Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G0515 Cannabis sativa HOM05D006027 ORTHO05D007604 1.2e-100 369.8 183 100.0
CANSAT01G2333 Cannabis sativa HOM05D006027 ORTHO05D007604 2.0e-98 362.5 183 99.5
Prupe.8G215000 Prunus persica HOM05D006027 ORTHO05D007604 1.0e-75 287.0 183 77.6
QL09p041558 Quercus lobata HOM05D006027 ORTHO05D007604 8.9e-75 283.9 183 80.9
GSVIVG01028434001 Vitis vinifera HOM05D006027 ORTHO05D007604 9.8e-74 280.4 183 75.4
MD05G1188500 Malus domestica HOM05D006027 ORTHO05D007604 1.3e-73 280.0 183 76.5
Atru.chr5.1865 Acer truncatum HOM05D006027 ORTHO05D007604 2.9e-73 278.9 183 75.4
TAR633G0397 Trochodendron aralioides HOM05D006027 ORTHO05D007604 3.7e-73 278.5 185 77.3
Thecc.01G249800 Theobroma cacao HOM05D006027 ORTHO05D007604 4.9e-73 278.1 183 77.6
MD10G1176000 Malus domestica HOM05D006027 ORTHO05D007604 1.1e-72 276.9 183 76.0
FAN27G2528 Fragaria x ananassa HOM05D006027 ORTHO05D007604 1.8e-72 276.2 184 75.5
FAN15G2830 Fragaria x ananassa HOM05D006027 ORTHO05D007604 2.4e-72 275.8 184 75.5
Gohir.A07G152700 Gossypium hirsutum HOM05D006027 ORTHO05D007604 2.4e-72 275.8 183 77.6
Manes.12G038000 Manihot esculenta HOM05D006027 ORTHO05D007604 7.0e-72 274.2 183 74.9
Gorai.001G182100 Gossypium raimondii HOM05D006027 ORTHO05D007604 9.2e-72 273.9 183 77.0
Gohir.D07G158900 Gossypium hirsutum HOM05D006027 ORTHO05D007604 1.6e-71 273.1 183 77.0
Aqoxy5G00130 Aquilegia oxysepala HOM05D006027 ORTHO05D007604 2.0e-71 272.7 185 74.6
FvH4_2g20470 Fragaria vesca HOM05D006027 ORTHO05D007604 2.7e-71 272.3 184 74.5
FAN24G3422 Fragaria x ananassa HOM05D006027 ORTHO05D007604 2.7e-71 272.3 184 74.5
Manes.13G039500 Manihot esculenta HOM05D006027 ORTHO05D007604 3.5e-71 271.9 183 73.2
Eucgr.K01424 Eucalyptus grandis HOM05D006027 ORTHO05D007604 7.8e-71 270.8 183 73.8
Haze_24710 Corylus avellana HOM05D006027 ORTHO05D007604 2.3e-70 269.2 188 73.9
Sabra02G0194900 Salix brachista HOM05D006027 ORTHO05D007604 2.3e-70 269.2 183 73.2
Dinv43066 Davidia involucrata HOM05D006027 ORTHO05D007604 3.0e-70 268.9 183 74.9
Potri.002G256400 Populus trichocarpa HOM05D006027 ORTHO05D007604 3.0e-70 268.9 183 73.2
Nitab4.5_0002435g0010 Nicotiana tabacum HOM05D006027 ORTHO05D007604 8.6e-70 267.3 183 75.4
Sopen09g025650 Solanum pennellii HOM05D006027 ORTHO05D007604 1.1e-69 266.9 183 76.0
CSS0012566 Camellia sinensis var. sinensis HOM05D006027 ORTHO05D007604 1.5e-69 266.5 182 72.5
Duzib138G0534 Durio zibethinus HOM05D006027 ORTHO05D007604 1.9e-69 266.2 184 75.5
Nitab4.5_0000845g0140 Nicotiana tabacum HOM05D006027 ORTHO05D007604 3.3e-69 265.4 183 74.9
Solyc09g064500.3 Solanum lycopersicum HOM05D006027 ORTHO05D007604 3.3e-69 265.4 183 75.4
Phvul.007G153500 Phaseolus vulgaris HOM05D006027 ORTHO05D007604 5.6e-69 264.6 183 76.0
PGSC0003DMG400008585 Solanum tuberosum HOM05D006027 ORTHO05D007604 5.6e-69 264.6 183 74.9
Glyma.13G127200 Glycine max HOM05D006027 ORTHO05D007604 7.3e-69 264.2 183 76.5
Duzib211G0648 Durio zibethinus HOM05D006027 ORTHO05D007604 9.5e-69 263.8 183 73.8
TAR362G0914 Trochodendron aralioides HOM05D006027 ORTHO05D007604 9.5e-69 263.8 185 73.5
CSS0010160 Camellia sinensis var. sinensis HOM05D006027 ORTHO05D007604 1.2e-68 263.5 182 71.4
DCAR_000568 Daucus carota HOM05D006027 ORTHO05D007604 1.2e-68 263.5 183 71.6
Nn3g19801 Nelumbo nucifera HOM05D006027 ORTHO05D007604 1.2e-68 263.5 184 75.0
CAN.G536.12 Capsicum annuum HOM05D006027 ORTHO05D007604 2.8e-68 262.3 183 74.9
PSO764G0320 Papaver somniferum HOM05D006027 ORTHO05D007604 4.7e-68 261.5 185 71.9
PGR044G2038 Punica granatum HOM05D006027 ORTHO05D007604 4.7e-68 261.5 183 72.7
Lj5g0017558 Lotus japonicus HOM05D006027 ORTHO05D007604 2.3e-67 259.2 183 74.9
Glyma.10G040600 Glycine max HOM05D006027 ORTHO05D007604 5.2e-67 258.1 183 73.8
VMungo0720G1620 Vigna mungo HOM05D006027 ORTHO05D007604 8.9e-67 257.3 183 73.2
Cfa002488 Carpinus fangiana HOM05D006027 ORTHO05D007604 2.0e-66 256.1 171 75.4
Lalb_Chr06g0170731 Lupinus albus HOM05D006027 ORTHO05D007604 2.0e-66 256.1 183 72.7
arahy.Tifrunner.gnm1.ann1.72UZ71 Arachis hypogaea HOM05D006027 ORTHO05D007604 7.5e-66 254.2 183 73.2
arahy.Tifrunner.gnm1.ann1.FRV526 Arachis hypogaea HOM05D006027 ORTHO05D007604 7.5e-66 254.2 183 73.2
PSO832G0858 Papaver somniferum HOM05D006027 ORTHO05D007604 7.5e-66 254.2 185 70.8
vmacro14793 Vaccinium macrocarpon HOM05D006027 ORTHO05D007604 7.5e-66 254.2 183 70.5
Lalb_Chr02g0152741 Lupinus albus HOM05D006027 ORTHO05D007604 1.7e-65 253.1 183 72.1
HanXRQChr01g0014971 Helianthus annuus HOM05D006027 ORTHO05D007604 3.7e-65 251.9 183 69.4
MELO3C022393.2 Cucumis melo HOM05D006027 ORTHO05D007604 6.4e-65 251.1 186 71.0
Migut.D00479 Erythranthe guttata HOM05D006027 ORTHO05D007604 1.4e-64 250.0 185 71.4
Ca_09646_v3 Cicer arietinum L. HOM05D006027 ORTHO05D007604 1.9e-64 249.6 185 74.1
Actinidia23700 Actinidia chinensis HOM05D006027 ORTHO05D007604 2.4e-64 249.2 183 71.0
TWI18G0031 Tripterygium wilfordii HOM05D006027 ORTHO05D007604 3.2e-64 248.8 183 68.9
SGA_v2.0_scaffold1G00660 Striga asiatica HOM05D006027 ORTHO05D007604 7.0e-64 247.7 188 70.7
Actinidia09513 Actinidia chinensis HOM05D006027 ORTHO05D007604 1.6e-63 246.5 183 69.9
Lsat_1_v5_gn_5_181161 Lactuca sativa HOM05D006027 ORTHO05D007604 1.6e-63 246.5 184 70.1
TPR.G5919 Trifolium pratense HOM05D006027 ORTHO05D007604 2.0e-63 246.1 182 73.1
Medtr1g069465 Medicago truncatula HOM05D006027 ORTHO05D007604 2.7e-63 245.7 184 72.8
Oeu052083.1 Olea europaea HOM05D006027 ORTHO05D007604 3.5e-63 245.4 145 84.1
Cc01_g17770 Coffea canephora HOM05D006027 ORTHO05D007604 1.0e-62 243.8 184 70.1
Oeu015437.1 Olea europaea HOM05D006027 ORTHO05D007604 1.3e-62 243.4 151 78.8
Lj1C74G4 Lonicera japonica HOM05D006027 ORTHO05D007604 2.3e-62 242.7 153 80.4
ClCG06G001400 Citrullus lanatus HOM05D006027 ORTHO05D007604 3.0e-62 242.3 188 69.1
VMungo1383G1953 Vigna mungo HOM05D006027 ORTHO05D007604 5.0e-62 241.5 182 68.7
Psat6g062520 Pisum sativum HOM05D006027 ORTHO05D007604 2.5e-61 239.2 186 72.0
Ciclev10022322m.g Citrus clementina HOM05D006027 ORTHO05D007604 3.3e-61 238.8 171 68.4
Phvul.001G165200 Phaseolus vulgaris HOM05D006027 ORTHO05D007604 4.3e-61 238.4 182 69.8
AUR62025437 Chenopodium quinoa HOM05D006027 ORTHO05D007604 1.2e-60 236.9 184 66.8
CDE02G4364 Ceratophyllum demersum HOM05D006027 ORTHO05D007604 1.1e-59 233.8 184 67.9
Rhsim01G0260300 Rhododendron simsii HOM05D006027 ORTHO05D007604 3.1e-59 232.3 152 74.3
EL10Ac7g17691 Beta vulgaris HOM05D006027 ORTHO05D007604 2.6e-58 229.2 200 62.0
Os01g0938100 Oryza sativa ssp. japonica HOM05D006027 ORTHO05D007604 4.4e-58 228.4 182 65.9
MBI07_g08912_MAGBIO Magnolia biondii HOM05D006027 ORTHO05D007604 9.9e-58 227.3 187 65.2
Hund18287 Selenicereus undatus HOM05D006027 ORTHO05D007604 1.7e-57 226.5 183 64.5
COL.COLO4_10205 Corchorus olitorius HOM05D006027 ORTHO05D007604 2.2e-57 226.1 114 95.6
ECA248G3782 Erigeron canadensis HOM05D006027 ORTHO05D007604 6.4e-57 224.6 148 73.6
Sed0007731 Sechium edule HOM05D006027 ORTHO05D007604 1.1e-56 223.8 146 74.0
A03p58340 Brassica napus HOM05D006027 ORTHO05D007604 7.1e-56 221.1 185 61.1
Peaxi162Scf00043g00255 Petunia axillaris HOM05D006027 ORTHO05D007604 9.2e-56 220.7 116 90.5
Zm00001eb141870 Zea mays HOM05D006027 ORTHO05D007604 3.5e-55 218.8 186 66.7
AUR62008802 Chenopodium quinoa HOM05D006027 ORTHO05D007604 1.0e-54 217.2 132 78.0
Cpa.g.sc87.33 Carica papaya HOM05D006027 ORTHO05D007604 1.7e-54 216.5 115 89.6
SalBow4G0311 Salvia bowleyana HOM05D006027 ORTHO05D007604 2.3e-54 216.1 116 89.7
Sp7g26630 Schrenkiella parvula HOM05D006027 ORTHO05D007604 3.0e-54 215.7 175 64.6
HPP92_027289 Vanilla planifolia HOM05D006027 ORTHO05D007604 3.9e-54 215.3 152 67.1
BcaC06g32609 Brassica carinata HOM05D006027 ORTHO05D007604 5.1e-54 214.9 173 62.4
Zm00001eb141830 Zea mays HOM05D006027 ORTHO05D007604 5.1e-54 214.9 164 71.3
BraA01t00872Z Brassica rapa HOM05D006027 ORTHO05D007604 6.6e-54 214.5 156 67.9
Thhalv10026347m.g Eutrema salsugineum HOM05D006027 ORTHO05D007604 8.6e-54 214.2 187 60.4
Sc05g0002880 Simmondsia chinensis HOM05D006027 ORTHO05D007604 8.6e-54 214.2 175 65.7
A01p09280 Brassica napus HOM05D006027 ORTHO05D007604 1.9e-53 213.0 185 58.4
Aa31LG2G21720 Aethionema arabicum HOM05D006027 ORTHO05D007604 2.5e-53 212.6 155 67.7
AL7G23880 Arabidopsis lyrata HOM05D006027 ORTHO05D007604 7.3e-53 211.1 183 59.0
HPP92_008468 Vanilla planifolia HOM05D006027 ORTHO05D007604 7.3e-53 211.1 183 59.0
C01p10860 Brassica napus HOM05D006027 ORTHO05D007604 9.5e-53 210.7 185 58.4
CARHR236440 Cardamine hirsuta HOM05D006027 ORTHO05D007604 9.5e-53 210.7 155 65.8
AT4G28660 Arabidopsis thaliana HOM05D006027 ORTHO05D007604 1.2e-52 210.3 183 59.0
BcaNung04696 Brassica carinata HOM05D006027 ORTHO05D007604 1.2e-52 210.3 185 58.9
C07p56360 Brassica napus HOM05D006027 ORTHO05D007604 1.2e-52 210.3 157 66.2
unitig_8.g3074 Utricularia gibba HOM05D006027 ORTHO05D007604 1.2e-52 210.3 185 60.5
BolC7t46115H Brassica oleracea HOM05D006027 ORTHO05D007604 1.6e-52 209.9 157 66.2
Carub.0007s1200 Capsella rubella HOM05D006027 ORTHO05D007604 1.6e-52 209.9 157 66.9
THA.LOC104814531 Tarenaya hassleriana HOM05D006027 ORTHO05D007604 2.1e-52 209.5 184 59.8
BolC1t01050H Brassica oleracea HOM05D000022 ORTHO05D000744 1.5e-50 203.4 178 59.0
THA.LOC104820068 Tarenaya hassleriana HOM05D006027 ORTHO05D007604 2.6e-50 202.6 184 59.8
ATR0787G157 Amborella trichopoda HOM05D006027 ORTHO05D007604 1.7e-49 199.9 115 81.7
CiPaw.03G271300 Carya illinoinensis HOM05D006027 ORTHO05D007604 8.4e-49 197.6 183 61.2
Mapoly0042s0085 Marchantia polymorpha HOM05D006027 ORTHO05D007604 1.5e-45 186.8 148 62.2
SMO347G0509 Selaginella moellendorffii HOM05D006027 ORTHO05D007604 7.6e-42 174.5 115 72.2
Pp3c7_5450 Physcomitrium patens HOM05D006027 ORTHO05D007604 9.9e-42 174.1 116 69.0
AagrBONN_evm.TU.Sc2ySwM_340.224 Anthoceros agrestis HOM05D006027 ORTHO05D007604 4.9e-41 171.8 109 71.6
Pp3c11_18280 Physcomitrium patens HOM05D006027 ORTHO05D007604 1.2e-39 167.2 116 64.7
Ah.15g092630 Amaranthus hybridus HOM05D006027 ORTHO05D007604 9.6e-37 157.5 125 63.2
CBR_g12742 Chara braunii HOM05D006027 ORTHO05D007604 2.1e-36 156.4 110 63.6
Cre10.g440450 Chlamydomonas reinhardtii HOM05D006027 ORTHO05D007604 2.2e-33 146.4 109 59.6
MCO16G336 Micromonas commoda HOM05D006027 ORTHO05D007604 2.2e-33 146.4 117 54.7
PRCOL_00005949 Prasinoderma coloniale HOM05D006027 ORTHO05D007604 1.4e-32 143.7 106 58.5
RcHm_v2.0_Chr6g0286561 Rosa chinensis HOM05D006027 ORTHO05D007604 9.6e-29 131.0 105 64.8
CSS0017427 Camellia sinensis var. sinensis HOM05D006027 ORTHO05D007604 3.7e-28 129.0 173 45.7
Zm00001eb141750 Zea mays HOM05D006027 ORTHO05D007604 9.3e-24 114.4 59 89.8
Zm00001eb141790 Zea mays HOM05D006027 ORTHO05D007604 9.3e-24 114.4 59 89.8
CDE09G0356 Ceratophyllum demersum HOM05D006027 ORTHO05D007604 3.1e-19 99.4 109 55.0
TAR362G0025 Trochodendron aralioides HOM05D006027 ORTHO05D007604 4.0e-19 99.0 66 74.2
Zm00001eb141760 Zea mays HOM05D006027 ORTHO05D007604 5.5e-16 88.6 54 75.9
Zm00001eb141840 Zea mays HOM05D042765 ORTHO05D443703 8.8e-06 54.7 31 83.9


User provided reference genes

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