Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G0579 Cannabis sativa HOM05D002468 ORTHO05D005371 3.6e-247 857.8 441 100.0
Prupe.1G214200 Prunus persica HOM05D002468 ORTHO05D005371 1.8e-214 749.2 442 86.7
MD13G1131400 Malus domestica HOM05D002468 ORTHO05D005371 5.2e-214 747.7 442 86.2
MD16G1141700 Malus domestica HOM05D002468 ORTHO05D005371 6.4e-212 740.7 442 85.7
Manes.08G100600 Manihot esculenta HOM05D002468 ORTHO05D005371 6.4e-212 740.7 443 86.0
QL03p049039 Quercus lobata HOM05D002468 ORTHO05D005371 5.4e-211 737.6 441 86.4
Manes.09G188600 Manihot esculenta HOM05D002468 ORTHO05D005371 9.2e-211 736.9 441 85.5
Potri.001G068200 Populus trichocarpa HOM05D002468 ORTHO05D005371 1.2e-210 736.5 445 86.3
Thecc.02G191400 Theobroma cacao HOM05D002468 ORTHO05D005371 2.7e-210 735.3 443 86.0
RcHm_v2.0_Chr4g0428801 Rosa chinensis HOM05D002468 ORTHO05D005371 4.6e-210 734.6 443 84.9
FAN07G2580 Fragaria x ananassa HOM05D002468 ORTHO05D005371 6.6e-209 730.7 444 85.4
FvH4_4g22560 Fragaria vesca HOM05D002468 ORTHO05D005371 8.6e-209 730.3 444 85.6
Atru.chr12.1428 Acer truncatum HOM05D002468 ORTHO05D005371 5.6e-208 727.6 443 85.3
FAN12G2192 Fragaria x ananassa HOM05D002468 ORTHO05D005371 1.6e-207 726.1 439 85.0
Duzib052G0101 Durio zibethinus HOM05D002468 ORTHO05D005371 2.1e-207 725.7 443 84.4
PGR119G1329 Punica granatum HOM05D002468 ORTHO05D005371 2.1e-207 725.7 444 84.2
Duzib132G1053 Durio zibethinus HOM05D002468 ORTHO05D005371 3.6e-207 724.9 444 84.5
CsaV3_4G002210 Cucumis sativus L. HOM05D002468 ORTHO05D005371 4.7e-207 724.5 440 84.8
ClCG07G011940 Citrullus lanatus HOM05D002468 ORTHO05D005371 6.2e-207 724.2 440 85.7
TWI36G1422 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 6.2e-207 724.2 445 85.2
Ciclev10004979m.g Citrus clementina HOM05D002468 ORTHO05D005371 1.8e-206 722.6 444 84.5
CiPaw.06G109900 Carya illinoinensis HOM05D002468 ORTHO05D005371 2.4e-206 722.2 441 84.8
Glyma.08G362900 Glycine max HOM05D002468 ORTHO05D005371 4.0e-206 721.5 444 83.8
FAN17G0051 Fragaria x ananassa HOM05D002468 ORTHO05D005371 6.8e-206 720.7 442 84.6
TWI18G0725 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 1.2e-205 719.9 447 84.8
VMungo1383G1406 Vigna mungo HOM05D002468 ORTHO05D005371 2.0e-205 719.2 442 83.0
arahy.Tifrunner.gnm1.ann1.PCZ0HW Arachis hypogaea HOM05D002468 ORTHO05D005371 3.4e-205 718.4 440 82.7
arahy.Tifrunner.gnm1.ann1.S6Z2J3 Arachis hypogaea HOM05D002468 ORTHO05D005371 3.4e-205 718.4 440 82.7
Cfa009455 Carpinus fangiana HOM05D002468 ORTHO05D005371 4.4e-205 718.0 442 84.8
Gohir.A04G101700 Gossypium hirsutum HOM05D002468 ORTHO05D005371 4.4e-205 718.0 440 84.3
Gorai.012G125900 Gossypium raimondii HOM05D002468 ORTHO05D005371 5.8e-205 717.6 440 84.3
Cpa.g.sc38.67 Carica papaya HOM05D002468 ORTHO05D005371 7.6e-205 717.2 444 83.8
CiPaw.05G100700 Carya illinoinensis HOM05D002468 ORTHO05D005371 7.6e-205 717.2 441 84.1
GSVIVG01001098001 Vitis vinifera HOM05D002468 ORTHO05D005371 7.6e-205 717.2 443 84.0
Gohir.D04G140900 Gossypium hirsutum HOM05D002468 ORTHO05D005371 2.9e-204 715.3 440 84.3
Sabra03G0117600 Salix brachista HOM05D002468 ORTHO05D005371 2.9e-204 715.3 442 83.9
Glyma.18G299100 Glycine max HOM05D002468 ORTHO05D005371 4.9e-204 714.5 444 83.6
Lj1g0025256 Lotus japonicus HOM05D002468 ORTHO05D005371 6.4e-204 714.1 442 82.4
Dinv17539 Davidia involucrata HOM05D002468 ORTHO05D005371 1.1e-203 713.4 441 83.7
Eucgr.G01978 Eucalyptus grandis HOM05D002468 ORTHO05D005371 1.1e-203 713.4 443 83.5
MELO3C017817.2 Cucumis melo HOM05D002468 ORTHO05D005371 1.4e-203 713.0 440 84.5
Dinv03336 Davidia involucrata HOM05D002468 ORTHO05D005371 4.2e-203 711.4 441 83.2
Peaxi162Scf00842g00319 Petunia axillaris HOM05D002468 ORTHO05D005371 7.1e-203 710.7 442 83.0
CSS0032961 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 3.5e-202 708.4 441 83.9
CSS0030444 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 4.6e-202 708.0 441 83.9
CAN.G624.1 Capsicum annuum HOM05D002468 ORTHO05D005371 4.6e-202 708.0 444 82.2
Phvul.008G003600 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 6.0e-202 707.6 448 81.7
TAR629G1443 Trochodendron aralioides HOM05D002468 ORTHO05D005371 7.8e-202 707.2 442 83.9
Ca_04094_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 1.3e-201 706.4 439 82.2
TPR.G9718 Trifolium pratense HOM05D002468 ORTHO05D005371 1.3e-201 706.4 441 82.1
THA.LOC104807252 Tarenaya hassleriana HOM05D002468 ORTHO05D005371 2.3e-201 705.7 440 82.7
Actinidia30583 Actinidia chinensis HOM05D002468 ORTHO05D005371 3.9e-201 704.9 442 82.4
MSTRG.449 Avicennia marina HOM05D002468 ORTHO05D005371 8.7e-201 703.7 445 81.3
Rhsim12G0017100 Rhododendron simsii HOM05D002468 ORTHO05D005371 2.5e-200 702.2 441 83.7
MSTRG.8058 Avicennia marina HOM05D002468 ORTHO05D005371 7.3e-200 700.7 444 81.1
Cc11_g14960 Coffea canephora HOM05D002468 ORTHO05D005371 1.6e-199 699.5 448 82.4
ECA246G0169 Erigeron canadensis HOM05D002468 ORTHO05D005371 1.6e-199 699.5 440 81.8
Sed0000476 Sechium edule HOM05D002468 ORTHO05D005371 2.8e-199 698.7 440 82.5
Lsat_1_v5_gn_3_32661 Lactuca sativa HOM05D002468 ORTHO05D005371 4.7e-199 698.0 440 81.8
EL10Ac6g13612 Beta vulgaris HOM05D002468 ORTHO05D005371 6.2e-199 697.6 440 81.1
HanXRQChr17g0540381 Helianthus annuus HOM05D002468 ORTHO05D005371 6.2e-199 697.6 444 80.9
Medtr7g006560 Medicago truncatula HOM05D002468 ORTHO05D005371 6.2e-199 697.6 442 81.2
Oeu010257.1 Olea europaea HOM05D002468 ORTHO05D005371 8.1e-199 697.2 442 81.4
vmacro01017 Vaccinium macrocarpon HOM05D002468 ORTHO05D005371 1.4e-198 696.4 439 82.2
Solyc11g033288.1 Solanum lycopersicum HOM05D002468 ORTHO05D005371 4.0e-198 694.9 443 81.9
Sopen11g017140 Solanum pennellii HOM05D002468 ORTHO05D005371 5.3e-198 694.5 443 81.9
PGSC0003DMG402028027 Solanum tuberosum HOM05D002468 ORTHO05D005371 6.9e-198 694.1 442 81.0
Lalb_Chr04g0257301 Lupinus albus HOM05D002468 ORTHO05D005371 9.0e-198 693.7 440 82.5
Sed0003563 Sechium edule HOM05D002468 ORTHO05D005371 9.0e-198 693.7 440 82.5
TAR371G0123 Trochodendron aralioides HOM05D002468 ORTHO05D005371 2.0e-197 692.6 420 85.2
Psat3g207000 Pisum sativum HOM05D002468 ORTHO05D005371 1.7e-196 689.5 438 81.1
Hund14581 Selenicereus undatus HOM05D002468 ORTHO05D005371 1.9e-195 686.0 441 79.4
AUR62005716 Chenopodium quinoa HOM05D002468 ORTHO05D005371 3.2e-195 685.3 395 86.6
Sc11g0000080 Simmondsia chinensis HOM05D002468 ORTHO05D005371 7.1e-195 684.1 439 79.5
Ah.03g135540 Amaranthus hybridus HOM05D002468 ORTHO05D005371 9.3e-195 683.7 446 79.1
PSO017G4233 Papaver somniferum HOM05D002468 ORTHO05D005371 2.1e-194 682.6 438 81.5
SalBow2G0960 Salvia bowleyana HOM05D002468 ORTHO05D005371 2.7e-194 682.2 444 79.7
Aqoxy5G03074 Aquilegia oxysepala HOM05D002468 ORTHO05D005371 4.6e-194 681.4 439 80.0
AUR62028839 Chenopodium quinoa HOM05D002468 ORTHO05D005371 4.6e-194 681.4 395 85.8
HanXRQChr06g0175161 Helianthus annuus HOM05D002468 ORTHO05D005371 4.6e-194 681.4 441 79.6
BraA10t44546Z Brassica rapa HOM05D002468 ORTHO05D005371 8.7e-193 677.2 445 80.0
Thhalv10013572m.g Eutrema salsugineum HOM05D002468 ORTHO05D005371 3.3e-192 675.2 447 79.4
Carub.0006s1158 Capsella rubella HOM05D002468 ORTHO05D005371 5.6e-192 674.5 440 80.2
A10p24820 Brassica napus HOM05D002468 ORTHO05D005371 1.3e-191 673.3 443 80.1
DCAR_024636 Daucus carota HOM05D002468 ORTHO05D005371 1.3e-191 673.3 445 80.2
C09p63670 Brassica napus HOM05D002468 ORTHO05D005371 2.1e-191 672.5 445 79.3
BolC9t59208H Brassica oleracea HOM05D002468 ORTHO05D005371 2.1e-191 672.5 445 79.3
PSO478G3355 Papaver somniferum HOM05D002468 ORTHO05D005371 6.2e-191 671.0 439 80.4
Haze_12509 Corylus avellana HOM05D002468 ORTHO05D005371 8.1e-191 670.6 414 83.3
AL6G24040 Arabidopsis lyrata HOM05D002468 ORTHO05D005371 2.4e-190 669.1 440 80.0
AT5G13420 Arabidopsis thaliana HOM05D002468 ORTHO05D005371 9.0e-190 667.2 446 80.0
BcaC04g19118 Brassica carinata HOM05D002468 ORTHO05D005371 1.5e-189 666.4 447 78.5
C02p06130 Brassica napus HOM05D002468 ORTHO05D005371 2.0e-189 666.0 446 78.5
BolC2t06554H Brassica oleracea HOM05D002468 ORTHO05D005371 2.0e-189 666.0 446 78.5
Migut.K01049 Erythranthe guttata HOM05D002468 ORTHO05D005371 9.9e-189 663.7 445 78.9
CARHR200010 Cardamine hirsuta HOM05D002468 ORTHO05D005371 1.7e-188 662.9 446 79.1
MBI07_g35982_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 3.8e-188 661.8 442 78.1
Sp6g30600 Schrenkiella parvula HOM05D002468 ORTHO05D005371 1.1e-187 660.2 441 78.7
unitig_8.g2893 Utricularia gibba HOM05D002468 ORTHO05D005371 5.4e-187 657.9 432 79.2
SGA_v2.0_scaffold258G45768 Striga asiatica HOM05D002468 ORTHO05D005371 2.1e-186 656.0 448 78.1
A02p01910 Brassica napus HOM05D002468 ORTHO05D005371 2.7e-186 655.6 421 80.8
BraA02t05164Z Brassica rapa HOM05D002468 ORTHO05D005371 2.7e-186 655.6 421 80.8
BraA03t09933Z Brassica rapa HOM05D002468 ORTHO05D005371 3.5e-186 655.2 444 77.9
A03p05960 Brassica napus HOM05D002468 ORTHO05D005371 6.0e-186 654.4 444 77.9
Os01g0926300 Oryza sativa ssp. japonica HOM05D002468 ORTHO05D005371 1.0e-185 653.7 433 77.6
Zm00001eb363880 Zea mays HOM05D002468 ORTHO05D005371 2.5e-184 649.0 439 76.3
C03p07000 Brassica napus HOM05D002468 ORTHO05D005371 7.4e-184 647.5 445 76.6
BolC3t13199H Brassica oleracea HOM05D002468 ORTHO05D005371 7.4e-184 647.5 445 76.6
HanXRQChr06g0175171 Helianthus annuus HOM05D002468 ORTHO05D005371 9.6e-184 647.1 391 82.4
Zm00001eb142730 Zea mays HOM05D002468 ORTHO05D005371 8.1e-183 644.0 439 75.9
ATR0582G307 Amborella trichopoda HOM05D002468 ORTHO05D005371 1.1e-182 643.7 381 84.3
CDE05G3080 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 1.8e-182 642.9 403 80.6
CSS0032033 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 5.3e-182 641.3 391 84.7
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 3.4e-181 638.6 421 77.7
MBI07_g48060_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 2.9e-180 635.6 484 70.9
Nitab4.5_0004349g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 1.1e-179 633.6 440 77.3
CDE05G2158 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 7.1e-179 630.9 433 75.5
Aa31LG3G14290 Aethionema arabicum HOM05D002468 ORTHO05D005371 1.6e-175 619.8 469 69.9
Actinidia22113 Actinidia chinensis HOM05D002468 ORTHO05D005371 1.5e-173 613.2 380 82.9
BcaB01g05361 Brassica carinata HOM05D002468 ORTHO05D005371 1.3e-169 600.1 445 72.6
Nitab4.5_0002569g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 1.5e-168 596.7 444 73.4
Potri.003G161900 Populus trichocarpa HOM05D002468 ORTHO05D005371 1.0e-164 583.9 378 81.0
BcaNung01156 Brassica carinata HOM05D002468 ORTHO05D005371 8.8e-161 570.9 397 77.3
Lalb_Chr10g0091121 Lupinus albus HOM05D002468 ORTHO05D005371 5.9e-157 558.1 362 81.8
AagrBONN_evm.TU.Sc2ySwM_228.2334 Anthoceros agrestis HOM05D002468 ORTHO05D005371 4.7e-154 548.5 396 69.9
Lj4g0027400 Lotus japonicus HOM05D002468 ORTHO05D005371 7.9e-154 547.7 372 73.1
Lj6C840T10 Lonicera japonica HOM05D002468 ORTHO05D005371 1.4e-153 547.0 307 90.6
Lalb_Chr13g0296941 Lupinus albus HOM05D002468 ORTHO05D005371 5.3e-150 535.0 400 65.2
Glyma.05G199800 Glycine max HOM05D002468 ORTHO05D005371 6.5e-148 528.1 365 70.4
Ca_16823_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 1.0e-145 520.8 370 68.9
Medtr8g096130 Medicago truncatula HOM05D002468 ORTHO05D005371 1.5e-144 516.9 375 68.8
Phvul.002G281000 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 3.7e-143 512.3 379 66.5
Mapoly0092s0071 Marchantia polymorpha HOM05D002468 ORTHO05D005371 2.4e-142 509.6 377 67.9
SMO367G1271 Selaginella moellendorffii HOM05D002468 ORTHO05D005371 5.3e-142 508.4 361 71.2
TPR.G12900 Trifolium pratense HOM05D002468 ORTHO05D005371 7.0e-142 508.1 389 66.3
VMungo0251G2964 Vigna mungo HOM05D002468 ORTHO05D001247 9.1e-142 507.7 366 66.7
Mapoly0092s0072 Marchantia polymorpha HOM05D002468 ORTHO05D005371 2.6e-141 506.1 374 66.8
Mapoly0092s0073 Marchantia polymorpha HOM05D002468 ORTHO05D005371 3.5e-141 505.8 374 66.8
ClCG06G013000 Citrullus lanatus HOM05D002468 ORTHO05D005371 2.3e-137 493.0 380 63.4
Pp3c26_4790 Physcomitrium patens HOM05D002468 ORTHO05D005371 2.3e-137 493.0 382 64.7
SHI04110 Sapria himalayana HOM05D002468 ORTHO05D005371 5.3e-134 481.9 317 79.2
MELO3C017506.2 Cucumis melo HOM05D002468 ORTHO05D005371 2.0e-133 479.9 381 62.5
Cpa.g.sc2215.1 Carica papaya HOM05D002468 ORTHO05D005371 4.0e-129 465.7 359 63.8
CBR_g51451 Chara braunii HOM05D002468 ORTHO05D005371 1.2e-117 427.6 365 62.2
arahy.Tifrunner.gnm1.ann1.93S04R Arachis hypogaea HOM05D002468 ORTHO05D005371 6.6e-100 368.6 370 55.4
Eucgr.H00650 Eucalyptus grandis HOM05D002468 ORTHO05D005371 2.4e-94 350.1 302 61.6
Lj2g0022028 Lotus japonicus HOM05D002468 ORTHO05D005371 1.9e-83 313.9 215 74.4
BolC3t13348H Brassica oleracea HOM05D002468 ORTHO05D005371 8.4e-71 271.9 187 78.1
Mapoly0189s0003 Marchantia polymorpha HOM05D002468 ORTHO05D005371 3.9e-68 263.1 328 44.8
C03p08440 Brassica napus HOM05D002468 ORTHO05D005371 2.7e-61 240.4 139 88.5
arahy.Tifrunner.gnm1.ann1.1XR5VC Arachis hypogaea HOM05D002468 ORTHO05D005371 5.1e-60 236.1 199 61.3
HanXRQChr10g0304361 Helianthus annuus HOM05D002468 ORTHO05D005371 4.1e-57 226.5 123 86.2
Glyma.15G205533 Glycine max HOM05D002468 ORTHO05D005371 2.6e-56 223.8 160 70.0
CsaV3_1G031170 Cucumis sativus L. HOM05D002468 ORTHO05D005371 1.8e-41 174.5 162 56.2
Glyma.08G007300 Glycine max HOM05D002468 ORTHO05D005371 2.9e-39 167.2 119 71.4
BcaB01g05316 Brassica carinata HOM05D000877 ORTHO05D012137 1.4e-36 158.3 165 57.0
BolC3t13237H Brassica oleracea HOM05D000877 ORTHO05D012137 4.1e-33 146.7 81 88.9
Lalb_Chr10g0091111 Lupinus albus HOM05D002468 ORTHO05D005371 5.9e-32 142.9 82 87.8
SGA_v2.0_scaffold4G02418 Striga asiatica HOM05D002468 ORTHO05D051394 5.2e-28 129.8 112 58.9
CsaV3_1G031160 Cucumis sativus L. HOM05D002468 ORTHO05D005371 2.6e-27 127.5 80 72.5
SEGI_31132 Sequoiadendron giganteum HOM05D002468 ORTHO05D005371 1.2e-19 102.1 74 63.5
SGA_v2.0_scaffold528G52739 Striga asiatica HOM05D002468 ORTHO05D051394 4.8e-18 96.7 51 82.4
Pp3c3_15390 Physcomitrium patens HOM05D002468 ORTHO05D005371 1.7e-15 88.2 94 51.1
vmacro08874 Vaccinium macrocarpon HOM05D002468 ORTHO05D013153 1.1e-06 58.9 141 35.5


User provided reference genes

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