Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G0621 Cannabis sativa HOM05D000823 ORTHO05D000088 6.4e-148 527.3 254 100.0
PGR102G2553 Punica granatum HOM05D000823 ORTHO05D000088 4.4e-24 115.9 258 32.2
CANSAT80G0874 Cannabis sativa HOM05D000823 ORTHO05D000088 1.3e-20 104.4 250 32.8
Ciclev10026137m.g Citrus clementina HOM05D000823 ORTHO05D000088 1.1e-19 101.3 281 30.2
Aqoxy6G00935 Aquilegia oxysepala HOM05D000823 ORTHO05D000088 4.3e-19 99.4 253 28.9
Haze_08008 Corylus avellana HOM05D000823 ORTHO05D000088 9.6e-19 98.2 275 26.9
Haze_15178 Corylus avellana HOM05D000235 ORTHO05D000147 2.1e-18 97.1 248 31.0
CiPaw.01G027400 Carya illinoinensis HOM05D000823 ORTHO05D000088 4.8e-18 95.9 273 27.8
Nn6g32142 Nelumbo nucifera HOM05D000823 ORTHO05D000088 5.8e-16 89.0 255 29.4
MELO3C007521.2 Cucumis melo HOM05D000823 ORTHO05D000088 7.6e-16 88.6 264 28.0
BcaB04g20080 Brassica carinata HOM05D000823 ORTHO05D000088 2.2e-15 87.0 270 30.0
ClCG01G016540 Citrullus lanatus HOM05D000395 ORTHO05D000088 4.9e-15 85.9 268 26.5
Sed0022882 Sechium edule HOM05D000823 ORTHO05D000088 4.9e-15 85.9 259 25.5
Manes.13G131000 Manihot esculenta HOM05D000823 ORTHO05D000088 1.1e-14 84.7 292 28.1
TAR625G0462 Trochodendron aralioides HOM05D000823 ORTHO05D000088 1.4e-14 84.3 269 25.3
CsaV3_6G042810 Cucumis sativus L. HOM05D000823 ORTHO05D000088 7.1e-14 82.0 268 27.6
MBI16_g31478_MAGBIO Magnolia biondii HOM05D000823 ORTHO05D000088 1.2e-13 81.3 252 28.2
BolC9t54023H Brassica oleracea HOM05D000823 ORTHO05D000088 2.1e-13 80.5 263 30.0
Glyma.03G246400 Glycine max HOM05D000823 ORTHO05D000088 2.1e-13 80.5 274 26.6
Sed0023289 Sechium edule HOM05D000823 ORTHO05D000088 1.3e-12 77.8 265 27.5
A09p09600 Brassica napus HOM05D000823 ORTHO05D000088 3.0e-12 76.6 268 30.6
Ah.06g189660 Amaranthus hybridus HOM05D000823 ORTHO05D000088 8.7e-12 75.1 258 28.3
BcaC04g23179 Brassica carinata HOM05D000823 ORTHO05D000088 8.7e-12 75.1 268 30.2
Cc07_g20980 Coffea canephora HOM05D000823 ORTHO05D000088 8.7e-12 75.1 244 27.0
TAR381G0348 Trochodendron aralioides HOM05D000823 ORTHO05D000088 8.7e-12 75.1 260 24.2
C09p11350 Brassica napus HOM05D000823 ORTHO05D000088 1.5e-11 74.3 263 30.0
TWI39G0837 Tripterygium wilfordii HOM05D000823 ORTHO05D000088 1.9e-11 73.9 267 24.3
arahy.Tifrunner.gnm1.ann1.K3F6Y2 Arachis hypogaea HOM05D000823 ORTHO05D000088 7.4e-11 72.0 276 23.9
SalBow8G3609 Salvia bowleyana HOM05D000823 ORTHO05D000088 9.6e-11 71.6 231 28.6
TAR376G0714 Trochodendron aralioides HOM05D000823 ORTHO05D000088 9.6e-11 71.6 271 24.0
BraA09t36609Z Brassica rapa HOM05D000823 ORTHO05D000088 1.3e-10 71.2 266 29.3
PSO675G8304 Papaver somniferum HOM05D000395 ORTHO05D000088 1.6e-10 70.9 244 27.0
AUR62005183 Chenopodium quinoa HOM05D000823 ORTHO05D000088 6.2e-10 68.9 246 26.8
Medtr1g021290 Medicago truncatula HOM05D000823 ORTHO05D000088 6.2e-10 68.9 259 23.9
Lj7C16G12 Lonicera japonica HOM05D000395 ORTHO05D000088 1.1e-09 68.2 89 41.6
Lj7C19G3 Lonicera japonica HOM05D000395 ORTHO05D000088 1.8e-09 67.4 89 41.6
AUR62003245 Chenopodium quinoa HOM05D000823 ORTHO05D000088 2.4e-09 67.0 230 23.5
Phvul.006G100700 Phaseolus vulgaris HOM05D000823 ORTHO05D000088 2.4e-09 67.0 278 26.6
Aa31LG1G15520 Aethionema arabicum HOM05D000823 ORTHO05D000088 4.0e-09 66.2 295 23.7
Manes.13G130800 Manihot esculenta HOM05D000823 ORTHO05D000088 4.0e-09 66.2 250 27.2
MSTRG.16968 Avicennia marina HOM05D000823 ORTHO05D000088 9.0e-09 65.1 96 38.5
Nn5g29404 Nelumbo nucifera HOM05D000823 ORTHO05D000088 9.0e-09 65.1 210 25.7
PSO675G1309 Papaver somniferum HOM05D000395 ORTHO05D000088 9.0e-09 65.1 231 24.7
EL10Ac8g19102 Beta vulgaris HOM05D000823 ORTHO05D000088 1.2e-08 64.7 240 26.2
BcaC06g34772 Brassica carinata HOM05D000823 ORTHO05D000088 2.6e-08 63.5 281 26.0
C07p24780 Brassica napus HOM05D000823 ORTHO05D000088 2.6e-08 63.5 281 26.0
A07p16940 Brassica napus HOM05D000823 ORTHO05D000088 3.4e-08 63.2 281 25.6
BraA07t29420Z Brassica rapa HOM05D000823 ORTHO05D000088 3.4e-08 63.2 281 25.6
unitig_61.g26370 Utricularia gibba HOM05D000823 ORTHO05D000088 4.5e-08 62.8 93 33.3
Migut.B01169 Erythranthe guttata HOM05D000823 ORTHO05D000088 7.6e-08 62.0 246 26.8
AT5G66980 Arabidopsis thaliana HOM05D000823 ORTHO05D000088 9.9e-08 61.6 300 25.0
CiPaw.06G020200 Carya illinoinensis HOM05D000395 ORTHO05D000088 9.9e-08 61.6 271 25.1
ECA232G4654 Erigeron canadensis HOM05D000823 ORTHO05D016096 9.9e-08 61.6 89 41.6
Sed0020190 Sechium edule HOM05D000823 ORTHO05D000088 9.9e-08 61.6 72 38.9
arahy.Tifrunner.gnm1.ann1.41XJ7P Arachis hypogaea HOM05D000395 ORTHO05D000088 1.3e-07 61.2 263 23.2
Actinidia12967 Actinidia chinensis HOM05D008110 ORTHO05D000088 1.7e-07 60.8 247 23.5
Lj5g0024307 Lotus japonicus HOM05D000823 ORTHO05D000088 1.7e-07 60.8 66 42.4
Cpa.g.sc64.16 Carica papaya HOM05D000823 ORTHO05D000088 2.2e-07 60.5 66 42.4
Os03g0621600 Oryza sativa ssp. japonica HOM05D000823 ORTHO05D000088 2.2e-07 60.5 196 28.1
CAN.G555.3 Capsicum annuum HOM05D008110 ORTHO05D000088 2.9e-07 60.1 90 37.8
Lsat_1_v5_gn_3_94221 Lactuca sativa HOM05D000823 ORTHO05D000088 2.9e-07 60.1 127 31.5
COL.COLO4_26417 Corchorus olitorius HOM05D000823 ORTHO05D000088 3.8e-07 59.7 236 25.4
Psat6g011600 Pisum sativum HOM05D000823 ORTHO05D000088 3.8e-07 59.7 131 29.8
CSS0012563 Camellia sinensis var. sinensis HOM05D000395 ORTHO05D000088 4.9e-07 59.3 136 30.9
Medtr1g021330 Medicago truncatula HOM05D000823 ORTHO05D000088 4.9e-07 59.3 66 42.4
Medtr1g021360 Medicago truncatula HOM05D000823 ORTHO05D000088 4.9e-07 59.3 66 39.4
QL11p039199 Quercus lobata HOM05D000823 ORTHO05D000088 4.9e-07 59.3 114 28.9
Aqoxy3G01381 Aquilegia oxysepala HOM05D005797 ORTHO05D006479 6.4e-07 58.9 137 28.5
BcaB02g09965 Brassica carinata HOM05D000823 ORTHO05D000088 6.4e-07 58.9 262 26.7
MD04G1034600 Malus domestica HOM05D000823 ORTHO05D000088 6.4e-07 58.9 251 26.3
Medtr1g021440 Medicago truncatula HOM05D000823 ORTHO05D000088 6.4e-07 58.9 135 29.6
Ah.06g189670 Amaranthus hybridus HOM05D000823 ORTHO05D000088 8.4e-07 58.5 191 27.2
Glyma.14G079100 Glycine max HOM05D000823 ORTHO05D000088 8.4e-07 58.5 66 40.9
Glyma.17G246000 Glycine max HOM05D000823 ORTHO05D000088 8.4e-07 58.5 170 28.2
Medtr1g021350 Medicago truncatula HOM05D000823 ORTHO05D000088 8.4e-07 58.5 66 39.4
TPR.G13675 Trifolium pratense HOM05D000823 ORTHO05D000088 8.4e-07 58.5 132 30.3
TPR.G15760 Trifolium pratense HOM05D000823 ORTHO05D000088 8.4e-07 58.5 66 37.9
arahy.Tifrunner.gnm1.ann1.WQR5HD Arachis hypogaea HOM05D000395 ORTHO05D000088 1.1e-06 58.2 267 23.2
Haze_08007 Corylus avellana HOM05D000823 ORTHO05D000088 1.1e-06 58.2 86 33.7
Haze_08013 Corylus avellana HOM05D000823 ORTHO05D000088 1.1e-06 58.2 86 33.7
CsaV3_2G028280 Cucumis sativus L. HOM05D000823 ORTHO05D000088 1.1e-06 58.2 72 36.1
Manes.07G115100 Manihot esculenta HOM05D000395 ORTHO05D000088 1.1e-06 58.2 277 24.9
Dinv26764 Davidia involucrata HOM05D000823 ORTHO05D000088 1.4e-06 57.8 89 36.0
Lalb_Chr14g0368921 Lupinus albus HOM05D000823 ORTHO05D000088 1.4e-06 57.8 64 40.6
Rhsim09G0072000 Rhododendron simsii HOM05D000395 ORTHO05D000088 1.4e-06 57.8 283 22.3
Sopen01g040490 Solanum pennellii HOM05D000823 ORTHO05D000088 1.4e-06 57.8 93 36.6
TPR.G15766 Trifolium pratense HOM05D000823 ORTHO05D000088 1.4e-06 57.8 64 40.6
EL10Ac3g07242 Beta vulgaris HOM05D000395 ORTHO05D000088 1.9e-06 57.4 262 25.2
Migut.B01168 Erythranthe guttata HOM05D000823 ORTHO05D000088 1.9e-06 57.4 232 25.4
Lj7C16T11 Lonicera japonica HOM05D000395 ORTHO05D000088 2.4e-06 57.0 94 35.1
Sed0025737 Sechium edule HOM05D000823 ORTHO05D000088 2.4e-06 57.0 66 39.4
AUR62027225 Chenopodium quinoa HOM05D000823 ORTHO05D000088 3.2e-06 56.6 228 23.2
Sabra02G0101800 Salix brachista HOM05D000823 ORTHO05D000088 3.2e-06 56.6 145 30.3
EL10Ac4g09374 Beta vulgaris HOM05D000823 ORTHO05D000088 4.2e-06 56.2 234 22.6
CAN.G1022.3 Capsicum annuum HOM05D005797 ORTHO05D006479 4.2e-06 56.2 100 34.0
TPR.G15761 Trifolium pratense HOM05D000823 ORTHO05D000088 4.2e-06 56.2 66 37.9
TPR.G18789 Trifolium pratense HOM05D000823 ORTHO05D000088 4.2e-06 56.2 66 37.9
AT4G31640 Arabidopsis thaliana HOM05D000888 ORTHO05D000740 5.5e-06 55.8 195 26.2
Thhalv10004496m.g Eutrema salsugineum HOM05D000823 ORTHO05D000088 5.5e-06 55.8 310 24.2
Psat6g011520 Pisum sativum HOM05D000823 ORTHO05D000088 5.5e-06 55.8 66 37.9
Lj6C562T8 Lonicera japonica HOM05D000823 ORTHO05D000088 7.1e-06 55.5 93 36.6
MBI16_g19885_MAGBIO Magnolia biondii HOM05D000823 ORTHO05D000088 7.1e-06 55.5 150 28.0
Medtr1g021410 Medicago truncatula HOM05D000823 ORTHO05D000088 7.1e-06 55.5 66 37.9
Medtr7g050720 Medicago truncatula HOM05D000395 ORTHO05D000088 7.1e-06 55.5 115 29.6
Aqoxy5G01406 Aquilegia oxysepala HOM05D000395 ORTHO05D000088 9.3e-06 55.1 242 24.4
CiPaw.16G051600 Carya illinoinensis HOM05D000823 ORTHO05D000088 9.3e-06 55.1 127 30.7
Oeu013043.1 Olea europaea HOM05D000823 ORTHO05D000088 9.3e-06 55.1 86 33.7


User provided reference genes

Program Settings