Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G0440 Cannabis sativa HOM05D005553 ORTHO05D006866 0.0e+00 1214.1 605 100.0
MD10G1161200 Malus domestica HOM05D005553 ORTHO05D006866 2.3e-260 902.1 609 73.6
Prupe.8G200200 Prunus persica HOM05D005553 ORTHO05D006866 2.3e-260 902.1 603 74.8
Cfa002842 Carpinus fangiana HOM05D005553 ORTHO05D006866 5.6e-259 897.5 591 75.5
Dinv12662 Davidia involucrata HOM05D005553 ORTHO05D006866 1.5e-248 862.8 614 70.5
RcHm_v2.0_Chr6g0284311 Rosa chinensis HOM05D005553 ORTHO05D006866 3.2e-246 855.1 604 71.5
CSS0002030 Camellia sinensis var. sinensis HOM05D005553 ORTHO05D006866 2.5e-243 845.5 609 69.8
FAN27G0725 Fragaria x ananassa HOM05D005553 ORTHO05D006866 2.6e-240 835.5 597 70.4
TWI36G0825 Tripterygium wilfordii HOM05D005553 ORTHO05D006866 1.7e-239 832.8 599 70.1
PGR044G2083 Punica granatum HOM05D005553 ORTHO05D006866 1.8e-236 822.8 601 67.7
CsaV3_6G002380 Cucumis sativus L. HOM05D005553 ORTHO05D006866 3.9e-236 821.6 602 66.8
Eucgr.K02143 Eucalyptus grandis HOM05D005553 ORTHO05D006866 3.9e-236 821.6 604 66.6
FvH4_2g18680 Fragaria vesca HOM05D005553 ORTHO05D006866 7.4e-235 817.4 597 69.0
FAN24G0205 Fragaria x ananassa HOM05D005553 ORTHO05D006866 7.4e-235 817.4 597 69.0
Hma1.2p1_1018F.1_g248400 Hydrangea macrophylla HOM05D005553 ORTHO05D006866 8.1e-234 813.9 570 70.2
vmacro14742 Vaccinium macrocarpon HOM05D005553 ORTHO05D006866 1.4e-233 813.1 597 68.8
Cpa.g.sc8.131 Carica papaya HOM05D005553 ORTHO05D006866 2.6e-232 808.9 610 67.0
Manes.13G047900 Manihot esculenta HOM05D005553 ORTHO05D006866 2.2e-231 805.8 621 67.0
Nn1g07927 Nelumbo nucifera HOM05D005553 ORTHO05D006866 3.8e-231 805.1 609 67.2
Ah.08g214520 Amaranthus hybridus HOM05D005553 ORTHO05D006866 7.1e-230 800.8 600 65.2
CSS0038931 Camellia sinensis var. sinensis HOM05D005553 ORTHO05D006866 3.5e-229 798.5 609 67.2
GSVIVG01038357001 Vitis vinifera HOM05D005553 ORTHO05D006866 1.1e-227 793.5 580 69.7
CiPaw.03G146800 Carya illinoinensis HOM05D005553 ORTHO05D006866 1.3e-226 790.0 527 74.0
Aqoxy2G03234 Aquilegia oxysepala HOM05D005553 ORTHO05D006866 1.6e-226 789.6 596 64.1
Sc05g0002010 Simmondsia chinensis HOM05D005553 ORTHO05D006866 1.6e-226 789.6 604 64.9
Lalb_Chr03g0041571 Lupinus albus HOM05D005553 ORTHO05D006866 2.8e-226 788.9 599 66.1
PGSC0003DMG400017493 Solanum tuberosum HOM05D005553 ORTHO05D006866 1.1e-225 786.9 604 65.2
Ciclev10019403m.g Citrus clementina HOM05D005553 ORTHO05D006866 1.4e-225 786.6 606 67.7
Oeu023098.1 Olea europaea HOM05D005553 ORTHO05D006866 1.4e-225 786.6 599 65.4
Sopen09g022770 Solanum pennellii HOM05D005553 ORTHO05D006866 4.1e-225 785.0 604 65.2
Hund05570 Selenicereus undatus HOM05D005553 ORTHO05D006866 9.0e-225 783.9 600 64.5
QL09p052121 Quercus lobata HOM05D005553 ORTHO05D006866 1.5e-224 783.1 576 69.6
QL09p052989 Quercus lobata HOM05D005553 ORTHO05D006866 2.0e-224 782.7 576 69.4
Solyc09g059600.4 Solanum lycopersicum HOM05D005553 ORTHO05D006866 2.0e-224 782.7 609 65.0
Glyma.18G166600 Glycine max HOM05D005553 ORTHO05D006866 4.5e-224 781.6 609 65.4
Nitab4.5_0000045g0420 Nicotiana tabacum HOM05D005553 ORTHO05D006866 4.5e-224 781.6 627 63.8
arahy.Tifrunner.gnm1.ann1.K25WW2 Arachis hypogaea HOM05D005553 ORTHO05D006866 1.3e-223 780.0 605 65.3
Phvul.008G130400 Phaseolus vulgaris HOM05D005553 ORTHO05D006866 1.3e-223 780.0 604 66.1
arahy.Tifrunner.gnm1.ann1.T3HSIJ Arachis hypogaea HOM05D005553 ORTHO05D006866 1.7e-223 779.6 616 64.8
VMungo1383G1602 Vigna mungo HOM05D005553 ORTHO05D006866 6.5e-223 777.7 607 64.9
Thecc.01G222300 Theobroma cacao HOM05D005553 ORTHO05D006866 1.4e-222 776.5 598 67.6
MSTRG.17999 Avicennia marina HOM05D005553 ORTHO05D006866 1.9e-222 776.2 604 64.6
Medtr7g056117 Medicago truncatula HOM05D005553 ORTHO05D006866 2.5e-222 775.8 613 64.6
Glyma.08G349700 Glycine max HOM05D005553 ORTHO05D006866 5.5e-222 774.6 601 65.6
Cc01_g16820 Coffea canephora HOM05D005553 ORTHO05D006866 2.1e-221 772.7 579 67.5
Ca_24091_v3 Cicer arietinum L. HOM05D005553 ORTHO05D006866 2.7e-221 772.3 607 64.7
Duzib138G1946 Durio zibethinus HOM05D005553 ORTHO05D006866 7.9e-221 770.8 589 67.1
Sed0021986 Sechium edule HOM05D005553 ORTHO05D006866 6.7e-220 767.7 576 67.7
Lj1g0021333 Lotus japonicus HOM05D005553 ORTHO05D006866 8.7e-220 767.3 600 65.8
PSO063G5023 Papaver somniferum HOM05D005553 ORTHO05D006866 8.7e-220 767.3 602 62.3
PSO782G3165 Papaver somniferum HOM05D005553 ORTHO05D006866 8.7e-220 767.3 602 62.6
HanXRQChr07g0189551 Helianthus annuus HOM05D005553 ORTHO05D006866 5.7e-219 764.6 611 64.0
Potri.002G245000 Populus trichocarpa HOM05D005553 ORTHO05D006866 1.3e-218 763.5 620 66.3
COL.COLO4_15644 Corchorus olitorius HOM05D005553 ORTHO05D006866 1.6e-218 763.1 599 66.6
Haze_24835 Corylus avellana HOM05D005553 ORTHO05D006866 1.1e-217 760.4 590 66.9
Gohir.D07G206400 Gossypium hirsutum HOM05D005553 ORTHO05D006866 3.1e-217 758.8 608 65.3
AL3G18430 Arabidopsis lyrata HOM05D005553 ORTHO05D006866 5.3e-217 758.1 596 64.1
Gorai.001G232700 Gossypium raimondii HOM05D005553 ORTHO05D006866 5.3e-217 758.1 609 65.4
CAN.G5.44 Capsicum annuum HOM05D005553 ORTHO05D006866 1.2e-216 756.9 603 63.0
Sabra02G0186400 Salix brachista HOM05D005553 ORTHO05D006866 1.2e-216 756.9 593 67.6
Sp3g06120 Schrenkiella parvula HOM05D005553 ORTHO05D006866 1.2e-216 756.9 583 64.5
THA.LOC104818968 Tarenaya hassleriana HOM05D005553 ORTHO05D006866 1.2e-216 756.9 603 63.5
BcaC05g29748 Brassica carinata HOM05D005553 ORTHO05D006866 2.0e-216 756.1 579 64.8
Thhalv10020331m.g Eutrema salsugineum HOM05D005553 ORTHO05D006866 1.0e-215 753.8 600 63.0
Gohir.A07G200000 Gossypium hirsutum HOM05D005553 ORTHO05D006866 1.0e-215 753.8 608 65.0
CARHR081820 Cardamine hirsuta HOM05D005553 ORTHO05D006866 1.3e-215 753.4 601 63.1
Lj2A1127T50 Lonicera japonica HOM05D005553 ORTHO05D006866 2.9e-215 752.3 577 65.9
AT3G07180 Arabidopsis thaliana HOM05D005553 ORTHO05D006866 5.0e-215 751.5 594 63.5
Carub.0003s0670 Capsella rubella HOM05D005553 ORTHO05D006866 6.5e-215 751.1 581 63.2
A05p41030 Brassica napus HOM05D005553 ORTHO05D006866 1.4e-214 750.0 583 64.7
Migut.N00626 Erythranthe guttata HOM05D005553 ORTHO05D006866 4.2e-214 748.4 608 61.2
Atru.chr6.1417 Acer truncatum HOM05D005553 ORTHO05D006866 1.2e-213 746.9 595 65.5
FAN15G3597 Fragaria x ananassa HOM05D005553 ORTHO05D006866 1.8e-212 743.0 648 61.6
C05p60190 Brassica napus HOM05D005553 ORTHO05D006866 3.0e-212 742.3 579 64.8
BolC5t34669H Brassica oleracea HOM05D005553 ORTHO05D006866 6.7e-212 741.1 579 64.6
BraA05t22829Z Brassica rapa HOM05D005553 ORTHO05D006866 6.7e-212 741.1 583 64.3
ClCG09G008830 Citrullus lanatus HOM05D005553 ORTHO05D006866 1.3e-210 736.9 604 62.7
AL384U10020 Arabidopsis lyrata HOM05D005553 ORTHO05D006866 2.8e-210 735.7 579 63.4
Nitab4.5_0000345g0010 Nicotiana tabacum HOM05D005553 ORTHO05D006866 2.8e-210 735.7 673 58.2
BcaC05g29847 Brassica carinata HOM05D005553 ORTHO05D006866 4.8e-210 734.9 579 64.1
Psat3g147960 Pisum sativum HOM05D005553 ORTHO05D006866 8.2e-210 734.2 596 62.8
MELO3C020015.2 Cucumis melo HOM05D005553 ORTHO05D006866 2.6e-208 729.2 553 65.1
Lsat_1_v5_gn_9_13060 Lactuca sativa HOM05D005553 ORTHO05D006866 7.7e-208 727.6 611 62.0
MBI06_g04543_MAGBIO Magnolia biondii HOM05D005553 ORTHO05D006866 1.1e-206 723.8 584 62.7
Aa31LG5G17740 Aethionema arabicum HOM05D005553 ORTHO05D006866 3.2e-206 722.2 604 60.9
EL10Ac7g17878 Beta vulgaris HOM05D005553 ORTHO05D006866 1.2e-205 720.3 605 60.7
Haze_24838 Corylus avellana HOM05D005553 ORTHO05D006866 2.1e-205 719.5 592 63.3
PSO339G3667 Papaver somniferum HOM05D005553 ORTHO05D006866 7.9e-205 717.6 575 61.9
ECA247G0750 Erigeron canadensis HOM05D005553 ORTHO05D006866 7.2e-198 694.5 605 60.5
Rhsim01G0254300 Rhododendron simsii HOM05D005553 ORTHO05D006866 7.2e-198 694.5 544 66.9
DCAR_023559 Daucus carota HOM05D005553 ORTHO05D006866 6.1e-197 691.4 568 62.7
arahy.Tifrunner.gnm1.ann1.84RPTF Arachis hypogaea HOM05D005553 ORTHO05D006866 6.7e-196 688.0 590 60.5
arahy.Tifrunner.gnm1.ann1.62F6YN Arachis hypogaea HOM05D005553 ORTHO05D006866 9.7e-195 684.1 581 60.9
Peaxi162Scf00238g00217 Petunia axillaris HOM05D005553 ORTHO05D006866 1.5e-190 670.2 589 60.6
AUR62001118 Chenopodium quinoa HOM05D005553 ORTHO05D006866 3.2e-190 669.1 603 57.0
Actinidia09473 Actinidia chinensis HOM05D005553 ORTHO05D006866 1.2e-189 667.2 602 58.8
Duzib211G0174 Durio zibethinus HOM05D005553 ORTHO05D006866 8.0e-189 664.5 542 64.8
Actinidia23714 Actinidia chinensis HOM05D005553 ORTHO05D006866 2.8e-186 656.0 578 60.7
CDE08G1475 Ceratophyllum demersum HOM05D005553 ORTHO05D006866 6.3e-186 654.8 605 54.7
ATR0609G062 Amborella trichopoda HOM05D005553 ORTHO05D006866 1.6e-181 640.2 583 56.6
Os01g0907300 Oryza sativa ssp. japonica HOM05D005553 ORTHO05D006866 1.3e-178 630.6 598 56.0
TPR.G6452 Trifolium pratense HOM05D005553 ORTHO05D006866 7.3e-174 614.8 565 58.2
AUR62016558 Chenopodium quinoa HOM05D005553 ORTHO05D006866 1.2e-173 614.0 603 53.7
TAR365G1156 Trochodendron aralioides HOM05D005553 ORTHO05D006866 7.5e-171 604.7 443 68.4
arahy.Tifrunner.gnm1.ann1.B0WXN9 Arachis hypogaea HOM05D005553 ORTHO05D006866 1.3e-170 604.0 592 54.2
Zm00001eb365330 Zea mays HOM05D005553 ORTHO05D006866 2.4e-169 599.7 586 54.6
DCAR_000631 Daucus carota HOM05D005553 ORTHO05D006866 9.5e-158 561.2 568 54.0
SHI14561 Sapria himalayana HOM05D005553 ORTHO05D006866 1.6e-157 560.5 544 55.9
SalBow3G3653 Salvia bowleyana HOM05D005553 ORTHO05D006866 3.7e-154 549.3 467 59.1
Potri.002G244801 Populus trichocarpa HOM05D005553 ORTHO05D006866 1.2e-152 544.3 344 78.8
Dinv19184 Davidia involucrata HOM05D005553 ORTHO05D006866 1.6e-152 543.9 430 62.1
Pp3c13_19160 Physcomitrium patens HOM05D005553 ORTHO05D006866 1.1e-126 458.0 589 45.7
Mapoly0045s0104 Marchantia polymorpha HOM05D005553 ORTHO05D006866 2.5e-113 413.7 609 37.9
unitig_0.g372 Utricularia gibba HOM05D005553 ORTHO05D006866 7.9e-112 408.7 513 44.8
AagrBONN_evm.TU.Sc2ySwM_117.1632 Anthoceros agrestis HOM05D005553 ORTHO05D006866 9.7e-110 401.7 559 41.1
SMO353G0187 Selaginella moellendorffii HOM05D005553 ORTHO05D006866 9.0e-108 395.2 579 38.9
arahy.Tifrunner.gnm1.ann1.ET68I8 Arachis hypogaea HOM05D005553 ORTHO05D006866 1.2e-104 384.8 360 55.0
arahy.Tifrunner.gnm1.ann1.SPK719 Arachis hypogaea HOM05D005553 ORTHO05D006866 2.9e-98 363.6 383 50.4
QL05p022419 Quercus lobata HOM05D005553 ORTHO05D006866 7.4e-94 349.0 252 67.9
arahy.Tifrunner.gnm1.ann1.YI9T1V Arachis hypogaea HOM05D005553 ORTHO05D006866 1.5e-91 341.3 397 48.1
QL02p097148 Quercus lobata HOM05D005553 ORTHO05D006866 2.0e-78 297.7 242 62.0
HPP92_001419 Vanilla planifolia HOM05D005553 ORTHO05D008496 1.6e-72 278.1 233 62.2
CBR_g46590 Chara braunii HOM05D005553 ORTHO05D006866 3.1e-68 263.8 454 35.0
arahy.Tifrunner.gnm1.ann1.DF0SS3 Arachis hypogaea HOM05D005553 ORTHO05D006866 5.4e-68 263.1 362 43.1
arahy.Tifrunner.gnm1.ann1.3A36EA Arachis hypogaea HOM05D005553 ORTHO05D006866 2.8e-61 240.7 182 68.7
HPP92_001410 Vanilla planifolia HOM05D005553 ORTHO05D006866 1.6e-59 235.0 202 57.4
SEGI_35984 Sequoiadendron giganteum HOM05D005553 ORTHO05D006866 8.3e-37 159.5 268 37.7
EL10Ac7g17877 Beta vulgaris HOM05D005553 ORTHO05D006866 3.0e-34 151.0 225 43.6
arahy.Tifrunner.gnm1.ann1.UUY44J Arachis hypogaea HOM05D005553 ORTHO05D006866 1.4e-31 142.1 231 37.2
SEGI_34191 Sequoiadendron giganteum HOM05D005553 ORTHO05D006866 3.4e-30 137.5 148 48.6
unitig_0.g371 Utricularia gibba HOM05D005553 ORTHO05D006866 5.2e-23 113.6 71 73.2
Cfa026900 Carpinus fangiana HOM05D005553 ORTHO05D006866 2.9e-21 107.8 326 27.3
Cre01.g013400 Chlamydomonas reinhardtii HOM05D005553 ORTHO05D006866 1.4e-20 105.5 420 24.5
A05p41020 Brassica napus HOM05D005553 ORTHO05D006866 3.2e-20 104.4 228 36.8
TAR365G0595 Trochodendron aralioides HOM05D005553 ORTHO05D006866 1.3e-16 92.4 90 53.3
TPR.G39542 Trifolium pratense HOM05D005553 ORTHO05D006866 1.8e-15 88.6 45 80.0
MCO09G019 Micromonas commoda HOM05D005553 ORTHO05D006866 1.3e-13 82.4 150 36.0
VMungo1383G0327 Vigna mungo HOM05D005553 ORTHO05D006866 1.5e-09 68.9 59 57.6


User provided reference genes

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