Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G0578 Cannabis sativa HOM05D007757 ORTHO05D009619 1.6e-60 236.1 137 100.0
Prupe.1G311500 Prunus persica HOM05D007757 ORTHO05D009619 1.6e-15 86.7 61 63.9
MD13G1041700 Malus domestica HOM05D007757 ORTHO05D009619 2.2e-14 82.8 60 60.0
TWI75G0183 Tripterygium wilfordii HOM05D007757 ORTHO05D009619 1.1e-13 80.5 67 58.2
Duzib248G1397 Durio zibethinus HOM05D007757 ORTHO05D009619 1.9e-13 79.7 60 60.0
COL.COLO4_37757 Corchorus olitorius HOM05D007757 ORTHO05D009619 3.2e-13 79.0 60 58.3
Thecc.02G230200 Theobroma cacao HOM05D007757 ORTHO05D009619 7.2e-13 77.8 60 60.0
Haze_17487 Corylus avellana HOM05D007757 ORTHO05D009619 9.4e-13 77.4 59 64.4
Potri.010G124700 Populus trichocarpa HOM05D007757 ORTHO05D009619 2.1e-12 76.3 61 55.7
Lalb_Chr02g0145961 Lupinus albus HOM05D007757 ORTHO05D009619 6.1e-12 74.7 60 58.3
CiPaw.15G085600 Carya illinoinensis HOM05D007757 ORTHO05D009619 1.0e-11 73.9 61 55.7
Manes.06G067700 Manihot esculenta HOM05D007757 ORTHO05D009619 1.4e-11 73.6 60 56.7
MD16G1042600 Malus domestica HOM05D007757 ORTHO05D009619 2.3e-11 72.8 54 57.4
Gohir.D04G138100 Gossypium hirsutum HOM05D007757 ORTHO05D009619 3.0e-11 72.4 60 53.3
Gorai.012G123000 Gossypium raimondii HOM05D007757 ORTHO05D009619 3.0e-11 72.4 60 53.3
Sabra10G0094600 Salix brachista HOM05D007757 ORTHO05D009619 3.0e-11 72.4 56 55.4
Lalb_Chr06g0166051 Lupinus albus HOM05D007757 ORTHO05D009619 6.8e-11 71.2 62 58.1
Nn3g17018 Nelumbo nucifera HOM05D021434 ORTHO05D009619 6.8e-11 71.2 66 48.5
Medtr1g110790 Medicago truncatula HOM05D007757 ORTHO05D009619 1.5e-10 70.1 56 57.1
Actinidia16654 Actinidia chinensis HOM05D007757 ORTHO05D009619 2.0e-10 69.7 65 52.3
Ca_11172_v3 Cicer arietinum L. HOM05D007757 ORTHO05D009619 4.4e-10 68.6 57 52.6
Nn4g23846 Nelumbo nucifera HOM05D021434 ORTHO05D009619 5.7e-10 68.2 66 47.0
Rhsim09G0107900 Rhododendron simsii HOM05D007757 ORTHO05D009619 5.7e-10 68.2 66 50.0
THA.LOC104800008 Tarenaya hassleriana HOM05D007757 ORTHO05D009619 7.5e-10 67.8 46 67.4
Actinidia14892 Actinidia chinensis HOM05D007757 ORTHO05D009619 9.8e-10 67.4 58 51.7
TPR.G1503 Trifolium pratense HOM05D007757 ORTHO05D009619 1.3e-09 67.0 50 58.0
VMungo0720G1194 Vigna mungo HOM05D007757 ORTHO05D009619 1.3e-09 67.0 62 53.2
Cpa.g.sc1.36 Carica papaya HOM05D007757 ORTHO05D009619 1.7e-09 66.6 57 59.6
Peaxi162Scf00382g00073 Petunia axillaris HOM05D007757 ORTHO05D009619 3.7e-09 65.5 64 46.9
FvH4_4g27340 Fragaria vesca HOM05D007757 ORTHO05D009619 4.8e-09 65.1 74 48.6
FAN12G3266 Fragaria x ananassa HOM05D007757 ORTHO05D009619 4.8e-09 65.1 74 48.6
FAN12G3307 Fragaria x ananassa HOM05D007757 ORTHO05D009619 4.8e-09 65.1 74 48.6
THA.LOC104821934 Tarenaya hassleriana HOM05D007757 ORTHO05D009619 4.8e-09 65.1 46 63.0
Glyma.10G274100 Glycine max HOM05D007757 ORTHO05D009619 6.3e-09 64.7 55 58.2
Peaxi162Scf00382g00086 Petunia axillaris HOM05D007757 ORTHO05D009619 6.3e-09 64.7 64 46.9
Phvul.007G027400 Phaseolus vulgaris HOM05D007757 ORTHO05D009619 8.3e-09 64.3 62 53.2
PGSC0003DMG400014580 Solanum tuberosum HOM05D007757 ORTHO05D009619 8.3e-09 64.3 92 39.1
Psat6g227960 Pisum sativum HOM05D007757 ORTHO05D009619 1.4e-08 63.5 139 32.4
BcaC03g14960 Brassica carinata HOM05D007757 ORTHO05D009619 1.8e-08 63.2 48 64.6
C02p24780 Brassica napus HOM05D007757 ORTHO05D009619 1.8e-08 63.2 48 64.6
BolC2t08570H Brassica oleracea HOM05D007757 ORTHO05D009619 1.8e-08 63.2 48 64.6
Cc11_g10120 Coffea canephora HOM05D007757 ORTHO05D009619 1.8e-08 63.2 73 45.2
FAN07G0332 Fragaria x ananassa HOM05D007757 ORTHO05D009619 1.8e-08 63.2 74 48.6
DCAR_030156 Daucus carota HOM05D007757 ORTHO05D009619 2.4e-08 62.8 69 50.7
Gohir.D01G175600 Gossypium hirsutum HOM05D007757 ORTHO05D009619 3.1e-08 62.4 51 52.9
Gorai.002G217900 Gossypium raimondii HOM05D007757 ORTHO05D009619 3.1e-08 62.4 51 52.9
Glyma.20G115900 Glycine max HOM05D007757 ORTHO05D009619 4.1e-08 62.0 55 56.4
RcHm_v2.0_Chr4g0435141 Rosa chinensis HOM05D007757 ORTHO05D009619 4.1e-08 62.0 44 63.6
Sopen05g005100 Solanum pennellii HOM05D007757 ORTHO05D009619 4.1e-08 62.0 59 49.2
Nitab4.5_0000791g0090 Nicotiana tabacum HOM05D007757 ORTHO05D009619 5.4e-08 61.6 56 50.0
Solyc05g009340.1 Solanum lycopersicum HOM05D007757 ORTHO05D009619 5.4e-08 61.6 60 48.3
CAN.G610.82 Capsicum annuum HOM05D007757 ORTHO05D009619 7.0e-08 61.2 71 39.4
BcaB05g24389 Brassica carinata HOM05D007757 ORTHO05D009619 9.1e-08 60.8 48 62.5
BraA02t06576Z Brassica rapa HOM05D007757 ORTHO05D009619 9.1e-08 60.8 48 62.5
Sp5g23570 Schrenkiella parvula HOM05D007757 ORTHO05D009619 1.2e-07 60.5 48 60.4
BcaB03g15824 Brassica carinata HOM05D007757 ORTHO05D009619 1.6e-07 60.1 47 57.4
BcaC08g46271 Brassica carinata HOM05D007757 ORTHO05D009619 2.0e-07 59.7 47 57.4
A07p34900 Brassica napus HOM05D007757 ORTHO05D009619 2.0e-07 59.7 47 57.4
C06p41430 Brassica napus HOM05D007757 ORTHO05D009619 2.0e-07 59.7 47 57.4
BolC6t39280H Brassica oleracea HOM05D007757 ORTHO05D009619 2.0e-07 59.7 47 57.4
A02p15100 Brassica napus HOM05D007757 ORTHO05D009619 4.5e-07 58.5 48 60.4
CARHR061280 Cardamine hirsuta HOM05D007757 ORTHO05D009619 4.5e-07 58.5 42 61.9
Sc11g0003440 Simmondsia chinensis HOM05D007757 ORTHO05D009619 7.7e-07 57.8 76 43.4
Thhalv10019384m.g Eutrema salsugineum HOM05D007757 ORTHO05D009619 1.7e-06 56.6 41 58.5
Ciclev10017153m.g Citrus clementina HOM05D007757 ORTHO05D009619 5.0e-06 55.1 64 51.6
Carub.0002s1501 Capsella rubella HOM05D007757 ORTHO05D009619 6.6e-06 54.7 47 51.1
MSTRG.2233 Avicennia marina HOM05D007757 ORTHO05D009619 8.6e-06 54.3 50 50.0


User provided reference genes

Program Settings