Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G0464 Cannabis sativa HOM05D007989 ORTHO05D010087 9.3e-110 400.2 201 100.0
Cfa002588 Carpinus fangiana HOM05D007989 ORTHO05D010087 1.2e-35 154.1 202 46.5
Haze_24825 Corylus avellana HOM05D007989 ORTHO05D010087 5.8e-35 151.8 203 47.3
Haze_24830 Corylus avellana HOM05D007989 ORTHO05D010087 5.8e-35 151.8 203 47.3
FvH4_1g20210 Fragaria vesca HOM05D007989 ORTHO05D010087 1.2e-32 144.1 195 51.8
Dinv08871 Davidia involucrata HOM05D007989 ORTHO05D010087 1.6e-32 143.7 201 47.3
FAN26G0087 Fragaria x ananassa HOM05D007989 ORTHO05D010087 2.7e-32 142.9 197 50.3
FAN19G2348 Fragaria x ananassa HOM05D007989 ORTHO05D010087 4.6e-32 142.1 195 51.3
FAN23G0861 Fragaria x ananassa HOM05D007989 ORTHO05D010087 4.6e-32 142.1 197 50.3
RcHm_v2.0_Chr2g0112271 Rosa chinensis HOM05D007989 ORTHO05D010087 6.0e-32 141.7 194 51.0
MD01G1036700 Malus domestica HOM05D007989 ORTHO05D010087 1.7e-31 140.2 207 47.3
Prupe.6G193900 Prunus persica HOM05D007989 ORTHO05D010087 3.0e-31 139.4 219 46.1
FAN28G0040 Fragaria x ananassa HOM05D007989 ORTHO05D010087 5.1e-31 138.7 194 51.0
MD15G1317900 Malus domestica HOM05D007989 ORTHO05D010087 8.6e-31 137.9 215 45.6
QL06p047951 Quercus lobata HOM05D007989 ORTHO05D010087 5.6e-30 135.2 217 42.9
CiPaw.04G104100 Carya illinoinensis HOM05D007989 ORTHO05D010087 1.6e-29 133.7 215 40.5
CiPaw.03G146300 Carya illinoinensis HOM05D007989 ORTHO05D010087 1.4e-28 130.6 211 42.2
Thecc.01G095100 Theobroma cacao HOM05D007989 ORTHO05D010087 3.1e-28 129.4 196 44.9
Gohir.A02G130000 Gossypium hirsutum HOM05D007989 ORTHO05D010087 1.2e-27 127.5 215 41.4
Gorai.003G041700 Gossypium raimondii HOM05D007989 ORTHO05D010087 2.6e-27 126.3 215 41.4
Ciclev10026467m.g Citrus clementina HOM05D007989 ORTHO05D010087 7.6e-27 124.8 191 42.9
Gohir.D03G040900 Gossypium hirsutum HOM05D007989 ORTHO05D010087 1.3e-26 124.0 215 40.9
Manes.13G097300 Manihot esculenta HOM05D007989 ORTHO05D010087 3.8e-26 122.5 199 44.7
Atru.chr3.1338 Acer truncatum HOM05D007989 ORTHO05D010087 4.9e-26 122.1 207 43.0
Duzib147G0239 Durio zibethinus HOM05D007989 ORTHO05D010087 4.9e-26 122.1 216 41.7
Potri.005G071400 Populus trichocarpa HOM05D007989 ORTHO05D010087 6.4e-26 121.7 196 43.4
COL.COLO4_27300 Corchorus olitorius HOM05D007989 ORTHO05D010087 1.4e-25 120.6 219 42.0
TWI53G0073 Tripterygium wilfordii HOM05D007989 ORTHO05D010087 5.4e-25 118.6 181 41.4
Psat1g083960 Pisum sativum HOM05D007989 ORTHO05D010087 7.1e-25 118.2 185 45.4
Nn1g05466 Nelumbo nucifera HOM05D007989 ORTHO05D010087 9.2e-25 117.9 195 39.5
Lj6g0026253 Lotus japonicus HOM05D007989 ORTHO05D010087 2.1e-24 116.7 186 44.6
Sabra05G0058400 Salix brachista HOM05D007989 ORTHO05D010087 7.8e-24 114.8 188 41.5
Nitab4.5_0005930g0030 Nicotiana tabacum HOM05D007989 ORTHO05D010087 1.7e-23 113.6 180 39.4
arahy.Tifrunner.gnm1.ann1.92LXSJ Arachis hypogaea HOM05D007989 ORTHO05D010087 2.3e-23 113.2 191 44.0
Medtr3g086760 Medicago truncatula HOM05D007989 ORTHO05D010087 2.3e-23 113.2 194 41.2
Phvul.001G254200 Phaseolus vulgaris HOM05D007989 ORTHO05D010087 3.0e-23 112.8 175 41.1
Potri.007G097400 Populus trichocarpa HOM05D007989 ORTHO05D010087 3.0e-23 112.8 218 39.0
Glyma.18G014700 Glycine max HOM05D007989 ORTHO05D010087 3.9e-23 112.5 188 42.0
TAR628G0250 Trochodendron aralioides HOM05D007989 ORTHO05D010087 3.9e-23 112.5 186 41.4
Rhsim10G0168900 Rhododendron simsii HOM05D007989 ORTHO05D010087 1.5e-22 110.5 126 51.6
CAN.G905.6 Capsicum annuum HOM05D007989 ORTHO05D010087 1.9e-22 110.2 191 39.8
Ca_30637_v3 Cicer arietinum L. HOM05D007989 ORTHO05D010087 1.9e-22 110.2 185 42.7
arahy.Tifrunner.gnm1.ann1.FU6RJX Arachis hypogaea HOM05D007989 ORTHO05D010087 2.5e-22 109.8 182 45.6
vmacro12990 Vaccinium macrocarpon HOM05D007989 ORTHO05D010087 4.3e-22 109.0 122 51.6
Nitab4.5_0000241g0120 Nicotiana tabacum HOM05D007989 ORTHO05D010087 5.6e-22 108.6 183 38.8
Cpa.g.sc55.66 Carica papaya HOM05D007989 ORTHO05D010087 9.6e-22 107.8 194 40.2
Aqoxy6G00707 Aquilegia oxysepala HOM05D007989 ORTHO05D010087 2.1e-21 106.7 226 35.4
EL10Ac6g14814 Beta vulgaris HOM05D007989 ORTHO05D010087 2.1e-21 106.7 215 39.1
TPR.G30536 Trifolium pratense HOM05D007989 ORTHO05D010087 2.8e-21 106.3 186 40.9
Sabra07G0080700 Salix brachista HOM05D007989 ORTHO05D010087 3.6e-21 105.9 213 38.0
Actinidia06535 Actinidia chinensis HOM05D007989 ORTHO05D010087 6.2e-21 105.1 161 40.4
MBI06_g03317_MAGBIO Magnolia biondii HOM05D007989 ORTHO05D010087 3.1e-20 102.8 189 38.6
Glyma.11G242400 Glycine max HOM05D007989 ORTHO05D010087 2.6e-19 99.8 172 40.1
AUR62027199 Chenopodium quinoa HOM05D007989 ORTHO05D010087 7.6e-19 98.2 203 38.9
PSO541G3922 Papaver somniferum HOM05D007989 ORTHO05D010087 7.6e-19 98.2 190 33.7
VMungo1383G0535 Vigna mungo HOM05D007989 ORTHO05D010087 2.9e-18 96.3 199 38.2
PGSC0003DMG401016146 Solanum tuberosum HOM05D007989 ORTHO05D010087 3.8e-18 95.9 191 37.7
Hma1.2p1_0019F.1_g013880 Hydrangea macrophylla HOM05D007989 ORTHO05D010087 4.9e-18 95.5 210 35.7
Lalb_Chr08g0230941 Lupinus albus HOM05D007989 ORTHO05D010087 1.4e-17 94.0 138 46.4
Solyc11g010320.1 Solanum lycopersicum HOM05D007989 ORTHO05D010087 1.4e-17 94.0 188 36.7
Migut.H02322 Erythranthe guttata HOM05D007989 ORTHO05D010087 1.9e-17 93.6 179 35.8
PSO675G2967 Papaver somniferum HOM05D007989 ORTHO05D010087 2.4e-17 93.2 196 33.2
Sopen11g005100 Solanum pennellii HOM05D007989 ORTHO05D010087 2.4e-17 93.2 191 36.1
Oeu002158.1 Olea europaea HOM05D007989 ORTHO05D010087 7.1e-17 91.7 116 50.0
PGR004G2401 Punica granatum HOM05D007989 ORTHO05D010087 4.6e-16 89.0 164 36.6
CsaV3_4G009020 Cucumis sativus L. HOM05D007989 ORTHO05D010087 4.8e-13 79.0 171 31.6
MELO3C018999.2 Cucumis melo HOM05D007989 ORTHO05D010087 1.1e-12 77.8 172 30.8
ClCG10G008400 Citrullus lanatus HOM05D007989 ORTHO05D010087 1.8e-12 77.0 130 38.5
Zm00001eb033460 Zea mays HOM05D007989 ORTHO05D010087 5.3e-12 75.5 164 34.8
Ca_16505_v3 Cicer arietinum L. HOM05D007989 ORTHO05D010087 1.2e-11 74.3 119 44.5
Sc16g0000320 Simmondsia chinensis HOM05D007989 ORTHO05D010087 1.5e-11 73.9 135 38.5
HPP92_002319 Vanilla planifolia HOM05D007989 ORTHO05D010087 5.8e-11 72.0 185 30.3
Sed0027218 Sechium edule HOM05D007989 ORTHO05D010087 3.8e-10 69.3 69 55.1
AT2G46550 Arabidopsis thaliana HOM05D002476 ORTHO05D002652 4.9e-10 68.9 155 34.8
Thhalv10001490m.g Eutrema salsugineum HOM05D002476 ORTHO05D002652 4.9e-10 68.9 154 33.1
Os08g0483100 Oryza sativa ssp. japonica HOM05D007989 ORTHO05D010087 6.4e-10 68.6 176 33.5
Sp4g28600 Schrenkiella parvula HOM05D002476 ORTHO05D002652 8.4e-10 68.2 149 34.9
THA.LOC104817374 Tarenaya hassleriana HOM05D002476 ORTHO05D002652 1.1e-09 67.8 173 35.3
Sabra14G0073700 Salix brachista HOM05D002476 ORTHO05D002652 9.3e-09 64.7 201 30.3
A09p69030 Brassica napus HOM05D002476 ORTHO05D002652 1.2e-08 64.3 134 34.3
THA.LOC104825884 Tarenaya hassleriana HOM05D002476 ORTHO05D002652 1.2e-08 64.3 197 32.5
AL4G45980 Arabidopsis lyrata HOM05D002476 ORTHO05D002652 1.6e-08 63.9 149 34.9
BolC4t21790H Brassica oleracea HOM05D002476 ORTHO05D002652 1.6e-08 63.9 145 33.1
BolC8t52874H Brassica oleracea HOM05D002476 ORTHO05D002652 1.6e-08 63.9 132 34.8
Carub.0004s2927 Capsella rubella HOM05D002476 ORTHO05D002652 1.6e-08 63.9 144 33.3
Phvul.006G114600 Phaseolus vulgaris HOM05D002476 ORTHO05D002652 1.6e-08 63.9 212 29.2
BcaC02g12678 Brassica carinata HOM05D004435 ORTHO05D005103 2.1e-08 63.5 145 33.1
BraA10t42344Z Brassica rapa HOM05D002476 ORTHO05D002652 2.7e-08 63.2 148 31.8
AL1G11220 Arabidopsis lyrata HOM05D002476 ORTHO05D002652 3.5e-08 62.8 191 28.8
BcaC02g12672 Brassica carinata HOM05D002476 ORTHO05D002652 3.5e-08 62.8 150 34.7
C04p01370 Brassica napus HOM05D002476 ORTHO05D002652 6.0e-08 62.0 145 32.4
VMungo0540G0341 Vigna mungo HOM05D002476 ORTHO05D002652 6.0e-08 62.0 215 27.9
C05p00710 Brassica napus HOM05D002476 ORTHO05D002652 7.9e-08 61.6 132 32.6
Aa31LG1G10610 Aethionema arabicum HOM05D002476 ORTHO05D002652 1.0e-07 61.2 178 32.0
A05p01220 Brassica napus HOM05D002476 ORTHO05D002652 1.0e-07 61.2 145 35.2
A10p00670 Brassica napus HOM05D002476 ORTHO05D002652 1.0e-07 61.2 132 35.6
Manes.01G244700 Manihot esculenta HOM05D002476 ORTHO05D002652 1.0e-07 61.2 144 31.9
BcaC02g07017 Brassica carinata HOM05D002476 ORTHO05D002652 1.8e-07 60.5 173 31.2
BraA05t19123Z Brassica rapa HOM05D002476 ORTHO05D002652 1.8e-07 60.5 145 35.2
BraA09t42240Z Brassica rapa HOM05D002476 ORTHO05D002652 1.8e-07 60.5 132 34.8
CiPaw.02G041500 Carya illinoinensis HOM05D002476 ORTHO05D002652 1.8e-07 60.5 173 31.2
BolC4t28710H Brassica oleracea HOM05D002476 ORTHO05D002652 2.3e-07 60.1 146 34.2
PSO135G0353 Papaver somniferum HOM05D002476 ORTHO05D002652 2.3e-07 60.1 148 35.1
Potri.014G100300 Populus trichocarpa HOM05D002476 ORTHO05D002652 2.3e-07 60.1 201 31.3
Carub.0001s0097 Capsella rubella HOM05D002476 ORTHO05D002652 3.0e-07 59.7 185 30.3
SGA_v2.0_scaffold22G09959 Striga asiatica HOM05D002476 ORTHO05D002652 3.0e-07 59.7 139 33.1
Thhalv10008123m.g Eutrema salsugineum HOM05D002476 ORTHO05D002652 3.9e-07 59.3 142 34.5
PSO384G4994 Papaver somniferum HOM05D002476 ORTHO05D002652 5.1e-07 58.9 148 34.5
Aa31LG1G27930 Aethionema arabicum HOM05D002476 ORTHO05D002652 6.7e-07 58.5 142 34.5
CARHR141890 Cardamine hirsuta HOM05D002476 ORTHO05D002652 6.7e-07 58.5 138 35.5
Psat3g001840 Pisum sativum HOM05D002476 ORTHO05D002652 6.7e-07 58.5 212 26.9
TAR629G0955 Trochodendron aralioides HOM05D002476 ORTHO05D002652 6.7e-07 58.5 184 31.5
AT1G01240 Arabidopsis thaliana HOM05D002476 ORTHO05D002652 8.7e-07 58.2 185 30.3
Duzib138G1935 Durio zibethinus HOM05D002476 ORTHO05D002652 8.7e-07 58.2 166 31.3
Gohir.D07G142033 Gossypium hirsutum HOM05D002476 ORTHO05D002652 8.7e-07 58.2 149 34.9
Gorai.001G153700 Gossypium raimondii HOM05D002476 ORTHO05D002652 8.7e-07 58.2 149 34.9
Rhsim07G0003100 Rhododendron simsii HOM05D002476 ORTHO05D002652 8.7e-07 58.2 189 33.9
Sp1g01040 Schrenkiella parvula HOM05D002476 ORTHO05D002652 8.7e-07 58.2 135 32.6
FAN10G1192 Fragaria x ananassa HOM05D002476 ORTHO05D002652 1.1e-06 57.8 168 32.7
MD07G1152400 Malus domestica HOM05D002476 ORTHO05D002652 1.1e-06 57.8 161 32.3
Manes.05G021400 Manihot esculenta HOM05D002476 ORTHO05D002652 1.1e-06 57.8 194 28.4
CDE03G0022 Ceratophyllum demersum HOM05D002476 ORTHO05D002652 1.5e-06 57.4 69 46.4
Migut.N01533 Erythranthe guttata HOM05D002476 ORTHO05D002652 1.5e-06 57.4 165 29.7
FAN03G2932 Fragaria x ananassa HOM05D002476 ORTHO05D002652 1.5e-06 57.4 168 32.7
FAN06G0225 Fragaria x ananassa HOM05D002476 ORTHO05D002652 1.5e-06 57.4 168 32.7
C04p72220 Brassica napus HOM05D002476 ORTHO05D002652 1.9e-06 57.0 138 36.2
Psat4g214720 Pisum sativum HOM05D002476 ORTHO05D002652 1.9e-06 57.0 141 34.8
PGR031G2287 Punica granatum HOM05D002476 ORTHO05D002652 1.9e-06 57.0 172 30.8
CARHR001220 Cardamine hirsuta HOM05D002476 ORTHO05D002652 2.5e-06 56.6 133 35.3
FvH4_7g16870 Fragaria vesca HOM05D002476 ORTHO05D002652 2.5e-06 56.6 168 32.1
Lj1A1019T45 Lonicera japonica HOM05D002476 ORTHO05D002652 2.5e-06 56.6 149 32.2
Lj1A1021T48 Lonicera japonica HOM05D002476 ORTHO05D002652 2.5e-06 56.6 149 32.2
Lj1g0018688 Lotus japonicus HOM05D002476 ORTHO05D002652 2.5e-06 56.6 72 47.2
Atru.chr5.689 Acer truncatum HOM05D002476 ORTHO05D002652 3.3e-06 56.2 173 31.8
FAN10G2775 Fragaria x ananassa HOM05D002476 ORTHO05D002652 3.3e-06 56.2 168 32.1
arahy.Tifrunner.gnm1.ann1.SBQR86 Arachis hypogaea HOM05D002476 ORTHO05D002652 4.3e-06 55.8 124 33.9
BcaC02g07040 Brassica carinata HOM05D002476 ORTHO05D002652 4.3e-06 55.8 130 34.6
BcaNung06659 Brassica carinata HOM05D002476 ORTHO05D002652 4.3e-06 55.8 130 34.6
CDE04G0480 Ceratophyllum demersum HOM05D002476 ORTHO05D002652 4.3e-06 55.8 69 44.9
FAN01G1628 Fragaria x ananassa HOM05D002476 ORTHO05D002652 4.3e-06 55.8 168 32.1
Nn1g00295 Nelumbo nucifera HOM05D002476 ORTHO05D002652 4.3e-06 55.8 72 47.2
SEGI_39687 Sequoiadendron giganteum HOM05D002476 ORTHO05D002652 4.3e-06 55.8 71 47.9
THA.LOC104802082 Tarenaya hassleriana HOM05D002476 ORTHO05D002652 4.3e-06 55.8 65 49.2
Cpa.g.sc96.42 Carica papaya HOM05D002476 ORTHO05D002652 5.6e-06 55.5 70 45.7
HPP92_024144 Vanilla planifolia HOM05D002476 ORTHO05D002652 5.6e-06 55.5 164 28.7
BraA04t18904Z Brassica rapa HOM05D002476 ORTHO05D002652 7.4e-06 55.1 135 34.1
ECA234G4012 Erigeron canadensis HOM05D002476 ORTHO05D002652 7.4e-06 55.1 77 46.8
FAN06G4279 Fragaria x ananassa HOM05D002476 ORTHO05D002652 7.4e-06 55.1 168 32.1
Hund16720 Selenicereus undatus HOM05D002476 ORTHO05D002652 7.4e-06 55.1 188 29.3
unitig_8.g4994 Utricularia gibba HOM05D000331 ORTHO05D005958 9.6e-06 54.7 147 31.3


User provided reference genes

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