Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G0425 Cannabis sativa HOM05D004782 ORTHO05D005498 3.1e-132 475.3 273 100.0
Prupe.3G294600 Prunus persica HOM05D004782 ORTHO05D005498 6.1e-80 301.6 273 64.8
Sabra16G0222000 Salix brachista HOM05D004782 ORTHO05D005498 1.0e-79 300.8 268 62.7
Haze_14764 Corylus avellana HOM05D004782 ORTHO05D005498 2.6e-78 296.2 278 62.2
MD17G1021600 Malus domestica HOM05D004782 ORTHO05D005498 1.1e-76 290.8 267 63.7
Ciclev10018402m.g Citrus clementina HOM05D004782 ORTHO05D005498 1.4e-76 290.4 264 63.6
MD09G1021700 Malus domestica HOM05D004782 ORTHO05D005498 2.0e-75 286.6 272 61.8
TWI36G0764 Tripterygium wilfordii HOM05D004782 ORTHO05D005498 2.9e-74 282.7 269 59.5
Potri.001G342400 Populus trichocarpa HOM05D004782 ORTHO05D005498 3.9e-74 282.3 267 62.5
RcHm_v2.0_Chr2g0173401 Rosa chinensis HOM05D004782 ORTHO05D005498 1.1e-73 280.8 280 63.9
Atru.chr6.2436 Acer truncatum HOM05D004782 ORTHO05D005498 3.3e-73 279.3 282 59.9
Lalb_Chr14g0362901 Lupinus albus HOM05D004782 ORTHO05D005498 3.3e-73 279.3 268 61.6
Cfa007334 Carpinus fangiana HOM05D004782 ORTHO05D005498 5.6e-73 278.5 269 56.1
TPR.G1089 Trifolium pratense HOM05D004782 ORTHO05D005498 5.6e-73 278.5 272 60.7
Dinv25722 Davidia involucrata HOM05D004782 ORTHO05D005498 8.0e-72 274.6 270 56.7
FvH4_6g51920 Fragaria vesca HOM05D004782 ORTHO05D005498 1.4e-71 273.9 270 63.0
Hma1.2p1_0818F.1_g223300 Hydrangea macrophylla HOM05D004782 ORTHO05D005498 1.2e-70 270.8 274 54.7
FAN14G2962 Fragaria x ananassa HOM05D004782 ORTHO05D005498 1.5e-70 270.4 273 60.8
QL02p073881 Quercus lobata HOM05D004782 ORTHO05D005498 3.4e-70 269.2 270 65.2
Ca_07059_v3 Cicer arietinum L. HOM05D004782 ORTHO05D005498 2.9e-69 266.2 277 60.3
VMungo0647G2046 Vigna mungo HOM05D004782 ORTHO05D005498 6.4e-69 265.0 292 57.2
Manes.15G152300 Manihot esculenta HOM05D004782 ORTHO05D005498 8.3e-69 264.6 273 60.4
Phvul.008G228200 Phaseolus vulgaris HOM05D004782 ORTHO05D005498 8.3e-69 264.6 297 54.9
Duzib147G0999 Durio zibethinus HOM05D004782 ORTHO05D005498 2.0e-67 260.0 267 60.3
COL.COLO4_29185 Corchorus olitorius HOM05D004782 ORTHO05D005498 6.0e-67 258.5 263 55.9
FAN05G5758 Fragaria x ananassa HOM05D004782 ORTHO05D005498 7.8e-67 258.1 272 58.1
Lj1g0001798 Lotus japonicus HOM05D004782 ORTHO05D005498 1.0e-66 257.7 270 59.3
Cpa.g.sc130.76 Carica papaya HOM05D004782 ORTHO05D005498 2.3e-66 256.5 266 59.0
Psat5g038480 Pisum sativum HOM05D004782 ORTHO05D005498 3.9e-66 255.8 276 56.9
Nn3g16678 Nelumbo nucifera HOM05D004782 ORTHO05D005498 5.0e-66 255.4 264 54.2
Aqoxy3G01250 Aquilegia oxysepala HOM05D004782 ORTHO05D005498 8.6e-66 254.6 268 56.0
Rhsim08G0048200 Rhododendron simsii HOM05D004782 ORTHO05D005498 2.5e-65 253.1 264 53.4
EL10Ac6g14096 Beta vulgaris HOM05D004782 ORTHO05D005498 4.3e-65 252.3 265 57.7
Hund13000 Selenicereus undatus HOM05D004782 ORTHO05D005498 5.6e-65 251.9 272 55.5
CSS0038869 Camellia sinensis var. sinensis HOM05D004782 ORTHO05D005498 7.3e-65 251.5 267 56.2
CiPaw.03G046200 Carya illinoinensis HOM05D004782 ORTHO05D005498 9.5e-65 251.1 216 65.3
Medtr7g033120 Medicago truncatula HOM05D004782 ORTHO05D005498 1.6e-64 250.4 272 56.6
ClCG10G013750 Citrullus lanatus HOM05D004782 ORTHO05D005498 2.1e-64 250.0 269 59.9
AUR62028428 Chenopodium quinoa HOM05D004782 ORTHO05D005498 8.0e-64 248.1 264 55.7
Thecc.04G020400 Theobroma cacao HOM05D004782 ORTHO05D005498 8.0e-64 248.1 267 59.6
Gorai.011G094100 Gossypium raimondii HOM05D004782 ORTHO05D005498 2.3e-63 246.5 269 61.0
Ah.02g128240 Amaranthus hybridus HOM05D004782 ORTHO05D005498 5.2e-63 245.4 269 57.6
MELO3C026593.2 Cucumis melo HOM05D004782 ORTHO05D005498 5.2e-63 245.4 268 63.1
Gohir.D10G085900 Gossypium hirsutum HOM05D004782 ORTHO05D005498 6.8e-63 245.0 268 59.0
TAR374G0154 Trochodendron aralioides HOM05D004782 ORTHO05D005498 6.8e-63 245.0 273 53.8
Eucgr.I01726 Eucalyptus grandis HOM05D004782 ORTHO05D005498 8.9e-63 244.6 263 57.8
FAN02G4014 Fragaria x ananassa HOM05D004782 ORTHO05D005498 1.2e-62 244.2 282 58.5
Dinv33420 Davidia involucrata HOM05D004782 ORTHO05D005498 1.5e-62 243.8 211 65.4
Glyma.16G068500 Glycine max HOM05D004782 ORTHO05D005498 1.5e-62 243.8 291 53.6
Actinidia18440 Actinidia chinensis HOM05D004782 ORTHO05D005498 3.4e-62 242.7 223 59.2
CAN.G473.32 Capsicum annuum HOM05D004782 ORTHO05D005498 4.4e-62 242.3 269 51.3
Cc07_g00060 Coffea canephora HOM05D004782 ORTHO05D005498 5.8e-62 241.9 265 51.7
CsaV3_3G042920 Cucumis sativus L. HOM05D004782 ORTHO05D005498 5.8e-62 241.9 265 61.9
Migut.H00022 Erythranthe guttata HOM05D004782 ORTHO05D005498 5.8e-62 241.9 268 53.7
Sc03g0007250 Simmondsia chinensis HOM05D004782 ORTHO05D005498 1.3e-61 240.7 270 52.6
Gohir.A10G101700 Gossypium hirsutum HOM05D004782 ORTHO05D005498 2.9e-61 239.6 268 58.2
PSO017G6962 Papaver somniferum HOM05D004782 ORTHO05D005498 3.7e-61 239.2 275 56.0
vmacro18299 Vaccinium macrocarpon HOM05D004782 ORTHO05D005498 3.7e-61 239.2 285 53.3
SGA_v2.0_scaffold135G34920 Striga asiatica HOM05D004782 ORTHO05D005498 8.3e-61 238.0 268 51.1
MSTRG.3133 Avicennia marina HOM05D004782 ORTHO05D005498 1.1e-60 237.7 274 52.2
SGA_v2.0_scaffold18G08270 Striga asiatica HOM05D001715 ORTHO05D004824 2.4e-60 236.5 268 48.5
PGR142G1749 Punica granatum HOM05D004782 ORTHO05D005498 2.1e-59 233.4 234 61.1
PSO478G2740 Papaver somniferum HOM05D004782 ORTHO05D005498 2.7e-59 233.0 270 55.9
THA.LOC104802393 Tarenaya hassleriana HOM05D004782 ORTHO05D005498 4.6e-59 232.3 232 61.6
ECA238G0280 Erigeron canadensis HOM05D004782 ORTHO05D005498 1.7e-58 230.3 277 59.6
BcaB01g06372 Brassica carinata HOM05D004782 ORTHO05D005498 2.3e-58 229.9 220 60.0
Peaxi162Scf00420g00132 Petunia axillaris HOM05D004782 ORTHO05D005498 3.0e-58 229.6 270 56.7
Sed0010446 Sechium edule HOM05D004782 ORTHO05D005498 3.0e-58 229.6 218 61.9
CiPaw.04G029900 Carya illinoinensis HOM05D004782 ORTHO05D005498 3.9e-58 229.2 207 60.9
Glyma.16G018100 Glycine max HOM05D004782 ORTHO05D005498 6.6e-58 228.4 292 46.6
HanXRQChr14g0451131 Helianthus annuus HOM05D004782 ORTHO05D005498 6.6e-58 228.4 268 53.7
SalBow1G0524 Salvia bowleyana HOM05D004782 ORTHO05D005498 2.5e-57 226.5 272 53.3
Sp6g29580 Schrenkiella parvula HOM05D004782 ORTHO05D005498 2.5e-57 226.5 228 59.6
unitig_62.g23373 Utricularia gibba HOM05D004782 ORTHO05D005498 2.5e-57 226.5 266 53.0
AL6G25170 Arabidopsis lyrata HOM05D004782 ORTHO05D005498 5.6e-57 225.3 223 59.6
Aa31LG11G15220 Aethionema arabicum HOM05D004782 ORTHO05D005498 1.2e-56 224.2 223 61.9
A03p06620 Brassica napus HOM05D004782 ORTHO05D005498 1.2e-56 224.2 206 64.1
BraA03t09994Z Brassica rapa HOM05D004782 ORTHO05D005498 1.2e-56 224.2 206 64.1
PSO339G5508 Papaver somniferum HOM05D004782 ORTHO05D005498 1.6e-56 223.8 270 52.2
Sopen02g038150 Solanum pennellii HOM05D004782 ORTHO05D005498 4.7e-56 222.2 266 50.8
Solyc02g093510.3 Solanum lycopersicum HOM05D004782 ORTHO05D005498 8.1e-56 221.5 268 50.0
BraA02t05220Z Brassica rapa HOM05D004782 ORTHO05D005498 1.4e-55 220.7 216 59.3
CARHR198870 Cardamine hirsuta HOM05D004782 ORTHO05D005498 1.8e-55 220.3 231 58.4
C02p06750 Brassica napus HOM05D004782 ORTHO05D005498 2.3e-55 219.9 231 58.0
AT5G14440 Arabidopsis thaliana HOM05D004782 ORTHO05D005498 5.2e-55 218.8 267 55.8
C03p07650 Brassica napus HOM05D004782 ORTHO05D005498 6.8e-55 218.4 220 60.9
BcaNung03155 Brassica carinata HOM05D004782 ORTHO05D005498 8.9e-55 218.0 228 59.6
ATR0122G021 Amborella trichopoda HOM05D004782 ORTHO05D005498 1.2e-54 217.6 266 53.0
BolC3t13265H Brassica oleracea HOM05D004782 ORTHO05D005498 3.4e-54 216.1 219 59.8
Carub.0006s1262 Capsella rubella HOM05D004782 ORTHO05D005498 3.4e-54 216.1 230 58.7
Thhalv10014310m.g Eutrema salsugineum HOM05D004782 ORTHO05D005498 4.4e-54 215.7 216 57.9
Lsat_1_v5_gn_2_91141 Lactuca sativa HOM05D004782 ORTHO05D005498 4.4e-54 215.7 229 59.0
BcaC03g13490 Brassica carinata HOM05D004782 ORTHO05D005498 7.5e-54 214.9 228 58.3
MBI06_g10164_MAGBIO Magnolia biondii HOM05D004782 ORTHO05D005498 1.3e-53 214.2 291 44.3
BolC2t06621H Brassica oleracea HOM05D004782 ORTHO05D005498 1.7e-53 213.8 233 57.5
A02p02500 Brassica napus HOM05D004782 ORTHO05D005498 4.9e-53 212.2 224 58.0
DCAR_011265 Daucus carota HOM05D004782 ORTHO05D005498 9.2e-52 208.0 273 51.6
CDE09G1218 Ceratophyllum demersum HOM05D004782 ORTHO05D005498 6.6e-50 201.8 267 44.6
SEGI_27694 Sequoiadendron giganteum HOM05D004782 ORTHO05D005498 2.5e-49 199.9 269 41.6
GSVIVG01032375001 Vitis vinifera HOM05D004782 ORTHO05D005498 1.2e-48 197.6 236 53.8
CDE02G1226 Ceratophyllum demersum HOM05D004782 ORTHO05D005498 4.7e-48 195.7 264 42.8
Os04g0480400 Oryza sativa ssp. japonica HOM05D004782 ORTHO05D005498 4.0e-47 192.6 276 44.6
Aa31LG9G1060 Aethionema arabicum HOM05D004782 ORTHO05D005498 3.4e-46 189.5 268 44.8
Nitab4.5_0001562g0090 Nicotiana tabacum HOM05D004782 ORTHO05D005498 3.4e-46 189.5 245 53.9
AT5G40570 Arabidopsis thaliana HOM05D004782 ORTHO05D005498 4.4e-46 189.1 267 44.9
THA.LOC104805360 Tarenaya hassleriana HOM05D004782 ORTHO05D005498 5.8e-46 188.7 266 44.0
PGSC0003DMG400012612 Solanum tuberosum HOM05D004782 ORTHO05D005498 1.7e-45 187.2 249 45.4
PGR083G1527 Punica granatum HOM05D004782 ORTHO05D005498 1.4e-44 184.1 265 43.0
BcaB02g07942 Brassica carinata HOM05D004782 ORTHO05D005498 2.4e-44 183.3 266 44.0
CARHR261410 Cardamine hirsuta HOM05D004782 ORTHO05D005498 2.4e-44 183.3 267 43.4
BcaC03g13488 Brassica carinata HOM05D004782 ORTHO05D005498 5.4e-44 182.2 122 69.7
FAN09G1186 Fragaria x ananassa HOM05D004782 ORTHO05D005498 7.1e-44 181.8 101 80.2
Sp7g01290 Schrenkiella parvula HOM05D004782 ORTHO05D005498 7.1e-44 181.8 270 43.0
DCAR_021737 Daucus carota HOM05D004782 ORTHO05D005498 2.7e-43 179.9 266 44.7
Zm00001eb424970 Zea mays HOM05D004782 ORTHO05D005498 4.6e-43 179.1 268 40.3
BcaC03g13487 Brassica carinata HOM05D000631 ORTHO05D005498 1.0e-42 177.9 102 76.5
Hma1.2p1_1747F.1_g300620 Hydrangea macrophylla HOM05D004782 ORTHO05D005498 1.3e-42 177.6 123 68.3
BcaNung03158 Brassica carinata HOM05D004782 ORTHO05D005498 1.7e-42 177.2 220 46.8
Thhalv10027935m.g Eutrema salsugineum HOM05D004782 ORTHO05D005498 3.0e-42 176.4 276 43.1
Carub.0007s3495 Capsella rubella HOM05D004782 ORTHO05D005498 5.1e-42 175.6 266 41.7
Lju41A44T82 Lonicera japonica HOM05D004782 ORTHO05D005498 1.1e-41 174.5 214 47.2
AL7G49230 Arabidopsis lyrata HOM05D004782 ORTHO05D005498 2.5e-41 173.3 273 42.9
BcaC08g44464 Brassica carinata HOM05D004782 ORTHO05D005498 4.3e-41 172.6 267 42.7
BolC6t37113H Brassica oleracea HOM05D000001 ORTHO05D000003 8.1e-40 168.3 275 41.8
arahy.Tifrunner.gnm1.ann1.65GF4N Arachis hypogaea HOM05D004782 ORTHO05D005498 2.4e-39 166.8 272 44.1
arahy.Tifrunner.gnm1.ann1.6S1J49 Arachis hypogaea HOM05D004782 ORTHO05D005498 4.0e-39 166.0 272 43.8
Nitab4.5_0006683g0090 Nicotiana tabacum HOM05D004782 ORTHO05D005498 6.9e-39 165.2 258 47.3
Hma1.2p1_1563F.1_g290780 Hydrangea macrophylla HOM05D004782 ORTHO05D005498 4.4e-38 162.5 103 72.8
Actinidia33328 Actinidia chinensis HOM05D004782 ORTHO05D005498 1.6e-35 154.1 104 68.3
C08p04380 Brassica napus HOM05D004782 ORTHO05D005498 1.3e-32 144.4 127 53.5
BolC7t41458H Brassica oleracea HOM05D004782 ORTHO05D005498 2.8e-32 143.3 122 54.1
BcaC01g01740 Brassica carinata HOM05D004782 ORTHO05D005498 1.4e-31 141.0 101 61.4
BcaC01g01812 Brassica carinata HOM05D004782 ORTHO05D005498 1.4e-31 141.0 101 62.4
C09p40620 Brassica napus HOM05D004782 ORTHO05D005498 1.4e-31 141.0 101 63.4
BolC3t19536H Brassica oleracea HOM05D004782 ORTHO05D005498 1.4e-31 141.0 101 61.4
HPP92_008082 Vanilla planifolia HOM05D004782 ORTHO05D005498 4.9e-29 132.5 265 34.7
AagrBONN_evm.TU.Sc2ySwM_368.1010 Anthoceros agrestis HOM05D004782 ORTHO05D005498 3.2e-28 129.8 268 34.0
BcaC07g37075 Brassica carinata HOM05D004782 ORTHO05D005498 4.2e-28 129.4 90 63.3
BcaC04g20684 Brassica carinata HOM05D004782 ORTHO05D005498 9.3e-28 128.3 96 60.4
BolC8t47241H Brassica oleracea HOM05D004782 ORTHO05D005498 2.1e-27 127.1 105 56.2
BolC9t56944H Brassica oleracea HOM05D004782 ORTHO05D005498 2.1e-27 127.1 278 35.3
BcaC05g29299 Brassica carinata HOM05D004782 ORTHO05D014986 1.8e-26 124.0 97 58.8
C03p72400 Brassica napus HOM05D000186 ORTHO05D005498 3.0e-26 123.2 85 62.4
C05p55830 Brassica napus HOM05D004782 ORTHO05D005498 8.7e-26 121.7 86 62.8
Mapoly0013s0192 Marchantia polymorpha HOM05D004782 ORTHO05D005498 1.1e-25 121.3 239 38.5
C07p10120 Brassica napus HOM05D000186 ORTHO05D005498 3.3e-25 119.8 109 50.5
Sabra15G0083700 Salix brachista HOM05D004782 ORTHO05D005498 6.2e-24 115.5 103 60.2
Gohir.A04G046350 Gossypium hirsutum HOM05D004782 ORTHO05D005498 1.4e-23 114.4 80 67.5
BolC5t34251H Brassica oleracea HOM05D004782 ORTHO05D005498 1.2e-22 111.3 86 59.3
SMO119G0179 Selaginella moellendorffii HOM05D004782 ORTHO05D005498 5.8e-22 109.0 122 42.6
Lj7A601G104 Lonicera japonica HOM05D004782 ORTHO05D005498 3.4e-14 83.2 244 32.8
CBR_g2746 Chara braunii HOM05D001539 ORTHO05D000937 6.5e-13 79.0 113 39.8
CDE06G1742 Ceratophyllum demersum HOM05D004782 ORTHO05D005498 4.2e-12 76.3 107 42.1
Actinidia35780 Actinidia chinensis HOM05D004782 ORTHO05D005498 3.0e-10 70.1 50 68.0
Aqoxy3G01251 Aquilegia oxysepala HOM05D004782 ORTHO05D005498 1.9e-09 67.4 62 54.8
MD10G1172000 Malus domestica HOM05D004782 ORTHO05D005498 2.2e-08 63.9 94 46.8


User provided reference genes

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