Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G0632 Cannabis sativa HOM05D003898 ORTHO05D004642 4.9e-188 661.0 337 100.0
CANSAT25G0948 Cannabis sativa HOM05D003898 ORTHO05D004642 1.1e-136 490.3 317 81.4
QL12p035494 Quercus lobata HOM05D003898 ORTHO05D004642 2.1e-114 416.4 315 68.6
Cpa.g.sc49.114 Carica papaya HOM05D003898 ORTHO05D004642 4.7e-114 415.2 313 68.7
Manes.02G157700 Manihot esculenta HOM05D003898 ORTHO05D004642 2.6e-112 409.5 309 69.6
RcHm_v2.0_Chr7g0240421 Rosa chinensis HOM05D003898 ORTHO05D004642 3.4e-112 409.1 328 66.5
Prupe.1G507900 Prunus persica HOM05D003898 ORTHO05D004642 4.4e-112 408.7 328 67.1
FvH4_5g38420 Fragaria vesca HOM05D003898 ORTHO05D004642 9.8e-112 407.5 325 67.7
CiPaw.06G023700 Carya illinoinensis HOM05D003898 ORTHO05D004642 1.8e-110 403.3 315 67.9
MD08G1174000 Malus domestica HOM05D003898 ORTHO05D004642 2.4e-110 402.9 328 66.5
Thecc.08G115200 Theobroma cacao HOM05D003898 ORTHO05D004642 5.4e-110 401.7 311 68.2
Solyc12g056840.2 Solanum lycopersicum HOM05D003898 ORTHO05D004642 7.0e-110 401.4 307 69.1
COL.COLO4_16517 Corchorus olitorius HOM05D003898 ORTHO05D004642 9.2e-110 401.0 311 68.8
DCAR_028260 Daucus carota HOM05D003898 ORTHO05D004642 9.2e-110 401.0 320 66.9
PGSC0003DMG401016958 Solanum tuberosum HOM05D003898 ORTHO05D004642 3.5e-109 399.1 307 68.4
PGR044G1262 Punica granatum HOM05D003898 ORTHO05D004642 5.9e-109 398.3 313 67.1
Sed0026073 Sechium edule HOM05D003898 ORTHO05D004642 7.8e-109 397.9 310 67.1
Potri.002G090500 Populus trichocarpa HOM05D003898 ORTHO05D004642 1.0e-108 397.5 315 67.0
Sopen12g029520 Solanum pennellii HOM05D003898 ORTHO05D004642 1.3e-108 397.1 307 68.4
PSO210G6710 Papaver somniferum HOM05D003898 ORTHO05D004642 1.7e-108 396.7 319 66.1
RcHm_v2.0_Chr1g0340891 Rosa chinensis HOM05D003898 ORTHO05D004642 1.7e-108 396.7 327 65.4
Lj1g0002951 Lotus japonicus HOM05D003898 ORTHO05D004642 2.9e-108 396.0 326 63.2
Potri.005G170600 Populus trichocarpa HOM05D003898 ORTHO05D004642 2.9e-108 396.0 328 65.9
Sc16g0001430 Simmondsia chinensis HOM05D003898 ORTHO05D004642 2.9e-108 396.0 310 66.1
Gohir.A01G187300 Gossypium hirsutum HOM05D003898 ORTHO05D004642 5.0e-108 395.2 310 67.4
MELO3C011378.2 Cucumis melo HOM05D003898 ORTHO05D004642 6.6e-108 394.8 314 65.9
ClCG08G010840 Citrullus lanatus HOM05D003898 ORTHO05D004642 1.5e-107 393.7 323 65.3
Gohir.D01G182400 Gossypium hirsutum HOM05D003898 ORTHO05D004642 1.9e-107 393.3 310 67.4
Gorai.002G220000 Gossypium raimondii HOM05D003898 ORTHO05D004642 1.9e-107 393.3 310 67.4
Ca_02530_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 3.3e-107 392.5 327 65.1
ECA246G0783 Erigeron canadensis HOM05D003898 ORTHO05D004642 3.3e-107 392.5 330 62.7
CiPaw.05G230800 Carya illinoinensis HOM05D003898 ORTHO05D004642 5.6e-107 391.7 322 65.2
Haze_00543 Corylus avellana HOM05D003898 ORTHO05D004642 7.3e-107 391.3 361 60.1
CsaV3_6G035700 Cucumis sativus L. HOM05D003898 ORTHO05D004642 7.3e-107 391.3 314 66.2
Nitab4.5_0000425g0260 Nicotiana tabacum HOM05D003898 ORTHO05D004642 1.6e-106 390.2 318 66.4
HanXRQChr05g0162311 Helianthus annuus HOM05D003898 ORTHO05D004642 2.1e-106 389.8 307 67.1
Lalb_Chr11g0065591 Lupinus albus HOM05D003898 ORTHO05D004642 2.1e-106 389.8 309 66.7
PSO447G0107 Papaver somniferum HOM05D003898 ORTHO05D004642 2.8e-106 389.4 319 64.9
Psat5g107440 Pisum sativum HOM05D003898 ORTHO05D004642 2.8e-106 389.4 327 63.6
Duzib093G1469 Durio zibethinus HOM05D003898 ORTHO05D004642 3.6e-106 389.0 311 66.2
Glyma.04G254600 Glycine max HOM05D003898 ORTHO05D004642 3.6e-106 389.0 307 66.8
VMungo1309G1855 Vigna mungo HOM05D003898 ORTHO05D004642 3.6e-106 389.0 319 64.3
CSS0048138 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 4.7e-106 388.7 311 66.2
FAN13G1941 Fragaria x ananassa HOM05D003898 ORTHO05D004642 4.7e-106 388.7 355 62.0
Cfa015947 Carpinus fangiana HOM05D003898 ORTHO05D004642 6.2e-106 388.3 270 73.0
HanXRQChr01g0001161 Helianthus annuus HOM05D003898 ORTHO05D004642 6.2e-106 388.3 307 66.8
Lalb_Chr08g0241771 Lupinus albus HOM05D003898 ORTHO05D004642 6.2e-106 388.3 313 65.5
FvH4_7g08221 Fragaria vesca HOM05D003898 ORTHO05D004642 1.0e-105 387.5 315 65.4
Aqoxy2G00480 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 1.4e-105 387.1 318 63.2
Lj4C109T16 Lonicera japonica HOM05D003898 ORTHO05D004642 1.4e-105 387.1 340 62.4
TPR.G26798 Trifolium pratense HOM05D003898 ORTHO05D004642 1.4e-105 387.1 323 64.7
TAR625G0437 Trochodendron aralioides HOM05D003898 ORTHO05D004642 1.4e-105 387.1 323 64.7
Lsat_1_v5_gn_6_68860 Lactuca sativa HOM05D003898 ORTHO05D004642 2.3e-105 386.3 268 72.8
vmacro04776 Vaccinium macrocarpon HOM05D003898 ORTHO05D004642 3.1e-105 386.0 315 66.0
FAN08G2468 Fragaria x ananassa HOM05D003898 ORTHO05D004642 5.2e-105 385.2 341 62.5
SGA_v2.0_scaffold11G05890 Striga asiatica HOM05D003898 ORTHO05D004642 8.9e-105 384.4 314 65.3
Phvul.009G026700 Phaseolus vulgaris HOM05D003898 ORTHO05D004642 1.2e-104 384.0 319 63.3
GSVIVG01008958001 Vitis vinifera HOM05D003898 ORTHO05D004642 1.2e-104 384.0 336 61.9
EL10Ac6g15432 Beta vulgaris HOM05D003898 ORTHO05D004642 1.5e-104 383.6 317 63.7
Glyma.06G107500 Glycine max HOM05D003898 ORTHO05D004642 1.5e-104 383.6 313 64.2
Actinidia33168 Actinidia chinensis HOM05D003898 ORTHO05D004642 3.4e-104 382.5 308 66.2
Rhsim07G0198900 Rhododendron simsii HOM05D003898 ORTHO05D004642 4.4e-104 382.1 316 64.9
MSTRG.24959 Avicennia marina HOM05D003898 ORTHO05D004642 5.8e-104 381.7 314 63.7
Peaxi162Scf00160g01643 Petunia axillaris HOM05D003898 ORTHO05D004642 7.5e-104 381.3 306 67.0
Medtr4g112080 Medicago truncatula HOM05D003898 ORTHO05D004642 1.3e-103 380.6 313 64.2
CSS0037064 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 1.7e-103 380.2 308 66.6
Lsat_1_v5_gn_9_70200 Lactuca sativa HOM05D003898 ORTHO05D004642 4.9e-103 378.6 313 65.5
Dinv13069 Davidia involucrata HOM05D003898 ORTHO05D004642 8.3e-103 377.9 320 65.3
CAN.G47.19 Capsicum annuum HOM05D003898 ORTHO05D004642 1.1e-102 377.5 331 62.8
Sabra02G0071500 Salix brachista HOM05D003898 ORTHO05D004642 1.9e-102 376.7 324 63.0
TWI12G0005 Tripterygium wilfordii HOM05D003898 ORTHO05D004642 2.4e-102 376.3 309 66.0
Ciclev10005436m.g Citrus clementina HOM05D003898 ORTHO05D004642 3.2e-102 375.9 321 63.2
Migut.C00215 Erythranthe guttata HOM05D003898 ORTHO05D004642 9.2e-102 374.4 308 64.3
BcaNung04450 Brassica carinata HOM05D003898 ORTHO05D004642 1.6e-101 373.6 309 64.4
Carub.0001s1201 Capsella rubella HOM05D003898 ORTHO05D004642 1.6e-101 373.6 311 63.0
THA.LOC104813137 Tarenaya hassleriana HOM05D003898 ORTHO05D004642 7.8e-101 371.3 311 64.3
CARHR012640 Cardamine hirsuta HOM05D003898 ORTHO05D004642 1.3e-100 370.5 310 63.9
TPR.G32957 Trifolium pratense HOM05D003898 ORTHO05D004642 1.7e-100 370.2 311 63.3
C09p74420 Brassica napus HOM05D003898 ORTHO05D004642 3.9e-100 369.0 309 64.4
Cc10_g06070 Coffea canephora HOM05D003898 ORTHO05D004642 5.0e-100 368.6 264 71.6
arahy.Tifrunner.gnm1.ann1.HG05DD Arachis hypogaea HOM05D003898 ORTHO05D004642 8.6e-100 367.9 264 71.2
BolC9t60175H Brassica oleracea HOM05D003898 ORTHO05D004642 1.1e-99 367.5 309 64.1
Sp6g40350 Schrenkiella parvula HOM05D003898 ORTHO05D004642 1.1e-99 367.5 311 64.6
C02p00370 Brassica napus HOM05D003898 ORTHO05D004642 1.5e-99 367.1 309 65.7
Medtr3g073550 Medicago truncatula HOM05D003898 ORTHO05D004642 1.5e-99 367.1 306 64.1
Sopen04g028670 Solanum pennellii HOM05D003898 ORTHO05D004642 1.9e-99 366.7 322 60.6
A10p33510 Brassica napus HOM05D003898 ORTHO05D004642 2.5e-99 366.3 308 64.0
CDE10G0849 Ceratophyllum demersum HOM05D003898 ORTHO05D004642 2.5e-99 366.3 328 61.3
arahy.Tifrunner.gnm1.ann1.PF76WK Arachis hypogaea HOM05D003898 ORTHO05D004642 3.3e-99 365.9 264 70.8
TAR381G1034 Trochodendron aralioides HOM05D003898 ORTHO05D004642 3.3e-99 365.9 264 71.6
Thhalv10014147m.g Eutrema salsugineum HOM05D003898 ORTHO05D004642 9.5e-99 364.4 308 63.6
arahy.Tifrunner.gnm1.ann1.K1QIEY Arachis hypogaea HOM05D003898 ORTHO05D004642 8.1e-98 361.3 358 57.3
AUR62019012 Chenopodium quinoa HOM05D003898 ORTHO05D004642 1.1e-97 360.9 314 61.5
AUR62027853 Chenopodium quinoa HOM05D003898 ORTHO05D004642 1.1e-97 360.9 314 61.1
Solyc04g072480.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 1.1e-97 360.9 361 55.4
Nitab4.5_0006745g0040 Nicotiana tabacum HOM05D003898 ORTHO05D004642 1.4e-97 360.5 293 66.9
CAN.G617.2 Capsicum annuum HOM05D003898 ORTHO05D004642 2.3e-97 359.8 327 58.4
arahy.Tifrunner.gnm1.ann1.Z23D3B Arachis hypogaea HOM05D003898 ORTHO05D004642 6.8e-97 358.2 273 68.9
BraA02t04709Z Brassica rapa HOM05D003898 ORTHO05D004642 6.8e-97 358.2 317 61.5
BcaNung06026 Brassica carinata HOM05D003898 ORTHO05D004642 2.0e-96 356.7 310 64.8
AT1G12350 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 1.7e-95 353.6 308 62.7
BraA10t45381Z Brassica rapa HOM05D003898 ORTHO05D004642 2.9e-95 352.8 333 58.9
FAN01G1002 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.4e-94 350.5 332 59.6
Os08g0176100 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 1.4e-94 350.5 309 60.2
Aa31LG9G14440 Aethionema arabicum HOM05D003898 ORTHO05D004642 4.1e-94 349.0 287 64.1
AL1G23670 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 5.4e-94 348.6 310 61.6
Os02g0575200 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 2.3e-92 343.2 313 60.1
Oeu038191.1 Olea europaea HOM05D003898 ORTHO05D004642 3.0e-92 342.8 288 64.6
SalBow7G2097 Salvia bowleyana HOM05D003898 ORTHO05D004642 3.6e-90 335.9 318 59.4
Zm00001eb182920 Zea mays HOM05D003898 ORTHO05D004642 1.8e-89 333.6 313 56.9
SEGI_30417 Sequoiadendron giganteum HOM05D003898 ORTHO05D004642 3.4e-88 329.3 312 57.1
Pp3c11_3000 Physcomitrium patens HOM05D003898 ORTHO05D004642 1.3e-87 327.4 307 56.0
RcHm_v2.0_Chr1g0340911 Rosa chinensis HOM05D003898 ORTHO05D004642 1.3e-87 327.4 265 64.9
Nitab4.5_0001307g0170 Nicotiana tabacum HOM05D003898 ORTHO05D004642 4.9e-87 325.5 311 57.9
Zm00001eb414730 Zea mays HOM05D003898 ORTHO05D004642 1.4e-86 323.9 308 58.4
HPP92_006004 Vanilla planifolia HOM05D003898 ORTHO05D004642 3.2e-86 322.8 331 53.8
FvH4_5g38402 Fragaria vesca HOM05D003898 ORTHO05D004642 4.6e-85 318.9 251 65.3
Solyc10g011840.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 1.7e-84 317.0 318 56.6
Nn1g05207 Nelumbo nucifera HOM05D003898 ORTHO05D004642 7.3e-83 311.6 235 66.4
Mapoly0004s0284 Marchantia polymorpha HOM05D003898 ORTHO05D004642 1.2e-82 310.8 309 54.0
MD15G1360400 Malus domestica HOM05D003898 ORTHO05D004642 1.6e-77 293.9 233 67.8
CSS0031031 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 2.3e-76 290.0 306 53.9
ATR0564G227 Amborella trichopoda HOM05D003898 ORTHO05D004642 7.3e-75 285.0 237 61.2
FAN06G3434 Fragaria x ananassa HOM05D000001 ORTHO05D000003 3.1e-73 279.6 324 51.2
Duzib116G0208 Durio zibethinus HOM05D003898 ORTHO05D004642 1.7e-71 273.9 311 53.1
SalBow1G7967 Salvia bowleyana HOM05D003898 ORTHO05D004642 9.3e-70 268.1 309 50.8
ClCG08G002640 Citrullus lanatus HOM05D003898 ORTHO05D004642 2.3e-68 263.5 454 42.1
AL6G11300 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 2.5e-67 260.0 200 66.5
SMO137G0130 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 9.6e-67 258.1 307 50.8
FAN04G1035 Fragaria x ananassa HOM05D003898 ORTHO05D004642 1.5e-59 234.2 211 61.6
SMO137G0020 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 1.6e-58 230.7 266 51.9
PGSC0003DMG400027542 Solanum tuberosum HOM05D003898 ORTHO05D004642 2.1e-58 230.3 183 65.0
AT5G02080 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 1.1e-57 228.0 184 66.3
DCAR_027594 Daucus carota HOM05D003898 ORTHO05D004642 1.5e-56 224.2 215 59.1
Atru.chr13.1300 Acer truncatum HOM05D003898 ORTHO05D004642 4.5e-56 222.6 173 67.6
CDE10G0276 Ceratophyllum demersum HOM05D003898 ORTHO05D004642 5.5e-54 215.7 154 69.5
Cre01.g048050 Chlamydomonas reinhardtii HOM05D003898 ORTHO05D004642 5.5e-54 215.7 255 47.5
BolC2t06037H Brassica oleracea HOM05D003898 ORTHO05D004642 6.0e-53 212.2 169 68.0
Sopen10g005660 Solanum pennellii HOM05D003898 ORTHO05D004642 6.0e-53 212.2 223 53.4
PRCOL_00003493 Prasinoderma coloniale HOM05D003898 ORTHO05D004642 1.3e-52 211.1 302 43.7
Psat4g046560 Pisum sativum HOM05D003898 ORTHO05D011365 2.3e-52 210.3 173 65.3
Dinv44720 Davidia involucrata HOM05D003898 ORTHO05D004642 6.3e-50 202.2 184 63.6
AagrBONN_evm.TU.Sc2ySwM_344.1574 Anthoceros agrestis HOM05D003898 ORTHO05D004642 1.4e-49 201.1 214 50.9
MCO09G707 Micromonas commoda HOM05D003898 ORTHO05D004642 4.5e-48 196.1 283 41.3
SMO137G0337 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 1.4e-46 191.0 220 49.1
Eucgr.F04382 Eucalyptus grandis HOM05D003898 ORTHO05D004642 3.5e-45 186.4 146 67.8
Nitab4.5_0000553g0060 Nicotiana tabacum HOM05D003898 ORTHO05D004642 7.9e-45 185.3 238 46.6
Lj4C710T9 Lonicera japonica HOM05D003898 ORTHO05D004642 1.8e-44 184.1 137 71.5
FAN18G1940 Fragaria x ananassa HOM05D003898 ORTHO05D004642 4.3e-43 179.5 199 54.3
Ca_25770_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 1.1e-41 174.9 153 64.1
unitig_32.g11143 Utricularia gibba HOM05D003898 ORTHO05D004642 1.4e-41 174.5 133 68.4
Cfa024377 Carpinus fangiana HOM05D003898 ORTHO05D004642 4.5e-40 169.5 273 42.9
Atru.chr13.1301 Acer truncatum HOM05D003898 ORTHO05D004642 6.5e-39 165.6 139 61.2
SEGI_10597 Sequoiadendron giganteum HOM05D003898 ORTHO05D004642 6.7e-36 155.6 149 56.4
CBR_g9000 Chara braunii HOM05D003898 ORTHO05D004642 3.3e-35 153.3 164 47.0
arahy.Tifrunner.gnm1.ann1.Z5SK82 Arachis hypogaea HOM05D003898 ORTHO05D004642 3.1e-33 146.7 175 49.7
Atru.chr4.493 Acer truncatum HOM05D003898 ORTHO05D004642 1.3e-31 141.4 118 60.2
Atru.chr1.2069 Acer truncatum HOM05D003898 ORTHO05D004642 1.4e-30 137.9 115 60.0
Duzib041G0680 Durio zibethinus HOM05D003898 ORTHO05D004642 8.8e-28 128.6 106 65.1
arahy.Tifrunner.gnm1.ann1.N7W281 Arachis hypogaea HOM05D003898 ORTHO05D004642 4.4e-27 126.3 135 52.6
CBR_g9001 Chara braunii HOM05D003898 ORTHO05D004642 6.3e-26 122.5 119 55.5
unitig_32.g11144 Utricularia gibba HOM05D003898 ORTHO05D004642 5.3e-25 119.4 117 59.0
arahy.Tifrunner.gnm1.ann1.9J7JQ6 Arachis hypogaea HOM05D003898 ORTHO05D004642 1.3e-18 98.2 58 77.6
Aqoxy480s002 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 1.5e-14 84.7 124 41.9
Ah.05g170600 Amaranthus hybridus HOM05D003898 ORTHO05D004642 7.2e-14 82.4 87 51.7
arahy.Tifrunner.gnm1.ann1.KW4E90 Arachis hypogaea HOM05D003898 ORTHO05D004642 6.8e-12 75.9 88 47.7
QL10p044069 Quercus lobata HOM05D003898 ORTHO05D004642 1.2e-11 75.1 84 56.0
QL02p062685 Quercus lobata HOM05D003898 ORTHO05D004642 2.2e-10 70.9 84 54.8
Peaxi162Scf00756g00110 Petunia axillaris HOM05D003898 ORTHO05D004642 3.1e-09 67.0 107 37.4
Aqoxy5G01116 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 4.1e-09 66.6 44 72.7
QL10p009819 Quercus lobata HOM05D003898 ORTHO05D004642 5.9e-08 62.8 61 57.4
QL08p011560 Quercus lobata HOM05D003898 ORTHO05D004642 3.8e-07 60.1 61 57.4


User provided reference genes

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