Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G0497 Cannabis sativa HOM05D004964 ORTHO05D005918 1.1e-220 769.6 388 100.0
Prupe.6G350300 Prunus persica HOM05D004964 ORTHO05D005918 3.6e-118 429.1 397 57.4
MD04G1230400 Malus domestica HOM05D004964 ORTHO05D005918 5.2e-117 425.2 399 56.6
RcHm_v2.0_Chr3g0449661 Rosa chinensis HOM05D004964 ORTHO05D005918 4.1e-114 415.6 397 57.4
FvH4_6g01921 Fragaria vesca HOM05D004964 ORTHO05D005918 1.6e-110 403.7 395 55.7
QL03p029942 Quercus lobata HOM05D004964 ORTHO05D005918 1.1e-109 401.0 383 55.6
FAN14G2205 Fragaria x ananassa HOM05D004964 ORTHO05D005918 1.8e-109 400.2 395 55.4
FAN02G1272 Fragaria x ananassa HOM05D004964 ORTHO05D005918 2.6e-108 396.4 393 56.0
QL03p029974 Quercus lobata HOM05D004964 ORTHO05D005918 4.4e-108 395.6 384 56.8
CSS0014360 Camellia sinensis var. sinensis HOM05D004964 ORTHO05D005918 5.8e-108 395.2 407 54.1
Cfa006356 Carpinus fangiana HOM05D004964 ORTHO05D005918 1.3e-107 394.0 394 57.6
QL03p030425 Quercus lobata HOM05D004964 ORTHO05D005918 3.2e-106 389.4 381 57.0
CiPaw.07G072600 Carya illinoinensis HOM05D004964 ORTHO05D005918 7.1e-106 388.3 396 56.8
Thecc.05G270700 Theobroma cacao HOM05D004964 ORTHO05D005918 4.6e-105 385.6 410 55.1
Sabra13G0043100 Salix brachista HOM05D004964 ORTHO05D005918 1.3e-104 384.0 357 57.7
GSVIVG01023502001 Vitis vinifera HOM05D004964 ORTHO05D005918 3.0e-104 382.9 398 56.5
TAR362G0358 Trochodendron aralioides HOM05D004964 ORTHO05D005918 2.4e-101 373.2 391 52.7
Cc02_g08800 Coffea canephora HOM05D004964 ORTHO05D005918 1.2e-100 370.9 360 55.0
Cpa.g.sc162.40 Carica papaya HOM05D004964 ORTHO05D005918 1.5e-100 370.5 396 52.8
Lj2A43G39 Lonicera japonica HOM05D004964 ORTHO05D005918 2.6e-100 369.8 383 53.3
Oeu016533.1 Olea europaea HOM05D004964 ORTHO05D005918 8.4e-99 364.8 371 55.0
Gohir.D08G234400 Gossypium hirsutum HOM05D004964 ORTHO05D005918 1.4e-98 364.0 399 54.9
Gorai.004G249200 Gossypium raimondii HOM05D004964 ORTHO05D005918 1.4e-98 364.0 399 54.9
Rhsim09G0136900 Rhododendron simsii HOM05D004964 ORTHO05D005918 4.2e-98 362.5 390 50.3
PGSC0003DMG401006195 Solanum tuberosum HOM05D004964 ORTHO05D005918 7.1e-98 361.7 359 53.8
CAN.G588.60 Capsicum annuum HOM05D004964 ORTHO05D005918 2.1e-97 360.1 383 50.7
Solyc01g111410.3 Solanum lycopersicum HOM05D004964 ORTHO05D005918 7.8e-97 358.2 381 50.9
Peaxi162Scf00407g00626 Petunia axillaris HOM05D004964 ORTHO05D005918 1.7e-96 357.1 400 49.2
Ciclev10020293m.g Citrus clementina HOM05D004964 ORTHO05D005918 2.3e-96 356.7 404 52.5
Manes.08G139500 Manihot esculenta HOM05D004964 ORTHO05D005918 3.0e-96 356.3 394 49.7
Sopen01g053470 Solanum pennellii HOM05D004964 ORTHO05D005918 3.9e-96 355.9 359 52.9
VMungo0331G1958 Vigna mungo HOM05D004964 ORTHO05D005918 4.3e-95 352.4 362 53.3
Phvul.010G051000 Phaseolus vulgaris HOM05D004964 ORTHO05D005918 5.6e-95 352.1 396 52.8
arahy.Tifrunner.gnm1.ann1.H9CC2T Arachis hypogaea HOM05D004964 ORTHO05D005918 1.3e-94 350.9 398 52.0
Ca_14064_v3 Cicer arietinum L. HOM05D004964 ORTHO05D005918 2.8e-94 349.7 401 51.6
Duzib106G0302 Durio zibethinus HOM05D004964 ORTHO05D005918 3.6e-94 349.4 364 56.9
Lalb_Chr03g0040321 Lupinus albus HOM05D004964 ORTHO05D005918 4.8e-94 349.0 392 52.3
HanXRQChr07g0204481 Helianthus annuus HOM05D004964 ORTHO05D005918 8.1e-94 348.2 360 53.1
MELO3C008708.2 Cucumis melo HOM05D004964 ORTHO05D005918 1.1e-93 347.8 398 50.3
Nn4g26424 Nelumbo nucifera HOM05D004964 ORTHO05D005918 1.4e-93 347.4 378 51.3
MBI07_g16903_MAGBIO Magnolia biondii HOM05D004964 ORTHO05D005918 1.8e-93 347.1 359 52.6
Sed0000191 Sechium edule HOM05D004964 ORTHO05D005918 5.3e-93 345.5 385 51.7
arahy.Tifrunner.gnm1.ann1.J3Q9FM Arachis hypogaea HOM05D004964 ORTHO05D005918 1.2e-92 344.4 397 51.1
FAN05G4025 Fragaria x ananassa HOM05D004964 ORTHO05D005918 2.6e-92 343.2 393 51.9
TPR.G17496 Trifolium pratense HOM05D004964 ORTHO05D005918 4.5e-92 342.4 396 51.5
FAN05G4826 Fragaria x ananassa HOM05D004964 ORTHO05D005918 7.6e-92 341.7 393 51.7
Aqoxy5G02134 Aquilegia oxysepala HOM05D004964 ORTHO05D005918 1.3e-91 340.9 403 45.9
Gohir.A08G217400 Gossypium hirsutum HOM05D004964 ORTHO05D005918 1.7e-91 340.5 395 53.2
Lsat_1_v5_gn_8_24860 Lactuca sativa HOM05D004964 ORTHO05D005918 2.2e-91 340.1 366 51.6
TPR.G33137 Trifolium pratense HOM05D004964 ORTHO05D005918 8.4e-91 338.2 403 49.6
Aqoxy4G00649 Aquilegia oxysepala HOM05D004964 ORTHO05D005918 1.1e-90 337.8 403 45.4
FAN14G5822 Fragaria x ananassa HOM05D004964 ORTHO05D005918 1.1e-90 337.8 395 50.4
Thhalv10000880m.g Eutrema salsugineum HOM05D004964 ORTHO05D005918 7.1e-90 335.1 357 51.0
Glyma.03G113500 Glycine max HOM05D004964 ORTHO05D005918 1.3e-88 330.9 396 51.5
Sc10g0001190 Simmondsia chinensis HOM05D004964 ORTHO05D005918 1.3e-88 330.9 345 50.4
AL1G20790 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 2.3e-88 330.1 359 49.6
Sp2g09220 Schrenkiella parvula HOM05D004964 ORTHO05D005918 3.0e-88 329.7 357 50.7
ECA233G3630 Erigeron canadensis HOM05D004964 ORTHO05D005918 2.5e-87 326.6 356 52.0
BcaC06g34559 Brassica carinata HOM05D004964 ORTHO05D005918 7.4e-87 325.1 388 47.7
BolC7t43245H Brassica oleracea HOM05D004964 ORTHO05D005918 7.4e-87 325.1 388 47.7
C07p27180 Brassica napus HOM05D004964 ORTHO05D005918 4.8e-86 322.4 388 47.4
Psat4g225120 Pisum sativum HOM05D004964 ORTHO05D005918 4.8e-86 322.4 359 52.1
A06p47210 Brassica napus HOM05D004964 ORTHO05D005918 8.1e-86 321.6 386 46.6
BraA06t27592Z Brassica rapa HOM05D004964 ORTHO05D005918 8.1e-86 321.6 386 46.6
Carub.0001s0952 Capsella rubella HOM05D004964 ORTHO05D005918 1.4e-85 320.9 360 49.2
CARHR010210 Cardamine hirsuta HOM05D004964 ORTHO05D005918 3.1e-85 319.7 362 49.7
Medtr8g006785 Medicago truncatula HOM05D004964 ORTHO05D005918 3.1e-85 319.7 423 47.0
AT1G10095 Arabidopsis thaliana HOM05D004964 ORTHO05D005918 4.0e-85 319.3 382 46.3
A09p21080 Brassica napus HOM05D004964 ORTHO05D005918 4.0e-85 319.3 390 47.4
Glyma.07G113400 Glycine max HOM05D004964 ORTHO05D005918 5.3e-85 318.9 357 53.8
Lj3g0015193 Lotus japonicus HOM05D004964 ORTHO05D005918 5.3e-85 318.9 393 48.9
Atru.chr2.987 Acer truncatum HOM05D004964 ORTHO05D005918 2.0e-84 317.0 393 50.6
Migut.F00800 Erythranthe guttata HOM05D004964 ORTHO05D005918 2.2e-83 313.5 372 50.3
BraA09t37709Z Brassica rapa HOM05D004964 ORTHO05D005918 3.8e-83 312.8 390 49.0
BcaC06g31621 Brassica carinata HOM05D004964 ORTHO05D005918 8.4e-83 311.6 365 48.5
Hund13719 Selenicereus undatus HOM05D004964 ORTHO05D005918 7.1e-82 308.5 400 45.5
DCAR_022832 Daucus carota HOM05D004964 ORTHO05D005918 3.5e-81 306.2 397 48.1
PSO210G1919 Papaver somniferum HOM05D004964 ORTHO05D005918 7.4e-79 298.5 373 48.0
EL10Ac2g04577 Beta vulgaris HOM05D004964 ORTHO05D005918 4.8e-78 295.8 426 44.1
ATR0736G161 Amborella trichopoda HOM05D004964 ORTHO05D005918 1.8e-77 293.9 378 46.0
AUR62023306 Chenopodium quinoa HOM05D004964 ORTHO05D005918 9.0e-77 291.6 404 45.8
unitig_46.g18500 Utricularia gibba HOM05D004964 ORTHO05D005918 2.0e-76 290.4 394 44.4
unitig_47.g30763 Utricularia gibba HOM05D004964 ORTHO05D005918 2.0e-76 290.4 394 44.4
vmacro10367 Vaccinium macrocarpon HOM05D004964 ORTHO05D005918 4.5e-76 289.3 468 40.0
MD12G1248000 Malus domestica HOM05D004964 ORTHO05D005918 5.8e-76 288.9 291 53.6
SGA_v2.0_scaffold295G47511 Striga asiatica HOM05D004964 ORTHO05D005918 1.3e-75 287.7 346 51.2
MSTRG.14348 Avicennia marina HOM05D004964 ORTHO05D005918 2.1e-73 280.4 405 45.2
BcaB07g30949 Brassica carinata HOM05D004964 ORTHO05D005918 1.3e-72 277.7 389 44.2
HPP92_003061 Vanilla planifolia HOM05D004964 ORTHO05D005918 3.0e-72 276.6 393 43.0
Eucgr.H04227 Eucalyptus grandis HOM05D004964 ORTHO05D005918 1.9e-71 273.9 356 45.5
AUR62008995 Chenopodium quinoa HOM05D004964 ORTHO05D005918 2.5e-71 273.5 360 46.9
Dinv18988 Davidia involucrata HOM05D004964 ORTHO05D005918 7.4e-71 271.9 240 61.2
Nitab4.5_0005396g0030 Nicotiana tabacum HOM05D004964 ORTHO05D005918 7.4e-71 271.9 355 45.9
CSS0038343 Camellia sinensis var. sinensis HOM05D004964 ORTHO05D005918 1.3e-70 271.2 373 45.6
Nitab4.5_0013387g0040 Nicotiana tabacum HOM05D004964 ORTHO05D005918 1.3e-70 271.2 395 42.5
SGA_v2.0_scaffold26G11247 Striga asiatica HOM05D004964 ORTHO05D005918 2.2e-70 270.4 334 48.5
CsaV3_2G009770 Cucumis sativus L. HOM05D004964 ORTHO05D005918 6.9e-69 265.4 288 53.1
Potri.013G047100 Populus trichocarpa HOM05D004964 ORTHO05D005918 6.9e-69 265.4 271 54.6
COL.COLO4_00075 Corchorus olitorius HOM05D004964 ORTHO05D005918 2.6e-68 263.5 248 58.9
AL1G47560 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 3.4e-68 263.1 377 43.0
Hma1.2p1_1512F.1_g287895 Hydrangea macrophylla HOM05D004964 ORTHO05D005918 1.3e-67 261.2 205 66.3
PSO210G0659 Papaver somniferum HOM05D004964 ORTHO05D005918 1.0e-64 251.5 317 47.0
SGA_v2.0_scaffold177G39428 Striga asiatica HOM05D004964 ORTHO05D005918 1.5e-63 247.7 359 46.2
CARHR222860 Cardamine hirsuta HOM05D004964 ORTHO05D005918 2.4e-61 240.4 244 52.5
FAN09G0282 Fragaria x ananassa HOM05D004964 ORTHO05D005918 9.1e-61 238.4 231 58.0
AL1G47570 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 2.1e-57 227.3 359 42.6
SalBow6G5984 Salvia bowleyana HOM05D004964 ORTHO05D005918 7.0e-53 212.2 414 34.5
Aa31LG1G4780 Aethionema arabicum HOM05D004964 ORTHO05D005918 3.2e-50 203.4 206 53.9
BcaC04g21837 Brassica carinata HOM05D004964 ORTHO05D005918 4.8e-46 189.5 291 41.9
Zm00001eb229480 Zea mays HOM05D004964 ORTHO05D005918 8.2e-46 188.7 247 43.3
Pp3c7_7610 Physcomitrium patens HOM05D004964 ORTHO05D005918 2.4e-45 187.2 434 31.1
Os01g0684800 Oryza sativa ssp. japonica HOM05D004964 ORTHO05D005918 6.5e-43 179.1 242 41.7
ClCG11G010620 Citrullus lanatus HOM05D004964 ORTHO05D005918 1.5e-42 177.9 185 50.3
AL1G20660 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 1.6e-41 174.5 357 35.0
AagrBONN_evm.TU.Sc2ySwM_340.245 Anthoceros agrestis HOM05D004964 ORTHO05D005918 2.1e-41 174.1 377 34.0
Ah.10g037790 Amaranthus hybridus HOM05D004964 ORTHO05D005918 4.7e-41 172.9 366 33.9
QL03p030145 Quercus lobata HOM05D004964 ORTHO05D005918 4.7e-41 172.9 170 51.8
Pp3c11_21460 Physcomitrium patens HOM05D004964 ORTHO05D005918 5.2e-40 169.5 311 35.4
C09p26820 Brassica napus HOM05D004964 ORTHO05D005918 7.5e-39 165.6 293 38.9
QL03p030368 Quercus lobata HOM05D004964 ORTHO05D005918 1.8e-37 161.0 187 50.8
Mapoly0082s0051 Marchantia polymorpha HOM05D004964 ORTHO05D005918 5.4e-37 159.5 417 31.4
QL03p030280 Quercus lobata HOM05D004964 ORTHO05D005918 3.5e-36 156.8 137 60.6
QL03p030283 Quercus lobata HOM05D004964 ORTHO05D005918 1.5e-34 151.4 156 50.6
TPR.G15846 Trifolium pratense HOM05D004964 ORTHO05D005918 2.1e-33 147.5 167 53.9
Hund12147 Selenicereus undatus HOM05D004964 ORTHO05D005918 1.5e-31 141.4 214 38.8
SMO146G0189 Selaginella moellendorffii HOM05D004964 ORTHO05D005918 2.2e-30 137.5 362 30.1
SHI23132 Sapria himalayana HOM05D000024 ORTHO05D000007 1.1e-29 135.2 126 58.7
BolC9t55571H Brassica oleracea HOM05D004964 ORTHO05D005918 3.1e-29 133.7 179 42.5
C07p27190 Brassica napus HOM05D004964 ORTHO05D005918 6.6e-27 125.9 150 52.0
BolC7t43246H Brassica oleracea HOM05D004964 ORTHO05D005918 6.6e-27 125.9 150 52.0
MD12G1248600 Malus domestica HOM05D004964 ORTHO05D005918 3.0e-24 117.1 118 57.6
CDE04G2937 Ceratophyllum demersum HOM05D004964 ORTHO05D005918 1.3e-22 111.7 118 51.7
CBR_g718 Chara braunii HOM05D004964 ORTHO05D005918 2.9e-22 110.5 250 34.0
SGA_v2.0_scaffold26G11248 Striga asiatica HOM05D004964 ORTHO05D005918 1.8e-21 107.8 173 39.9
Haze_04423 Corylus avellana HOM05D004964 ORTHO05D005918 1.2e-20 105.1 164 42.7
Haze_04422 Corylus avellana HOM05D004964 ORTHO05D005918 6.6e-19 99.4 152 43.4
Aa31LG1G4790 Aethionema arabicum HOM05D004964 ORTHO05D005918 2.8e-17 94.0 136 39.7
RcHm_v2.0_Chr2g0095691 Rosa chinensis HOM05D004964 ORTHO05D005918 1.0e-16 92.0 66 69.7
Lsat_1_v5_gn_6_73440 Lactuca sativa HOM05D001771 ORTHO05D001876 5.2e-16 89.7 93 52.7
CDE04G0768 Ceratophyllum demersum HOM05D004964 ORTHO05D005918 3.7e-14 83.6 159 34.0
arahy.Tifrunner.gnm1.ann1.A28SEL Arachis hypogaea HOM05D000231 ORTHO05D005918 4.9e-14 83.2 91 49.5
QL03p030376 Quercus lobata HOM05D004964 ORTHO05D005918 1.1e-13 82.0 85 49.4
TPR.G19618 Trifolium pratense HOM05D004964 ORTHO05D005918 3.9e-11 73.6 95 41.1
Psat7g249360 Pisum sativum HOM05D001947 ORTHO05D021361 1.6e-09 68.2 62 56.5
MD12G1248100 Malus domestica HOM05D004964 ORTHO05D005918 8.1e-09 65.9 66 50.0
SEGI_14565 Sequoiadendron giganteum HOM05D004964 ORTHO05D005918 8.1e-09 65.9 96 39.6
Oeu012237.1 Olea europaea HOM05D004964 ORTHO05D005918 2.2e-06 57.8 78 37.2
MD12G1248900 Malus domestica HOM05D004964 ORTHO05D005918 4.9e-06 56.6 59 57.6


User provided reference genes

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