Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G0496 Cannabis sativa HOM05D000834 ORTHO05D006956 5.4e-226 787.3 400 100.0
CANSAT01G1591 Cannabis sativa HOM05D000834 ORTHO05D006956 5.4e-226 787.3 400 100.0
Cfa002491 Carpinus fangiana HOM05D000834 ORTHO05D006956 1.0e-192 676.8 402 82.6
Haze_24714 Corylus avellana HOM05D000834 ORTHO05D006956 1.5e-191 672.9 402 81.8
Prupe.8G214700 Prunus persica HOM05D000834 ORTHO05D006956 3.1e-189 665.2 401 80.8
CiPaw.03G271600 Carya illinoinensis HOM05D000834 ORTHO05D006956 7.6e-188 660.6 402 80.6
Potri.002G255900 Populus trichocarpa HOM05D000834 ORTHO05D006956 2.2e-187 659.1 397 81.1
MD10G1175400 Malus domestica HOM05D000834 ORTHO05D006956 2.9e-187 658.7 401 80.5
Gorai.007G150200 Gossypium raimondii HOM05D000834 ORTHO05D006956 1.1e-186 656.8 398 80.2
GSVIVG01028438001 Vitis vinifera HOM05D000834 ORTHO05D006956 3.2e-186 655.2 397 80.6
MD05G1187700 Malus domestica HOM05D000834 ORTHO05D006956 1.2e-185 653.3 401 79.6
Gohir.D11G140000 Gossypium hirsutum HOM05D000834 ORTHO05D006956 3.5e-185 651.7 398 79.6
Manes.13G039100 Manihot esculenta HOM05D000834 ORTHO05D006956 3.5e-185 651.7 397 79.3
Potri.014G193300 Populus trichocarpa HOM05D000834 ORTHO05D006956 1.3e-184 649.8 397 80.6
Duzib138G0050 Durio zibethinus HOM05D000834 ORTHO05D006956 1.8e-184 649.4 402 79.1
Actinidia09509 Actinidia chinensis HOM05D000834 ORTHO05D006956 3.0e-184 648.7 398 78.1
Sabra02G0194500 Salix brachista HOM05D000834 ORTHO05D006956 3.9e-184 648.3 397 80.4
TAR362G0351 Trochodendron aralioides HOM05D000834 ORTHO05D006956 3.9e-184 648.3 401 79.6
Gohir.A11G133900 Gossypium hirsutum HOM05D000834 ORTHO05D006956 5.1e-184 647.9 398 78.9
Thecc.01G249300 Theobroma cacao HOM05D000834 ORTHO05D006956 8.7e-184 647.1 402 78.6
CSS0050145 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 5.7e-183 644.4 397 78.3
Manes.12G038400 Manihot esculenta HOM05D000834 ORTHO05D006956 5.7e-183 644.4 397 78.8
Glyma.13G127400 Glycine max HOM05D000834 ORTHO05D006956 1.6e-182 642.9 401 79.3
COL.COLO4_02902 Corchorus olitorius HOM05D000834 ORTHO05D006956 2.1e-182 642.5 402 78.4
Nn1g03003 Nelumbo nucifera HOM05D000834 ORTHO05D006956 2.1e-182 642.5 393 80.4
RcHm_v2.0_Chr6g0286481 Rosa chinensis HOM05D000834 ORTHO05D006956 3.7e-182 641.7 401 78.1
Lj5g0006902 Lotus japonicus HOM05D000834 ORTHO05D006956 1.4e-181 639.8 401 78.8
PGR044G1351 Punica granatum HOM05D000834 ORTHO05D006956 2.4e-181 639.0 401 79.1
arahy.Tifrunner.gnm1.ann1.WYWU3M Arachis hypogaea HOM05D000834 ORTHO05D006956 3.1e-181 638.6 401 79.1
Phvul.007G153700 Phaseolus vulgaris HOM05D000834 ORTHO05D006956 5.3e-181 637.9 397 79.1
Lj1C74T17 Lonicera japonica HOM05D000834 ORTHO05D006956 6.9e-181 637.5 397 78.8
arahy.Tifrunner.gnm1.ann1.G250MW Arachis hypogaea HOM05D000834 ORTHO05D006956 1.2e-180 636.7 401 78.8
FvH4_2g20370 Fragaria vesca HOM05D000834 ORTHO05D006956 1.2e-180 636.7 397 78.3
TPR.G5902 Trifolium pratense HOM05D000834 ORTHO05D006956 1.5e-180 636.3 401 78.3
Sc05g0002850 Simmondsia chinensis HOM05D000834 ORTHO05D006956 3.4e-180 635.2 400 76.8
VMungo0720G2048 Vigna mungo HOM05D000834 ORTHO05D006956 3.4e-180 635.2 401 78.3
PSO832G2974 Papaver somniferum HOM05D000834 ORTHO05D006956 1.7e-179 632.9 397 78.3
CSS0037788 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 2.2e-179 632.5 401 76.8
PSO764G0197 Papaver somniferum HOM05D000834 ORTHO05D006956 2.9e-179 632.1 397 77.8
Medtr1g069455 Medicago truncatula HOM05D000834 ORTHO05D006956 3.8e-179 631.7 401 77.6
TWI12G0869 Tripterygium wilfordii HOM05D000834 ORTHO05D006956 3.8e-179 631.7 397 76.3
QL09p041638 Quercus lobata HOM05D000834 ORTHO05D006956 6.5e-179 630.9 400 77.8
ClCG06G001380 Citrullus lanatus HOM05D000834 ORTHO05D006956 1.1e-178 630.2 398 78.4
Hund05490 Selenicereus undatus HOM05D000834 ORTHO05D006956 1.4e-178 629.8 397 76.3
FAN15G3585 Fragaria x ananassa HOM05D000834 ORTHO05D006956 2.5e-178 629.0 394 77.2
AUR62025434 Chenopodium quinoa HOM05D000834 ORTHO05D006956 4.2e-178 628.2 397 77.6
Eucgr.K01422 Eucalyptus grandis HOM05D000834 ORTHO05D006956 4.2e-178 628.2 397 77.1
CsaV3_6G007320 Cucumis sativus L. HOM05D000834 ORTHO05D006956 9.3e-178 627.1 399 77.4
Rhsim01G0259900 Rhododendron simsii HOM05D000834 ORTHO05D006956 1.6e-177 626.3 421 73.4
FAN24G3261 Fragaria x ananassa HOM05D000834 ORTHO05D006956 2.7e-177 625.5 397 76.8
Sed0018887 Sechium edule HOM05D000834 ORTHO05D006956 4.6e-177 624.8 399 78.2
Atru.chr5.1869 Acer truncatum HOM05D000834 ORTHO05D006956 6.1e-177 624.4 402 77.6
Psat6g062480 Pisum sativum HOM05D000834 ORTHO05D006956 1.0e-176 623.6 401 77.1
Migut.D00483 Erythranthe guttata HOM05D000834 ORTHO05D006956 2.3e-176 622.5 399 76.2
Oeu052085.1 Olea europaea HOM05D000834 ORTHO05D006956 2.5e-175 619.0 395 78.2
Ciclev10020464m.g Citrus clementina HOM05D000834 ORTHO05D006956 9.7e-175 617.1 402 74.1
Lalb_Chr02g0152761 Lupinus albus HOM05D000834 ORTHO05D006956 9.7e-175 617.1 401 76.1
CDE09G1390 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 1.6e-174 616.3 389 77.4
Lsat_1_v5_gn_5_181100 Lactuca sativa HOM05D000834 ORTHO05D006956 1.1e-173 613.6 397 74.6
HanXRQChr01g0014941 Helianthus annuus HOM05D000834 ORTHO05D006956 5.3e-173 611.3 397 74.8
Cc01_g17740 Coffea canephora HOM05D000834 ORTHO05D006956 1.5e-172 609.8 419 71.8
Lalb_Chr06g0170741 Lupinus albus HOM05D000834 ORTHO05D006956 3.4e-172 608.6 402 75.1
Aqoxy5G00122 Aquilegia oxysepala HOM05D000834 ORTHO05D006956 5.9e-172 607.8 397 74.6
MBI07_g22384_MAGBIO Magnolia biondii HOM05D000834 ORTHO05D006956 1.3e-171 606.7 361 81.2
MSTRG.18357 Avicennia marina HOM05D000834 ORTHO05D006956 1.7e-171 606.3 396 75.5
BraA09t41279Z Brassica rapa HOM05D000834 ORTHO05D006956 2.2e-171 605.9 401 74.1
Cpa.g.sc87.39 Carica papaya HOM05D000834 ORTHO05D006956 3.8e-171 605.1 433 70.2
BcaC07g41219 Brassica carinata HOM05D000834 ORTHO05D006956 8.5e-171 604.0 401 73.6
BcaB07g31592 Brassica carinata HOM05D000834 ORTHO05D006956 1.1e-170 603.6 401 73.8
Sp3g33600 Schrenkiella parvula HOM05D000834 ORTHO05D006956 1.1e-170 603.6 401 73.8
BolC8t51785H Brassica oleracea HOM05D000834 ORTHO05D006956 3.2e-170 602.1 400 73.5
ATR0787G052 Amborella trichopoda HOM05D000834 ORTHO05D006956 5.5e-170 601.3 395 75.4
THA.LOC104814534 Tarenaya hassleriana HOM05D000834 ORTHO05D006956 5.5e-170 601.3 401 72.6
AL3G53320 Arabidopsis lyrata HOM05D000834 ORTHO05D006956 7.2e-170 600.9 401 72.8
BcaB08g34904 Brassica carinata HOM05D000834 ORTHO05D006956 9.4e-170 600.5 401 73.8
BraA07t27827Z Brassica rapa HOM05D000834 ORTHO05D006956 9.4e-170 600.5 401 73.6
Carub.0003s3474 Capsella rubella HOM05D000834 ORTHO05D006956 9.4e-170 600.5 401 73.1
AT2G20360 Arabidopsis thaliana HOM05D000834 ORTHO05D006956 1.2e-169 600.1 401 73.1
BcaC04g22796 Brassica carinata HOM05D000834 ORTHO05D006956 1.2e-169 600.1 401 73.6
BolC9t54430H Brassica oleracea HOM05D000834 ORTHO05D006956 1.2e-169 600.1 401 73.6
Sopen09g025590 Solanum pennellii HOM05D000834 ORTHO05D006956 1.2e-169 600.1 398 74.9
SGA_v2.0_scaffold1G00665 Striga asiatica HOM05D000121 ORTHO05D000102 1.2e-169 600.1 408 73.8
MELO3C022394.2 Cucumis melo HOM05D000834 ORTHO05D006956 1.6e-169 599.7 411 74.2
Thhalv10002002m.g Eutrema salsugineum HOM05D000834 ORTHO05D006956 2.1e-169 599.4 401 72.6
A07p00360 Brassica napus HOM05D000834 ORTHO05D000909 3.6e-169 598.6 400 73.5
A09p58940 Brassica napus HOM05D000834 ORTHO05D006956 3.6e-169 598.6 398 73.1
Aa31LG8G17350 Aethionema arabicum HOM05D000834 ORTHO05D006956 6.1e-169 597.8 401 72.8
Solyc09g064450.3 Solanum lycopersicum HOM05D000834 ORTHO05D006956 6.1e-169 597.8 398 74.6
C08p42260 Brassica napus HOM05D000834 ORTHO05D006956 1.0e-168 597.0 398 72.9
THA.LOC104820067 Tarenaya hassleriana HOM05D000834 ORTHO05D006956 1.8e-168 596.3 401 72.3
BcaC06g36723 Brassica carinata HOM05D000834 ORTHO05D006956 3.9e-168 595.1 401 72.8
CARHR110880 Cardamine hirsuta HOM05D000834 ORTHO05D006956 3.9e-168 595.1 401 72.6
DCAR_004694 Daucus carota HOM05D000834 ORTHO05D006956 3.9e-168 595.1 398 72.6
C07p00720 Brassica napus HOM05D000834 ORTHO05D006956 6.7e-168 594.3 400 72.8
A09p12840 Brassica napus HOM05D000834 ORTHO05D006956 1.1e-167 593.6 398 72.9
BolC7t40517H Brassica oleracea HOM05D000834 ORTHO05D006956 1.5e-167 593.2 400 72.8
HPP92_020769 Vanilla planifolia HOM05D000834 ORTHO05D006956 3.3e-167 592.0 395 73.7
C09p15230 Brassica napus HOM05D000834 ORTHO05D006956 4.3e-167 591.7 395 73.4
Ah.08g213640 Amaranthus hybridus HOM05D000834 ORTHO05D006956 5.7e-167 591.3 364 78.3
BraA09t36931Z Brassica rapa HOM05D000834 ORTHO05D006956 3.7e-166 588.6 392 74.0
unitig_22.g6307 Utricularia gibba HOM05D000834 ORTHO05D006956 1.8e-165 586.3 395 74.2
Peaxi162Scf00043g00251 Petunia axillaris HOM05D000834 ORTHO05D006956 1.0e-163 580.5 401 72.6
Ca_09644_v3 Cicer arietinum L. HOM05D000834 ORTHO05D006956 1.7e-163 579.7 418 70.8
Os02g0816800 Oryza sativa ssp. japonica HOM05D000834 ORTHO05D006956 1.4e-162 576.6 362 76.8
SalBow4G1359 Salvia bowleyana HOM05D000834 ORTHO05D006956 3.2e-162 575.5 493 61.1
CSS0005533 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 7.2e-162 574.3 452 66.8
Nitab4.5_0002435g0060 Nicotiana tabacum HOM05D000834 ORTHO05D006956 2.3e-160 569.3 444 65.5
vmacro14792 Vaccinium macrocarpon HOM05D000834 ORTHO05D006956 9.7e-159 563.9 550 56.4
BcaB03g16828 Brassica carinata HOM05D000834 ORTHO05D006956 4.8e-158 561.6 401 69.8
Nitab4.5_0000385g0020 Nicotiana tabacum HOM05D000834 ORTHO05D006956 8.2e-158 560.8 443 65.2
FAN27G0744 Fragaria x ananassa HOM05D000834 ORTHO05D006956 5.0e-155 551.6 354 76.3
SEGI_11456 Sequoiadendron giganteum HOM05D000834 ORTHO05D006956 2.5e-154 549.3 398 67.8
CDE02G1088 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 6.5e-147 524.6 328 78.7
AUR62008805 Chenopodium quinoa HOM05D000834 ORTHO05D006956 9.8e-143 510.8 309 78.6
CAN.G536.3 Capsicum annuum HOM05D000834 ORTHO05D006956 1.4e-136 490.3 316 77.8
ECA248G1156 Erigeron canadensis HOM05D000121 ORTHO05D000102 1.2e-129 467.2 307 74.6
Dinv19263 Davidia involucrata HOM05D000834 ORTHO05D006956 2.8e-129 466.1 288 76.7
AagrBONN_evm.TU.Sc2ySwM_368.182 Anthoceros agrestis HOM05D000834 ORTHO05D006956 5.2e-120 435.3 391 55.8
Pp3c14_9070 Physcomitrium patens HOM05D000834 ORTHO05D006956 4.1e-117 425.6 365 57.5
SalBow6G5988 Salvia bowleyana HOM05D000834 ORTHO05D006956 1.6e-116 423.7 344 65.4
Mapoly0051s0097 Marchantia polymorpha HOM05D000834 ORTHO05D006956 4.7e-113 412.1 392 54.3
Zm00001eb258880 Zea mays HOM05D000834 ORTHO05D006956 2.3e-112 409.8 299 71.6
CBR_g12802 Chara braunii HOM05D000834 ORTHO05D006956 1.2e-111 407.5 344 57.0
Actinidia23703 Actinidia chinensis HOM05D000834 ORTHO05D006956 9.6e-98 361.3 236 75.8
SMO119G0351 Selaginella moellendorffii HOM05D000834 ORTHO05D006956 5.4e-93 345.5 357 48.7
MD15G1374200 Malus domestica HOM05D000834 ORTHO05D006956 1.0e-83 314.7 226 70.4
Pp3c1_35920 Physcomitrium patens HOM05D000834 ORTHO05D006956 8.7e-83 311.6 284 52.8
MCO13G055 Micromonas commoda HOM05D000834 ORTHO05D006956 3.3e-74 283.1 334 44.3
PRCOL_00005891 Prasinoderma coloniale HOM05D000834 ORTHO05D006956 8.7e-67 258.5 358 39.9
SHI26743 Sapria himalayana HOM05D000834 ORTHO05D006956 1.3e-59 234.6 205 63.4
Cre10.g434450 Chlamydomonas reinhardtii HOM05D000834 ORTHO05D006956 4.3e-58 229.6 351 39.6
Oeu015439.4 Olea europaea HOM05D000121 ORTHO05D000102 9.7e-58 228.4 268 51.1
SEGI_20632 Sequoiadendron giganteum HOM05D000834 ORTHO05D006956 2.2e-57 227.3 171 69.6
Dinv43064 Davidia involucrata HOM05D000834 ORTHO05D006956 4.1e-56 223.0 229 54.6
Gohir.A13G077301 Gossypium hirsutum HOM05D000834 ORTHO05D006956 1.5e-42 177.9 98 86.7
Gohir.A12G044900 Gossypium hirsutum HOM05D000751 ORTHO05D000889 2.7e-31 140.6 80 81.2
Gohir.A01G059200 Gossypium hirsutum HOM05D000751 ORTHO05D000889 4.5e-31 139.8 82 80.5
vmacro08769 Vaccinium macrocarpon HOM05D000834 ORTHO05D006956 4.2e-29 133.3 132 56.1
CDE02G0223 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 9.8e-26 122.1 81 70.4
SHI26740 Sapria himalayana HOM05D000834 ORTHO05D006956 2.5e-21 107.5 105 49.5
BcaB02g11316 Brassica carinata HOM05D000834 ORTHO05D000693 2.6e-18 97.4 75 62.7
vmacro08768 Vaccinium macrocarpon HOM05D000834 ORTHO05D426596 1.3e-17 95.1 65 70.8
Lsat_1_v5_gn_8_148040 Lactuca sativa HOM05D000834 ORTHO05D006956 1.7e-09 68.2 53 62.3
Dinv43063 Davidia involucrata HOM05D000834 ORTHO05D183077 9.2e-08 62.4 50 66.0
Actinidia30121 Actinidia chinensis HOM05D000834 ORTHO05D056792 1.6e-07 61.6 41 68.3
Lsat_1_v5_gn_7_90061 Lactuca sativa HOM05D000834 ORTHO05D001119 7.8e-07 59.3 37 73.0
CiPaw.05G147100 Carya illinoinensis HOM05D000834 ORTHO05D006956 1.7e-06 58.2 51 60.8


User provided reference genes

Program Settings