Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G0457 Cannabis sativa HOM05D003174 ORTHO05D003439 3.2e-167 591.7 296 100.0
MD04G1038200 Malus domestica HOM05D003174 ORTHO05D003439 1.1e-42 177.9 268 42.2
Cfa015779 Carpinus fangiana HOM05D003174 ORTHO05D003439 3.2e-42 176.4 239 47.3
CiPaw.02G056500 Carya illinoinensis HOM05D003174 ORTHO05D003439 5.5e-42 175.6 245 44.9
Haze_00715 Corylus avellana HOM05D003174 ORTHO05D003439 1.1e-39 167.9 236 46.6
Haze_00723 Corylus avellana HOM05D000268 ORTHO05D000261 3.3e-39 166.4 239 46.0
GSVIVG01013578001 Vitis vinifera HOM05D003174 ORTHO05D003439 2.2e-38 163.7 194 45.9
Dinv22692 Davidia involucrata HOM05D003174 ORTHO05D003439 3.5e-36 156.4 201 42.3
Atru.chr3.1551 Acer truncatum HOM05D003174 ORTHO05D003439 1.3e-35 154.5 229 38.9
Ciclev10021601m.g Citrus clementina HOM05D003174 ORTHO05D003439 1.7e-35 154.1 229 42.8
Hma1.2p1_0324F.1_g125650 Hydrangea macrophylla HOM05D003174 ORTHO05D003439 1.9e-34 150.6 171 45.6
Hma1.2p1_3259F.1_g334646 Hydrangea macrophylla HOM05D003174 ORTHO05D003439 1.9e-34 150.6 171 45.6
QL10p045460 Quercus lobata HOM05D003174 ORTHO05D003439 9.4e-34 148.3 239 39.7
TWI15G0472 Tripterygium wilfordii HOM05D003174 ORTHO05D003439 8.0e-33 145.2 163 49.7
TWI15G0304 Tripterygium wilfordii HOM05D003174 ORTHO05D003439 1.0e-32 144.8 163 49.7
Actinidia35877 Actinidia chinensis HOM05D003174 ORTHO05D003439 5.2e-32 142.5 171 45.6
PGR083G2046 Punica granatum HOM05D003174 ORTHO05D003439 7.5e-31 138.7 222 41.9
RcHm_v2.0_Chr4g0407561 Rosa chinensis HOM05D003174 ORTHO05D003439 9.7e-31 138.3 237 37.6
CsaV3_4G003560 Cucumis sativus L. HOM05D003174 ORTHO05D003439 4.8e-30 136.0 244 40.6
Potri.017G036100 Populus trichocarpa HOM05D003174 ORTHO05D003439 3.1e-29 133.3 261 34.1
TAR623G0639 Trochodendron aralioides HOM05D003174 ORTHO05D003439 5.3e-29 132.5 182 45.6
Sabra07G0100600 Salix brachista HOM05D003174 ORTHO05D003439 7.0e-29 132.1 160 46.2
Eucgr.I00627 Eucalyptus grandis HOM05D003174 ORTHO05D003439 9.1e-29 131.7 165 41.8
Gohir.A08G074200 Gossypium hirsutum HOM05D003174 ORTHO05D003439 1.2e-28 131.3 265 37.7
Thecc.05G002600 Theobroma cacao HOM05D003174 ORTHO05D003439 1.6e-28 131.0 213 39.0
TAR362G1036 Trochodendron aralioides HOM05D003174 ORTHO05D003439 2.7e-28 130.2 181 42.0
Gohir.D08G083400 Gossypium hirsutum HOM05D003174 ORTHO05D003439 7.7e-28 128.6 267 37.1
TAR629G3457 Trochodendron aralioides HOM05D003174 ORTHO05D003439 7.7e-28 128.6 180 43.9
Gorai.004G087600 Gossypium raimondii HOM05D003174 ORTHO05D003439 1.0e-27 128.3 267 37.1
Nn1g09826 Nelumbo nucifera HOM05D003174 ORTHO05D003439 1.0e-27 128.3 233 35.2
Nitab4.5_0000847g0080 Nicotiana tabacum HOM05D003174 ORTHO05D003439 1.0e-27 128.3 177 41.8
FvH4_4g11320 Fragaria vesca HOM05D003174 ORTHO05D003439 1.3e-27 127.9 191 38.7
THA.LOC104802302 Tarenaya hassleriana HOM05D003174 ORTHO05D003439 1.3e-27 127.9 218 38.5
MELO3C017697.2 Cucumis melo HOM05D003174 ORTHO05D003439 2.2e-27 127.1 155 45.2
FAN07G2661 Fragaria x ananassa HOM05D003174 ORTHO05D003439 2.2e-27 127.1 191 39.3
ClCG07G015840 Citrullus lanatus HOM05D003174 ORTHO05D003439 3.8e-27 126.3 200 40.5
Sopen04g007790 Solanum pennellii HOM05D003174 ORTHO05D003439 3.8e-27 126.3 177 42.9
Nitab4.5_0004701g0030 Nicotiana tabacum HOM05D003174 ORTHO05D003439 5.0e-27 125.9 188 38.8
Potri.007G124300 Populus trichocarpa HOM05D003174 ORTHO05D003439 5.0e-27 125.9 158 43.7
Sed0019898 Sechium edule HOM05D003174 ORTHO05D003439 6.5e-27 125.6 254 36.6
Solyc04g015710.3 Solanum lycopersicum HOM05D003174 ORTHO05D003439 8.5e-27 125.2 179 40.8
Duzib093G0200 Durio zibethinus HOM05D003174 ORTHO05D003439 1.5e-26 124.4 163 45.4
Peaxi162Scf00066g01134 Petunia axillaris HOM05D003174 ORTHO05D003439 3.2e-26 123.2 186 39.8
FAN17G0897 Fragaria x ananassa HOM05D003174 ORTHO05D003439 3.6e-25 119.8 263 33.8
CAN.G74.6 Capsicum annuum HOM05D003174 ORTHO05D003439 1.0e-24 118.2 180 38.3
Aa31LG2G10940 Aethionema arabicum HOM05D003174 ORTHO05D003439 3.0e-24 116.7 176 39.8
MBI17_g16533_MAGBIO Magnolia biondii HOM05D003174 ORTHO05D003439 4.0e-24 116.3 162 40.7
Cc06_g06750 Coffea canephora HOM05D003174 ORTHO05D003439 6.8e-24 115.5 169 40.8
Manes.04G049000 Manihot esculenta HOM05D003174 ORTHO05D003439 6.8e-24 115.5 142 45.1
BcaC09g49501 Brassica carinata HOM05D003174 ORTHO05D003439 2.0e-23 114.0 150 45.3
BolC1t03544H Brassica oleracea HOM05D003174 ORTHO05D003439 3.4e-23 113.2 150 45.3
BraA01t02958Z Brassica rapa HOM05D001877 ORTHO05D001886 5.7e-23 112.5 100 53.0
COL.COLO4_20117 Corchorus olitorius HOM05D003174 ORTHO05D003439 7.5e-23 112.1 201 36.3
AT1G58210 Arabidopsis thaliana HOM05D003174 ORTHO05D003439 2.2e-22 110.5 97 53.6
Rhsim02G0075700 Rhododendron simsii HOM05D003174 ORTHO05D003439 2.8e-22 110.2 220 37.3
AL2G18170 Arabidopsis lyrata HOM05D003174 ORTHO05D003439 4.8e-22 109.4 97 50.5
Thhalv10023956m.g Eutrema salsugineum HOM05D001877 ORTHO05D001886 1.1e-21 108.2 93 57.0
Sc02g0004510 Simmondsia chinensis HOM05D003174 ORTHO05D003439 4.1e-21 106.3 225 33.8
CSS0007124 Camellia sinensis var. sinensis HOM05D003174 ORTHO05D003439 5.4e-21 105.9 141 44.7
CARHR053810 Cardamine hirsuta HOM05D003174 ORTHO05D003439 7.0e-21 105.5 97 51.5
Sp2g05410 Schrenkiella parvula HOM05D001877 ORTHO05D001886 7.0e-21 105.5 93 53.8
Nn2g10415 Nelumbo nucifera HOM05D003174 ORTHO05D003439 9.1e-21 105.1 118 46.6
Prupe.1G188100 Prunus persica HOM05D003174 ORTHO05D003439 1.2e-20 104.8 179 37.4
SHI29135 Sapria himalayana HOM05D003174 ORTHO05D003439 1.2e-20 104.8 104 50.0
PGSC0003DMG400027274 Solanum tuberosum HOM05D003174 ORTHO05D003439 2.0e-20 104.0 130 43.1
QL09p046209 Quercus lobata HOM05D003174 ORTHO05D003439 3.5e-20 103.2 129 47.3
CDE07G1712 Ceratophyllum demersum HOM05D003174 ORTHO05D003439 4.5e-20 102.8 168 37.5
Ca_04778_v3 Cicer arietinum L. HOM05D003174 ORTHO05D003439 4.5e-20 102.8 129 44.2
GSVIVG01034205001 Vitis vinifera HOM05D003174 ORTHO05D003439 7.7e-20 102.1 104 51.9
Manes.08G078100 Manihot esculenta HOM05D003174 ORTHO05D003439 1.0e-19 101.7 115 50.4
BcaB04g20191 Brassica carinata HOM05D003174 ORTHO05D003439 1.3e-19 101.3 92 53.3
PSO675G7155 Papaver somniferum HOM05D003174 ORTHO05D003439 1.3e-19 101.3 179 36.3
EL10Ac4g08337 Beta vulgaris HOM05D003174 ORTHO05D003439 2.3e-19 100.5 223 30.5
Rhsim05G0189700 Rhododendron simsii HOM05D003174 ORTHO05D003439 2.3e-19 100.5 133 42.9
unitig_736.g22251 Utricularia gibba HOM05D003174 ORTHO05D003439 2.3e-19 100.5 94 50.0
Migut.H00512 Erythranthe guttata HOM05D003174 ORTHO05D003439 2.9e-19 100.1 94 51.1
Duzib106G0893 Durio zibethinus HOM05D003174 ORTHO05D003439 3.8e-19 99.8 105 50.5
CAN.G97.37 Capsicum annuum HOM05D003174 ORTHO05D003439 5.0e-19 99.4 205 33.7
TPR.G37089 Trifolium pratense HOM05D003174 ORTHO05D003439 5.0e-19 99.4 114 45.6
PSO541G3184 Papaver somniferum HOM05D003174 ORTHO05D003439 6.5e-19 99.0 186 35.5
arahy.Tifrunner.gnm1.ann1.T4VAVP Arachis hypogaea HOM05D003174 ORTHO05D003439 8.6e-19 98.6 108 48.1
TPR.G21831 Trifolium pratense HOM05D000319 ORTHO05D003439 8.6e-19 98.6 114 45.6
Actinidia11253 Actinidia chinensis HOM05D003174 ORTHO05D003439 1.5e-18 97.8 125 44.0
PSO384G3329 Papaver somniferum HOM05D035235 ORTHO05D003439 2.5e-18 97.1 129 43.4
arahy.Tifrunner.gnm1.ann1.FD13B1 Arachis hypogaea HOM05D003174 ORTHO05D003439 3.2e-18 96.7 109 48.6
QL07p031124 Quercus lobata HOM05D003174 ORTHO05D003439 3.2e-18 96.7 95 50.5
QL07p047847 Quercus lobata HOM05D003174 ORTHO05D003439 3.2e-18 96.7 95 50.5
Aqoxy2G01410 Aquilegia oxysepala HOM05D003174 ORTHO05D003439 4.2e-18 96.3 157 36.9
Aqoxy4G02974 Aquilegia oxysepala HOM05D003051 ORTHO05D003932 4.2e-18 96.3 157 36.9
arahy.Tifrunner.gnm1.ann1.IJS1VI Arachis hypogaea HOM05D003174 ORTHO05D003439 4.2e-18 96.3 109 48.6
arahy.Tifrunner.gnm1.ann1.Y7W1NJ Arachis hypogaea HOM05D003174 ORTHO05D003439 4.2e-18 96.3 109 48.6
PSO532G0060 Papaver somniferum HOM05D003174 ORTHO05D003439 4.2e-18 96.3 101 47.5
Thecc.05G042400 Theobroma cacao HOM05D003174 ORTHO05D003439 4.2e-18 96.3 131 45.0
TWI53G0288 Tripterygium wilfordii HOM05D003174 ORTHO05D003439 4.2e-18 96.3 119 46.2
arahy.Tifrunner.gnm1.ann1.6UZP51 Arachis hypogaea HOM05D003174 ORTHO05D003439 5.5e-18 95.9 109 47.7
SGA_v2.0_scaffold6G03139 Striga asiatica HOM05D003174 ORTHO05D003439 5.5e-18 95.9 127 40.9
Lj3g0014619 Lotus japonicus HOM05D003174 ORTHO05D003439 1.2e-17 94.7 135 43.0
Atru.chr3.120 Acer truncatum HOM05D003174 ORTHO05D003439 1.6e-17 94.4 116 41.4
PSO339G3795 Papaver somniferum HOM05D003174 ORTHO05D003439 1.6e-17 94.4 129 42.6
Medtr5g040080 Medicago truncatula HOM05D003174 ORTHO05D003439 2.1e-17 94.0 111 45.0
Medtr7g039520 Medicago truncatula HOM05D003174 ORTHO05D003439 2.1e-17 94.0 111 45.0
arahy.Tifrunner.gnm1.ann1.D9JBU2 Arachis hypogaea HOM05D003174 ORTHO05D003439 3.6e-17 93.2 132 40.9
arahy.Tifrunner.gnm1.ann1.7EM6TL Arachis hypogaea HOM05D003174 ORTHO05D003439 6.1e-17 92.4 139 37.4
Dinv35623 Davidia involucrata HOM05D003174 ORTHO05D003439 6.1e-17 92.4 112 45.5
Psat2g183360 Pisum sativum HOM05D003174 ORTHO05D003439 6.1e-17 92.4 113 38.9
Lsat_1_v5_gn_2_36541 Lactuca sativa HOM05D003174 ORTHO05D003439 8.0e-17 92.0 240 32.9
Gohir.A09G157600 Gossypium hirsutum HOM05D003174 ORTHO05D003439 1.0e-16 91.7 109 46.8
Sopen09g005270 Solanum pennellii HOM05D003174 ORTHO05D003439 1.0e-16 91.7 165 36.4
Phvul.007G157300 Phaseolus vulgaris HOM05D003174 ORTHO05D003439 1.4e-16 91.3 101 49.5
Solyc09g010550.4 Solanum lycopersicum HOM05D003174 ORTHO05D003439 1.4e-16 91.3 165 36.4
arahy.Tifrunner.gnm1.ann1.T81LQ1 Arachis hypogaea HOM05D003174 ORTHO05D003439 1.8e-16 90.9 91 50.5
PGSC0003DMG400008848 Solanum tuberosum HOM05D003174 ORTHO05D003439 1.8e-16 90.9 167 34.1
Lj1g0011268 Lotus japonicus HOM05D003174 ORTHO05D003439 2.3e-16 90.5 117 44.4
Nitab4.5_0000761g0050 Nicotiana tabacum HOM05D003174 ORTHO05D003439 2.3e-16 90.5 109 44.0
Nitab4.5_0004091g0070 Nicotiana tabacum HOM05D003174 ORTHO05D003439 2.3e-16 90.5 109 44.0
Prupe.6G252000 Prunus persica HOM05D003174 ORTHO05D003439 2.3e-16 90.5 114 47.4
Cfa017411 Carpinus fangiana HOM05D003174 ORTHO05D003439 3.0e-16 90.1 112 45.5
Glyma.13G131100 Glycine max HOM05D003174 ORTHO05D003439 3.0e-16 90.1 117 45.3
EL10Ac4g08332 Beta vulgaris HOM05D003174 ORTHO05D003439 4.0e-16 89.7 181 32.0
Peaxi162Scf00165g01840 Petunia axillaris HOM05D003174 ORTHO05D003439 4.0e-16 89.7 101 47.5
Gorai.006G174400 Gossypium raimondii HOM05D003174 ORTHO05D003439 6.8e-16 89.0 146 37.7
Phvul.011G086100 Phaseolus vulgaris HOM05D003174 ORTHO05D003439 6.8e-16 89.0 94 47.9
Haze_20757 Corylus avellana HOM05D003174 ORTHO05D003439 1.2e-15 88.2 94 48.9
Migut.C00381 Erythranthe guttata HOM05D003174 ORTHO05D003439 1.5e-15 87.8 111 41.4
Lj3A970G57 Lonicera japonica HOM05D003174 ORTHO05D003439 2.6e-15 87.0 140 40.0
AUR62019568 Chenopodium quinoa HOM05D003174 ORTHO05D003439 3.4e-15 86.7 256 25.8
Glyma.09G003000 Glycine max HOM05D003174 ORTHO05D003439 3.4e-15 86.7 106 44.3
HanXRQChr13g0395041 Helianthus annuus HOM05D003174 ORTHO05D003439 4.4e-15 86.3 222 32.4
CANSAT21G1894 Cannabis sativa HOM05D003174 ORTHO05D003439 5.7e-15 85.9 95 45.3
Lalb_Chr06g0170971 Lupinus albus HOM05D003174 ORTHO05D003439 7.5e-15 85.5 134 44.8
Cpa.g.sc260.5 Carica papaya HOM05D003174 ORTHO05D003439 9.8e-15 85.1 96 49.0
Sabra04G0051000 Salix brachista HOM05D003174 ORTHO05D003439 1.3e-14 84.7 93 47.3
VMungo1127G0302 Vigna mungo HOM05D003174 ORTHO05D003439 1.3e-14 84.7 120 37.5
HanXRQChr13g0395031 Helianthus annuus HOM05D003174 ORTHO05D003439 1.7e-14 84.3 280 28.9
MSTRG.924 Avicennia marina HOM05D003174 ORTHO05D003439 2.8e-14 83.6 94 42.6
MD04G1124900 Malus domestica HOM05D003174 ORTHO05D003439 2.8e-14 83.6 100 48.0
Ciclev10011079m.g Citrus clementina HOM05D003174 ORTHO05D003439 4.9e-14 82.8 110 44.5
Eucgr.A00550 Eucalyptus grandis HOM05D003174 ORTHO05D003439 6.3e-14 82.4 107 43.9
Potri.004G077400 Populus trichocarpa HOM05D003174 ORTHO05D003439 6.3e-14 82.4 149 34.9
DCAR_025649 Daucus carota HOM05D003174 ORTHO05D003439 8.3e-14 82.0 164 34.8
PGR004G2807 Punica granatum HOM05D003174 ORTHO05D003439 8.3e-14 82.0 125 39.2
SGA_v2.0_scaffold204G41637 Striga asiatica HOM05D003174 ORTHO05D003439 8.3e-14 82.0 192 29.7
AUR62043191 Chenopodium quinoa HOM05D003174 ORTHO05D003439 1.4e-13 81.3 186 31.7
Psat0s2930g0040 Pisum sativum HOM05D003174 ORTHO05D003439 3.1e-13 80.1 131 34.4
PGSC0003DMG400027275 Solanum tuberosum HOM05D007490 ORTHO05D008750 3.1e-13 80.1 177 33.9
RcHm_v2.0_Chr3g0467041 Rosa chinensis HOM05D003174 ORTHO05D003439 1.2e-12 78.2 112 42.0
Cc06_g02840 Coffea canephora HOM05D003174 ORTHO05D003439 2.0e-12 77.4 93 47.3
Eucgr.J00597 Eucalyptus grandis HOM05D003174 ORTHO05D003439 4.5e-12 76.3 110 36.4
THA.LOC104816287 Tarenaya hassleriana HOM05D003174 ORTHO05D003439 2.3e-11 73.9 150 36.0
vmacro08698 Vaccinium macrocarpon HOM05D003174 ORTHO05D003439 2.3e-11 73.9 98 42.9
Glyma.10G043400 Glycine max HOM05D003174 ORTHO05D003439 1.9e-10 70.9 82 45.1
Os01g0530300 Oryza sativa ssp. japonica HOM05D003174 ORTHO05D003439 1.9e-10 70.9 105 38.1
BraA02t04720Z Brassica rapa HOM05D003174 ORTHO05D003439 4.3e-10 69.7 126 32.5
CARHR210840 Cardamine hirsuta HOM05D003174 ORTHO05D003439 1.2e-09 68.2 133 32.3
FAN09G4813 Fragaria x ananassa HOM05D003174 ORTHO05D003439 1.2e-09 68.2 119 37.0
BcaB05g21888 Brassica carinata HOM05D003174 ORTHO05D003439 2.1e-09 67.4 91 37.4
Carub.0002s0640 Capsella rubella HOM05D003174 ORTHO05D003439 2.8e-09 67.0 87 42.5
FAN14G5980 Fragaria x ananassa HOM05D003174 ORTHO05D003439 2.8e-09 67.0 128 35.2
Carub.0006s0132 Capsella rubella HOM05D003174 ORTHO05D003439 3.6e-09 66.6 131 33.6
Thhalv10015290m.g Eutrema salsugineum HOM05D003174 ORTHO05D003439 6.1e-09 65.9 134 32.8
FvH4_6g25230 Fragaria vesca HOM05D003174 ORTHO05D003439 6.1e-09 65.9 111 37.8
Aa31LG1G22280 Aethionema arabicum HOM05D003174 ORTHO05D003439 8.0e-09 65.5 96 37.5
BcaC03g13058 Brassica carinata HOM05D003174 ORTHO05D003439 1.0e-08 65.1 92 37.0
C02p00500 Brassica napus HOM05D003174 ORTHO05D003439 1.0e-08 65.1 92 37.0
BolC2t06049H Brassica oleracea HOM05D003174 ORTHO05D003439 1.4e-08 64.7 92 37.0
FAN02G1934 Fragaria x ananassa HOM05D003174 ORTHO05D003439 1.4e-08 64.7 110 36.4
FAN05G2164 Fragaria x ananassa HOM05D003174 ORTHO05D003439 1.4e-08 64.7 110 36.4
Os04g0347900 Oryza sativa ssp. japonica HOM05D003174 ORTHO05D003439 1.8e-08 64.3 91 36.3
FAN05G5174 Fragaria x ananassa HOM05D003174 ORTHO05D003439 3.0e-08 63.5 93 39.8
VMungo1127G2141 Vigna mungo HOM05D003174 ORTHO05D003439 3.0e-08 63.5 83 36.1
Sp6g39990 Schrenkiella parvula HOM05D003174 ORTHO05D003439 4.0e-08 63.2 103 34.0
SHI12657 Sapria himalayana HOM05D003174 ORTHO05D003439 6.8e-08 62.4 118 31.4
ATR0019G037 Amborella trichopoda HOM05D003174 ORTHO05D003439 4.4e-07 59.7 152 32.9
AT5G02520 Arabidopsis thaliana HOM05D003174 ORTHO05D003439 5.7e-07 59.3 93 35.5
AL6G11780 Arabidopsis lyrata HOM05D003174 ORTHO05D003439 9.8e-07 58.5 117 31.6
SEGI_15530 Sequoiadendron giganteum HOM05D057352 ORTHO05D003439 9.8e-07 58.5 111 32.4
Zm00001eb310180 Zea mays HOM05D003174 ORTHO05D003439 2.9e-06 57.0 121 32.2


User provided reference genes

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