
Lalb_Chr05g0223671 Lupinus albus HOM05D005327 ORTHO05D006655 6.5e-122 441.4 432 57.2
Atru.chr7.986 Acer truncatum HOM05D005327 ORTHO05D006655 1.1e-121 440.7 430 56.3
Hma1.2p1_0022F.1_g014820 Hydrangea macrophylla HOM05D005327 ORTHO05D006655 1.4e-121 440.3 434 56.5
MD13G1235800 Malus domestica HOM05D005327 ORTHO05D006655 1.9e-121 439.9 436 55.7
Manes.15G099200 Manihot esculenta HOM05D005327 ORTHO05D006655 1.9e-121 439.9 424 56.4
Lalb_Chr09g0331881 Lupinus albus HOM05D005327 ORTHO05D006655 3.2e-121 439.1 432 56.5
CiPaw.15G154300 Carya illinoinensis HOM05D005327 ORTHO05D006655 9.4e-121 437.6 444 55.0
ClCG06G013980 Citrullus lanatus HOM05D005327 ORTHO05D006655 3.6e-120 435.6 432 56.9
Migut.J00826 Erythranthe guttata HOM05D005327 ORTHO05D006655 1.0e-119 434.1 436 55.7
RcHm_v2.0_Chr4g0398191 Rosa chinensis HOM05D005327 ORTHO05D006655 1.0e-119 434.1 436 54.6
Psat7g020320 Pisum sativum HOM05D005327 ORTHO05D006655 1.4e-119 433.7 432 56.0
Potri.006G070500 Populus trichocarpa HOM05D005327 ORTHO05D006655 1.4e-119 433.7 431 55.7
MSTRG.19391 Avicennia marina HOM05D005327 ORTHO05D006655 2.3e-119 433.0 432 55.8
FAN12G0339 Fragaria x ananassa HOM05D005327 ORTHO05D006655 2.3e-119 433.0 436 54.6
Lj4g0024487 Lotus japonicus HOM05D005327 ORTHO05D006655 2.3e-119 433.0 432 54.6
Ca_17407_v3 Cicer arietinum L. HOM05D005327 ORTHO05D006655 3.9e-119 432.2 433 55.2
Aa31LG3G3560 Aethionema arabicum HOM05D005327 ORTHO05D006655 5.1e-119 431.8 439 55.6
THA.LOC104826954 Tarenaya hassleriana HOM05D005327 ORTHO05D006655 5.1e-119 431.8 424 55.9
PSO063G6174 Papaver somniferum HOM05D005327 ORTHO05D006655 8.8e-119 431.0 433 53.3
PSO170G4496 Papaver somniferum HOM05D005327 ORTHO05D006655 1.5e-118 430.3 436 53.4
Glyma.08G028600 Glycine max HOM05D005327 ORTHO05D006655 2.0e-118 429.9 431 56.4
Gohir.D05G002100 Gossypium hirsutum HOM05D005327 ORTHO05D006655 2.0e-118 429.9 436 54.6
Gorai.009G002000 Gossypium raimondii HOM05D005327 ORTHO05D006655 2.0e-118 429.9 436 54.8
Glyma.05G222000 Glycine max HOM05D005327 ORTHO05D006655 2.6e-118 429.5 431 55.5
Lsat_1_v5_gn_7_59540 Lactuca sativa HOM05D005327 ORTHO05D006655 2.6e-118 429.5 437 53.8
AUR62021329 Chenopodium quinoa HOM05D005327 ORTHO05D006655 3.3e-118 429.1 429 55.2
Eucgr.C02197 Eucalyptus grandis HOM05D005327 ORTHO05D006655 7.4e-118 427.9 442 54.3
Aqoxy7G02706 Aquilegia oxysepala HOM05D005327 ORTHO05D006655 9.7e-118 427.6 437 53.8
SGA_v2.0_scaffold31G12725 Striga asiatica HOM05D005327 ORTHO05D006655 1.3e-117 427.2 436 54.8
Cpa.g.sc115.46 Carica papaya HOM05D005327 ORTHO05D006655 1.7e-117 426.8 436 53.7
AUR62033244 Chenopodium quinoa HOM05D005327 ORTHO05D006655 4.8e-117 425.2 430 55.3
CsaV3_1G032190 Cucumis sativus L. HOM05D005327 ORTHO05D006655 1.4e-116 423.7 437 55.4
ECA240G0405 Erigeron canadensis HOM05D005327 ORTHO05D006655 3.1e-116 422.5 413 55.4
AT3G10700 Arabidopsis thaliana HOM05D005327 ORTHO05D006655 4.1e-116 422.2 425 55.8
ATR0626G140 Amborella trichopoda HOM05D005327 ORTHO05D006655 9.1e-116 421.0 436 53.4
AL3G22170 Arabidopsis lyrata HOM05D005327 ORTHO05D006655 9.1e-116 421.0 425 55.5
Thhalv10020814m.g Eutrema salsugineum HOM05D005327 ORTHO05D006655 9.1e-116 421.0 424 56.1
MELO3C017398.2 Cucumis melo HOM05D005327 ORTHO05D006655 1.5e-115 420.2 437 54.7
BraA05t22640Z Brassica rapa HOM05D005327 ORTHO05D006655 1.3e-114 417.2 426 55.6
Carub.0003s0993 Capsella rubella HOM05D005327 ORTHO05D006655 1.3e-114 417.2 424 55.2
A05p38490 Brassica napus HOM05D005327 ORTHO05D006655 3.8e-114 415.6 426 55.6
Sp3g09020 Schrenkiella parvula HOM05D005327 ORTHO05D006655 1.4e-113 413.7 424 55.0
C05p57390 Brassica napus HOM05D005327 ORTHO05D006655 2.5e-113 412.9 426 55.2
FvH4_4g06430 Fragaria vesca HOM05D005327 ORTHO05D006655 2.1e-112 409.8 414 54.6
Nn8g41033 Nelumbo nucifera HOM05D005327 ORTHO05D006655 2.1e-112 409.8 437 53.5
CARHR085280 Cardamine hirsuta HOM05D005327 ORTHO05D006655 6.1e-112 408.3 407 56.3
Sabra06G0052400 Salix brachista HOM05D005327 ORTHO05D006655 1.1e-110 404.1 476 49.8
arahy.Tifrunner.gnm1.ann1.X8NFG9 Arachis hypogaea HOM05D005327 ORTHO05D006655 2.0e-110 403.3 453 49.9
arahy.Tifrunner.gnm1.ann1.BX5CIC Arachis hypogaea HOM05D005327 ORTHO05D006655 2.2e-109 399.8 453 49.9
Solyc07g014640.3 Solanum lycopersicum HOM05D005327 ORTHO05D006655 4.8e-109 398.7 406 54.7
unitig_749.g14193 Utricularia gibba HOM05D005327 ORTHO05D006655 1.2e-107 394.0 426 54.2
Nitab4.5_0004947g0030 Nicotiana tabacum HOM05D005327 ORTHO05D006655 4.5e-107 392.1 433 52.7
vmacro20765 Vaccinium macrocarpon HOM05D005327 ORTHO05D006655 7.7e-107 391.3 529 46.1
Hund09044 Selenicereus undatus HOM05D005327 ORTHO05D006655 1.1e-105 387.5 460 49.6
SEGI_37801 Sequoiadendron giganteum HOM05D005327 ORTHO05D006655 2.5e-105 386.3 436 48.9
Ah.11g044360 Amaranthus hybridus HOM05D005327 ORTHO05D006655 1.2e-104 384.0 434 51.8
Nitab4.5_0000053g0140 Nicotiana tabacum HOM05D005327 ORTHO05D006655 2.7e-104 382.9 417 53.5
Oeu011821.1 Olea europaea HOM05D005327 ORTHO05D006655 3.3e-102 375.9 343 60.1
EL10Ac8g18314 Beta vulgaris HOM05D005327 ORTHO05D006655 3.8e-98 362.5 551 41.7
Os04g0608100 Oryza sativa ssp. japonica HOM05D005327 ORTHO05D006655 1.0e-95 354.4 433 46.4
Peaxi162Scf00889g00111 Petunia axillaris HOM05D005327 ORTHO05D006655 3.0e-95 352.8 460 46.7
unitig_77.g31482 Utricularia gibba HOM05D005327 ORTHO05D006655 1.2e-94 350.9 408 51.0
SalBow6G3212 Salvia bowleyana HOM05D005327 ORTHO05D006655 1.5e-94 350.5 524 43.1
Sopen07g005500 Solanum pennellii HOM05D005327 ORTHO05D006655 2.6e-94 349.7 382 51.8
Zm00001eb071360 Zea mays HOM05D005327 ORTHO05D006655 5.7e-94 348.6 435 45.7
Lj5A713T18 Lonicera japonica HOM05D005327 ORTHO05D006655 1.3e-93 347.4 482 44.8
HPP92_000193 Vanilla planifolia HOM05D005327 ORTHO05D006655 1.7e-90 337.0 432 46.1
Pp3c23_15130 Physcomitrium patens HOM05D005327 ORTHO05D006655 3.8e-90 335.9 428 46.3
TPR.G25461 Trifolium pratense HOM05D005327 ORTHO05D006655 1.5e-89 334.0 367 54.2
CDE06G0639 Ceratophyllum demersum HOM05D005327 ORTHO05D006655 2.5e-89 333.2 428 45.8
VMungo0251G1981 Vigna mungo HOM05D005327 ORTHO05D006655 4.7e-88 328.9 586 39.8
Prupe.1G067200 Prunus persica HOM05D005327 ORTHO05D006655 6.3e-85 318.5 353 51.8
BolC5t34395H Brassica oleracea HOM05D005327 ORTHO05D006655 4.1e-84 315.8 358 53.4
FAN07G1666 Fragaria x ananassa HOM05D005327 ORTHO05D006655 1.3e-82 310.8 220 70.5
Hma1.2p1_0022F.1_g014810 Hydrangea macrophylla HOM05D005327 ORTHO05D006655 1.3e-82 310.8 221 72.9
Phvul.002G303800 Phaseolus vulgaris HOM05D005327 ORTHO05D006655 1.3e-82 310.8 220 69.1
Sed0024331 Sechium edule HOM05D005327 ORTHO05D006655 1.3e-82 310.8 369 50.4
vmacro20791 Vaccinium macrocarpon HOM05D005327 ORTHO05D006655 1.1e-81 307.8 210 73.8
Mapoly0128s0021 Marchantia polymorpha HOM05D005327 ORTHO05D006655 1.9e-81 307.0 424 42.2
SMO356G0298 Selaginella moellendorffii HOM05D005327 ORTHO05D006655 2.5e-81 306.6 435 42.1
FAN22G1263 Fragaria x ananassa HOM05D005327 ORTHO05D006655 1.2e-80 304.3 220 69.1
Sed0022639 Sechium edule HOM05D005327 ORTHO05D006655 1.6e-80 303.9 220 70.5
Sc14g0001350 Simmondsia chinensis HOM05D005327 ORTHO05D006655 1.6e-75 287.3 346 48.6
CAN.G33.6 Capsicum annuum HOM05D005327 ORTHO05D006655 1.1e-60 238.0 431 37.4
Gohir.A05G001832 Gossypium hirsutum HOM05D005327 ORTHO05D006655 1.5e-54 217.6 164 66.5
CBR_g4778 Chara braunii HOM05D005327 ORTHO05D000002 3.4e-54 216.5 297 46.5
QL11p009789 Quercus lobata HOM05D005327 ORTHO05D006655 1.1e-52 211.5 406 38.7
HPP92_000244 Vanilla planifolia HOM05D005327 ORTHO05D006655 9.0e-47 191.8 161 60.2
MCO11G047 Micromonas commoda HOM05D005327 ORTHO05D006655 7.6e-46 188.7 404 32.4
PGR044G0615 Punica granatum HOM05D005327 ORTHO05D006655 2.2e-45 187.2 166 62.0
COL.COLO4_23452 Corchorus olitorius HOM05D005327 ORTHO05D006655 2.9e-45 186.8 180 56.7
Sopen00g011970 Solanum pennellii HOM05D005327 ORTHO05D006655 5.4e-44 182.6 268 42.2
Solyc09g031880.3 Solanum lycopersicum HOM05D005327 ORTHO05D006655 2.1e-43 180.6 355 38.6
BcaC05g29437 Brassica carinata HOM05D005327 ORTHO05D006655 1.3e-42 177.9 113 73.5
CSS0021007 Camellia sinensis var. sinensis HOM05D005327 ORTHO05D006655 2.5e-41 173.7 112 75.0
AagrBONN_evm.TU.Sc2ySwM_344.300 Anthoceros agrestis HOM05D005327 ORTHO05D006655 7.3e-41 172.2 191 51.8
Lj5A731T8 Lonicera japonica HOM05D005327 ORTHO05D006655 1.1e-39 168.3 112 70.5
SEGI_09644 Sequoiadendron giganteum HOM05D005327 ORTHO05D006655 9.0e-39 165.2 111 68.5
Gohir.A05G001766 Gossypium hirsutum HOM05D005327 ORTHO05D006655 1.3e-37 161.4 111 69.4
HPP92_000243 Vanilla planifolia HOM05D005327 ORTHO05D006655 4.9e-37 159.5 112 67.0
SEGI_13698 Sequoiadendron giganteum HOM05D005327 ORTHO05D006655 6.4e-29 132.5 85 70.6
A01p41940 Brassica napus HOM05D005327 ORTHO05D006655 4.3e-25 119.8 83 66.3
QL11p009727 Quercus lobata HOM05D005327 ORTHO05D006655 4.3e-25 119.8 79 73.4
Thhalv10026961m.g Eutrema salsugineum HOM05D005327 ORTHO05D006655 9.3e-20 102.1 60 86.7
QL11p009810 Quercus lobata HOM05D005327 ORTHO05D006655 1.6e-19 101.3 73 60.3
AL1G36750 Arabidopsis lyrata HOM05D005327 ORTHO05D006655 7.9e-19 99.0 54 81.5
TPR.G2647 Trifolium pratense HOM05D005327 ORTHO05D006655 6.7e-18 95.9 68 64.7
Sabra18G0112000 Salix brachista HOM05D005327 ORTHO05D006655 2.8e-16 90.5 78 60.3
C03p49960 Brassica napus HOM05D005327 ORTHO05D006655 5.0e-13 79.7 44 79.5
C03p47280 Brassica napus HOM05D005327 ORTHO05D006655 3.2e-12 77.0 44 77.3
BcaC01g03662 Brassica carinata HOM05D005327 ORTHO05D006655 4.2e-12 76.6 44 77.3
BcaC01g03663 Brassica carinata HOM05D005327 ORTHO05D006655 4.2e-12 76.6 44 77.3
BolC3t17287H Brassica oleracea HOM05D005327 ORTHO05D006655 4.2e-12 76.6 44 77.3
BcaB04g17517 Brassica carinata HOM05D006002 ORTHO05D007651 5.1e-10 69.7 58 56.9
SHI03098 Sapria himalayana HOM05D005327 ORTHO05D006655 1.9e-09 67.8 45 62.2
CSS0006230 Camellia sinensis var. sinensis HOM05D005327 ORTHO05D006655 4.3e-09 66.6 33 93.9
QL11p009748 Quercus lobata HOM05D005327 ORTHO05D000004 1.7e-08 64.7 59 64.4
QL11p009804 Quercus lobata HOM05D000003 ORTHO05D000004 1.8e-07 61.2 61 50.8
arahy.Tifrunner.gnm1.ann1.TSV22Z Arachis hypogaea HOM05D026511 ORTHO05D038857 5.3e-07 59.7 45 60.0
HanXRQChr17g0539291 Helianthus annuus HOM05D002718 ORTHO05D003269 1.5e-06 58.2 217 26.3
SHI03089 Sapria himalayana HOM05D005327 ORTHO05D006655 1.5e-06 58.2 35 77.1
Solyc09g031890.3 Solanum lycopersicum HOM05D005327 ORTHO05D006655 2.0e-06 57.8 58 51.7


User provided reference genes

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