Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G0376 Cannabis sativa HOM05D004124 ORTHO05D004779 4.7e-147 524.6 286 100.0
arahy.Tifrunner.gnm1.ann1.JS6392 Arachis hypogaea HOM05D004124 ORTHO05D004779 8.0e-131 470.7 285 89.1
Gorai.012G176300 Gossypium raimondii HOM05D004124 ORTHO05D004779 8.0e-131 470.7 285 89.5
Potri.001G056000 Populus trichocarpa HOM05D004124 ORTHO05D004779 8.0e-131 470.7 285 90.2
Duzib251G0523 Durio zibethinus HOM05D004124 ORTHO05D004779 1.4e-130 469.9 286 89.9
Haze_12426 Corylus avellana HOM05D004124 ORTHO05D004779 2.3e-130 469.2 285 90.5
Manes.12G010400 Manihot esculenta HOM05D004124 ORTHO05D004779 5.2e-130 468.0 286 89.5
GSVIVG01010495001 Vitis vinifera HOM05D004124 ORTHO05D004779 1.2e-129 466.8 285 90.5
Gohir.A04G140100 Gossypium hirsutum HOM05D004124 ORTHO05D004779 1.5e-129 466.5 286 88.5
RcHm_v2.0_Chr4g0430131 Rosa chinensis HOM05D004124 ORTHO05D004779 1.3e-128 463.4 286 88.5
Gohir.D04G183300 Gossypium hirsutum HOM05D004124 ORTHO05D004779 1.7e-128 463.0 288 88.2
arahy.Tifrunner.gnm1.ann1.B7Q2TL Arachis hypogaea HOM05D004124 ORTHO05D004779 2.8e-128 462.2 296 85.8
Sabra01G0040400 Salix brachista HOM05D004124 ORTHO05D004779 1.4e-127 459.9 285 88.1
TWI18G0339 Tripterygium wilfordii HOM05D004124 ORTHO05D004779 1.8e-127 459.5 286 88.1
COL.COLO4_20412 Corchorus olitorius HOM05D004124 ORTHO05D004779 2.4e-127 459.1 285 88.1
FAN17G0270 Fragaria x ananassa HOM05D004124 ORTHO05D004779 4.1e-127 458.4 285 87.0
Dinv10949 Davidia involucrata HOM05D004124 ORTHO05D004779 9.2e-127 457.2 285 89.1
MELO3C011859.2 Cucumis melo HOM05D004124 ORTHO05D004779 1.6e-126 456.4 286 87.8
CsaV3_5G030210 Cucumis sativus L. HOM05D004124 ORTHO05D004779 1.6e-126 456.4 286 87.8
Eucgr.H04636 Eucalyptus grandis HOM05D004124 ORTHO05D004779 2.0e-126 456.1 286 86.7
FvH4_4g23660 Fragaria vesca HOM05D004124 ORTHO05D004779 2.0e-126 456.1 286 87.1
FAN07G1336 Fragaria x ananassa HOM05D004124 ORTHO05D004779 2.0e-126 456.1 285 86.7
FAN12G0357 Fragaria x ananassa HOM05D004124 ORTHO05D004779 2.7e-126 455.7 285 87.0
Potri.003G172500 Populus trichocarpa HOM05D004124 ORTHO05D004779 2.7e-126 455.7 286 87.8
Glyma.18G005700 Glycine max HOM05D004124 ORTHO05D004779 5.9e-126 454.5 286 86.7
QL03p052498 Quercus lobata HOM05D004124 ORTHO05D004779 5.9e-126 454.5 285 86.7
FAN22G1987 Fragaria x ananassa HOM05D004124 ORTHO05D004779 7.7e-126 454.1 285 87.0
PGR102G1761 Punica granatum HOM05D004124 ORTHO05D004779 7.7e-126 454.1 286 86.7
CiPaw.06G103200 Carya illinoinensis HOM05D004124 ORTHO05D004779 1.3e-125 453.4 286 88.1
Ciclev10033913m.g Citrus clementina HOM05D004124 ORTHO05D004779 6.6e-125 451.1 306 83.3
VMungo1383G0738 Vigna mungo HOM05D004124 ORTHO05D004779 6.6e-125 451.1 285 86.3
Gorai.005G166600 Gossypium raimondii HOM05D004124 ORTHO05D004779 1.1e-124 450.3 286 87.8
Phvul.001G262500 Phaseolus vulgaris HOM05D004124 ORTHO05D004779 1.9e-124 449.5 286 86.0
Glyma.11G251300 Glycine max HOM05D004124 ORTHO05D004779 2.5e-124 449.1 286 86.0
Ca_16453_v3 Cicer arietinum L. HOM05D004124 ORTHO05D004779 7.3e-124 447.6 286 85.3
Lj6g0002227 Lotus japonicus HOM05D004124 ORTHO05D004779 7.3e-124 447.6 285 86.0
Gohir.A03G125700 Gossypium hirsutum HOM05D004124 ORTHO05D004779 4.7e-123 444.9 287 86.8
Atru.chr11.2334 Acer truncatum HOM05D004124 ORTHO05D004779 8.0e-123 444.1 286 87.8
Cc11_g16980 Coffea canephora HOM05D004124 ORTHO05D004779 8.0e-123 444.1 285 84.9
Gohir.D02G148500 Gossypium hirsutum HOM05D004124 ORTHO05D004779 3.0e-122 442.2 289 86.9
MD16G1120200 Malus domestica HOM05D004124 ORTHO05D004779 3.0e-122 442.2 288 85.4
Prupe.1G225000 Prunus persica HOM05D004124 ORTHO05D004779 1.2e-121 440.3 287 86.4
Psat5g096680 Pisum sativum HOM05D004124 ORTHO05D004779 2.9e-120 435.6 286 83.2
Nn8g41237 Nelumbo nucifera HOM05D004124 ORTHO05D004779 4.6e-118 428.3 286 81.5
Duzib248G0967 Durio zibethinus HOM05D004124 ORTHO05D004779 3.0e-117 425.6 285 84.6
Lalb_Chr11g0075781 Lupinus albus HOM05D004124 ORTHO05D004779 3.9e-117 425.2 286 81.1
Nn5g26967 Nelumbo nucifera HOM05D004124 ORTHO05D004779 3.9e-117 425.2 285 83.5
Rhsim12G0025300 Rhododendron simsii HOM05D004124 ORTHO05D004779 3.9e-117 425.2 285 84.2
Medtr3g085190 Medicago truncatula HOM05D004124 ORTHO05D004779 1.1e-116 423.7 285 80.4
TAR626G1310 Trochodendron aralioides HOM05D004124 ORTHO05D004779 1.1e-116 423.7 286 81.5
Sabra03G0126200 Salix brachista HOM05D004124 ORTHO05D004779 3.3e-116 422.2 267 86.5
MBI13_g33572_MAGBIO Magnolia biondii HOM05D004124 ORTHO05D004779 8.0e-115 417.5 288 80.9
MSTRG.8009 Avicennia marina HOM05D004124 ORTHO05D004779 6.8e-114 414.5 286 80.8
TAR383G0859 Trochodendron aralioides HOM05D004124 ORTHO05D004779 1.5e-113 413.3 283 80.2
Sed0002251 Sechium edule HOM05D004124 ORTHO05D004779 1.7e-112 409.8 286 81.8
TPR.G17791 Trifolium pratense HOM05D004124 ORTHO05D004779 1.7e-112 409.8 287 79.8
AUR62005628 Chenopodium quinoa HOM05D004124 ORTHO05D004779 6.4e-112 407.9 289 80.6
EL10Ac6g13513 Beta vulgaris HOM05D004124 ORTHO05D004779 1.4e-111 406.8 289 80.6
Lalb_Chr13g0294351 Lupinus albus HOM05D004124 ORTHO05D004779 1.4e-111 406.8 286 79.0
MSTRG.500 Avicennia marina HOM05D004124 ORTHO05D004779 2.4e-111 406.0 241 78.8
Actinidia09646 Actinidia chinensis HOM05D004124 ORTHO05D004779 3.2e-111 405.6 231 83.1
Nitab4.5_0000861g0060 Nicotiana tabacum HOM05D004124 ORTHO05D004779 7.0e-111 404.4 285 79.6
AUR62028920 Chenopodium quinoa HOM05D004124 ORTHO05D004779 1.6e-110 403.3 289 80.3
PGSC0003DMG400034304 Solanum tuberosum HOM05D004124 ORTHO05D004779 3.0e-109 399.1 286 79.0
Sopen05g010890 Solanum pennellii HOM05D004124 ORTHO05D004779 5.0e-109 398.3 286 79.0
Actinidia30642 Actinidia chinensis HOM05D004124 ORTHO05D004779 1.1e-108 397.1 241 79.7
Lalb_Chr08g0230601 Lupinus albus HOM05D004124 ORTHO05D004779 1.1e-108 397.1 286 78.7
PSO063G2768 Papaver somniferum HOM05D004124 ORTHO05D004779 1.1e-108 397.1 246 79.7
Peaxi162Scf00128g01335 Petunia axillaris HOM05D004124 ORTHO05D004779 1.5e-108 396.7 285 78.6
DCAR_024098 Daucus carota HOM05D004124 ORTHO05D004779 1.9e-108 396.4 286 77.3
PSO170G5699 Papaver somniferum HOM05D004124 ORTHO05D004779 3.3e-108 395.6 246 79.3
Thecc.02G206600 Theobroma cacao HOM05D004124 ORTHO05D004779 3.3e-108 395.6 210 90.5
Aa31sc584G20 Aethionema arabicum HOM05D004124 ORTHO05D004779 5.6e-108 394.8 288 77.8
Thhalv10018870m.g Eutrema salsugineum HOM05D004124 ORTHO05D004779 7.3e-108 394.4 246 77.2
Lalb_Chr07g0187111 Lupinus albus HOM05D004124 ORTHO05D004779 2.1e-107 392.9 288 78.1
Solyc05g015500.4 Solanum lycopersicum HOM05D004124 ORTHO05D004779 2.1e-107 392.9 284 78.5
THA.LOC104807133 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 6.2e-107 391.3 289 76.8
Carub.0002s1361 Capsella rubella HOM05D004124 ORTHO05D004779 8.1e-107 391.0 244 76.2
CAN.G163.7 Capsicum annuum HOM05D004124 ORTHO05D004779 1.4e-106 390.2 285 78.6
Migut.K00950 Erythranthe guttata HOM05D004124 ORTHO05D004779 5.2e-106 388.3 286 77.3
THA.LOC104825500 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 1.2e-105 387.1 287 77.0
Actinidia08066 Actinidia chinensis HOM05D004124 ORTHO05D004779 2.0e-105 386.3 275 70.5
vmacro01057 Vaccinium macrocarpon HOM05D004124 ORTHO05D004779 2.6e-105 386.0 342 67.8
AL2G25860 Arabidopsis lyrata HOM05D004124 ORTHO05D004779 1.3e-104 383.6 245 75.5
Sp5g22270 Schrenkiella parvula HOM05D004124 ORTHO05D004779 1.3e-104 383.6 291 77.0
CARHR059820 Cardamine hirsuta HOM05D004124 ORTHO05D004779 3.7e-104 382.1 242 76.0
THA.LOC104807526 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 3.7e-104 382.1 288 73.3
AT1G67325 Arabidopsis thaliana HOM05D004124 ORTHO05D004779 1.4e-103 380.2 245 75.1
Hund06093 Selenicereus undatus HOM05D004124 ORTHO05D004779 1.9e-103 379.8 242 76.4
SGA_v2.0_scaffold391G50628 Striga asiatica HOM05D004124 ORTHO05D004779 3.2e-103 379.0 242 75.2
Manes.13G011200 Manihot esculenta HOM05D004124 ORTHO05D004779 1.6e-102 376.7 285 75.1
ATR0626G238 Amborella trichopoda HOM05D004124 ORTHO05D004779 7.8e-102 374.4 287 74.2
Hund25468 Selenicereus undatus HOM05D004124 ORTHO05D004779 7.8e-102 374.4 262 72.5
DCAR_026459 Daucus carota HOM05D004124 ORTHO05D004779 1.5e-100 370.2 223 76.7
Lj6A827G48 Lonicera japonica HOM05D004124 ORTHO05D004779 4.3e-100 368.6 210 83.3
ECA234G0541 Erigeron canadensis HOM05D004124 ORTHO05D004779 7.3e-100 367.9 234 73.5
Aqoxy7G02609 Aquilegia oxysepala HOM05D004124 ORTHO05D004779 1.1e-98 364.0 244 74.6
CiPaw.05G108900 Carya illinoinensis HOM05D004124 ORTHO05D004779 1.4e-98 363.6 243 85.2
ECA233G0726 Erigeron canadensis HOM05D004124 ORTHO05D004779 8.9e-98 360.9 286 74.5
BcaB03g15346 Brassica carinata HOM05D004124 ORTHO05D004779 2.6e-97 359.4 292 73.6
Lj3A1069T45 Lonicera japonica HOM05D004124 ORTHO05D004779 1.3e-96 357.1 221 76.5
Sed0008103 Sechium edule HOM05D004124 ORTHO05D004779 2.2e-96 356.3 286 73.8
HanXRQChr17g0569011 Helianthus annuus HOM05D004124 ORTHO05D004779 2.7e-94 349.4 239 71.1
Duzib268G1736 Durio zibethinus HOM05D004124 ORTHO05D004779 3.5e-94 349.0 231 87.0
Eucgr.B03499 Eucalyptus grandis HOM05D004124 ORTHO05D004779 5.1e-93 345.1 285 72.3
HanXRQChr12g0372641 Helianthus annuus HOM05D004124 ORTHO05D004779 6.6e-93 344.7 287 71.1
C06p38790 Brassica napus HOM05D004124 ORTHO05D004779 6.2e-91 338.2 294 70.7
BolC6t38971H Brassica oleracea HOM05D004124 ORTHO05D004779 5.2e-90 335.1 294 70.4
Sc04g0010190 Simmondsia chinensis HOM05D004124 ORTHO05D004779 1.5e-89 333.6 289 71.6
CSS0020706 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 2.0e-89 333.2 229 83.8
ClCG11G013590 Citrullus lanatus HOM05D004124 ORTHO05D004779 5.8e-89 331.6 285 71.6
C06p42940 Brassica napus HOM05D004124 ORTHO05D004779 9.9e-89 330.9 294 70.4
CSS0002767 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 3.8e-88 328.9 198 81.3
A07p33920 Brassica napus HOM05D000660 ORTHO05D000766 4.9e-88 328.6 250 68.4
A07p32620 Brassica napus HOM05D004124 ORTHO05D004779 6.4e-88 328.2 295 69.8
BraA07t30886Z Brassica rapa HOM05D004124 ORTHO05D004779 6.4e-88 328.2 297 69.7
HanXRQChr12g0361221 Helianthus annuus HOM05D004124 ORTHO05D004779 2.1e-86 323.2 240 67.9
BolC6t39143H Brassica oleracea HOM05D004124 ORTHO05D004779 2.7e-86 322.8 246 68.3
Lsat_1_v5_gn_4_400 Lactuca sativa HOM05D004124 ORTHO05D004779 3.5e-86 322.4 250 69.2
unitig_749.g13306 Utricularia gibba HOM05D004124 ORTHO05D004779 1.0e-85 320.9 241 66.8
BraA07t31018Z Brassica rapa HOM05D000660 ORTHO05D000766 2.3e-85 319.7 247 67.6
Ah.03g136110 Amaranthus hybridus HOM05D004124 ORTHO05D004779 4.8e-83 312.0 232 68.1
Oeu006524.1 Olea europaea HOM05D004124 ORTHO05D004779 4.4e-81 305.4 198 74.2
Zm00001eb174550 Zea mays HOM05D004124 ORTHO05D004779 1.9e-76 290.0 245 62.0
Nitab4.5_0003900g0010 Nicotiana tabacum HOM05D004124 ORTHO05D004779 4.3e-76 288.9 229 74.2
Oeu049141.1 Olea europaea HOM05D004124 ORTHO05D004779 9.6e-76 287.7 217 66.4
CDE04G3109 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 3.4e-73 279.3 239 62.8
Lsat_1_v5_gn_8_147801 Lactuca sativa HOM05D004124 ORTHO05D004779 1.9e-71 273.5 246 61.8
Zm00001eb035500 Zea mays HOM05D004124 ORTHO05D004779 1.6e-70 270.4 245 59.2
HPP92_015269 Vanilla planifolia HOM05D004124 ORTHO05D004779 1.3e-69 267.3 201 65.7
Os08g0521400 Oryza sativa ssp. japonica HOM05D004124 ORTHO05D004779 4.6e-62 242.3 247 55.1
Cpa.g.sc43.62 Carica papaya HOM05D004124 ORTHO05D004779 1.7e-48 197.2 201 52.2
Lsat_1_v5_gn_5_94821 Lactuca sativa HOM05D004124 ORTHO05D004779 9.4e-47 191.4 245 59.2
HanXRQChr08g0221261 Helianthus annuus HOM05D004124 ORTHO05D004779 1.8e-45 187.2 131 70.2
AagrBONN_evm.TU.Sc2ySwM_340.309 Anthoceros agrestis HOM05D004124 ORTHO05D004779 8.8e-37 158.3 251 40.2
Pp3c4_8110 Physcomitrium patens HOM05D004124 ORTHO05D004779 1.7e-35 154.1 245 43.3
SMO200G0023 Selaginella moellendorffii HOM05D004124 ORTHO05D004779 3.8e-32 142.9 239 38.1
Mapoly0005s0267 Marchantia polymorpha HOM05D004124 ORTHO05D004779 3.6e-30 136.3 253 36.0
PGR083G0898 Punica granatum HOM05D004124 ORTHO05D004779 8.0e-30 135.2 185 48.1
CiPaw.13G027200 Carya illinoinensis HOM05D002637 ORTHO05D008095 1.5e-28 131.0 229 40.2
arahy.Tifrunner.gnm1.ann1.FNBZ5S Arachis hypogaea HOM05D004124 ORTHO05D004779 5.7e-28 129.0 223 39.0
CiPaw.14G021000 Carya illinoinensis HOM05D004124 ORTHO05D004779 2.2e-27 127.1 222 37.8
TAR374G0532 Trochodendron aralioides HOM05D004124 ORTHO05D004779 4.1e-26 122.9 226 37.2
Glyma.18G252600 Glycine max HOM05D004124 ORTHO05D004779 9.1e-26 121.7 230 37.0
Nn1g00866 Nelumbo nucifera HOM05D004124 ORTHO05D004779 1.6e-25 120.9 236 38.1
PSO782G3756 Papaver somniferum HOM05D004124 ORTHO05D004779 1.6e-25 120.9 228 34.6
arahy.Tifrunner.gnm1.ann1.4H3LGZ Arachis hypogaea HOM05D004124 ORTHO05D004779 1.0e-24 118.2 235 36.6
Lj3g0004507 Lotus japonicus HOM05D004124 ORTHO05D004779 1.0e-24 118.2 233 38.2
Aqoxy3G02746 Aquilegia oxysepala HOM05D004124 ORTHO05D004779 1.7e-24 117.5 229 36.7
TAR375G0412 Trochodendron aralioides HOM05D004124 ORTHO05D004779 1.7e-24 117.5 234 37.6
Cfa011079 Carpinus fangiana HOM05D002637 ORTHO05D008095 8.5e-24 115.2 255 32.5
BcaNung07398 Brassica carinata HOM05D004124 ORTHO05D004779 9.4e-23 111.7 53 96.2
Phvul.008G046200 Phaseolus vulgaris HOM05D004124 ORTHO05D004779 9.4e-23 111.7 234 34.2
CDE06G1866 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 2.7e-22 110.2 245 33.1
Ca_14066_v3 Cicer arietinum L. HOM05D004124 ORTHO05D004779 6.1e-22 109.0 236 36.4
CBR_g53713 Chara braunii HOM05D004124 ORTHO05D004779 6.8e-21 105.5 256 34.4
CDE06G1514 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 7.5e-20 102.1 213 34.3
GSVIVG01018266001 Vitis vinifera HOM05D004124 ORTHO05D004779 3.7e-19 99.8 202 36.1
Eucgr.L03169 Eucalyptus grandis HOM05D004124 ORTHO05D004779 4.1e-18 96.3 103 52.4
PGR083G1960 Punica granatum HOM05D000500 ORTHO05D000367 1.7e-16 90.9 56 73.2
Zm00001eb105300 Zea mays HOM05D004124 ORTHO05D004779 2.2e-16 90.5 262 30.2
AagrBONN_evm.TU.Sc2ySwM_368.334 Anthoceros agrestis HOM05D004124 ORTHO05D004779 3.8e-16 89.7 201 33.3
HanXRQChr12g0379451 Helianthus annuus HOM05D004124 ORTHO05D004779 6.5e-16 89.0 55 70.9
Os07g0490600 Oryza sativa ssp. japonica HOM05D004124 ORTHO05D004779 6.5e-16 89.0 250 30.0
Glyma.09G242400 Glycine max HOM05D004124 ORTHO05D004779 5.5e-15 85.9 171 37.4
Actinidia20714 Actinidia chinensis HOM05D004124 ORTHO05D004779 7.2e-15 85.5 46 82.6
QL04p030567 Quercus lobata HOM05D004124 ORTHO05D004779 1.8e-13 80.9 168 35.1
Psat7g021520 Pisum sativum HOM05D004124 ORTHO05D004779 2.6e-12 77.0 257 26.5
CANSAT21G0875 Cannabis sativa HOM05D004124 ORTHO05D004779 1.3e-11 74.7 166 33.7
PSO063G6881 Papaver somniferum HOM05D004124 ORTHO05D004779 4.9e-11 72.8 168 33.3
QL04p030562 Quercus lobata HOM05D004124 ORTHO05D000004 1.6e-09 67.8 51 56.9
Haze_02835 Corylus avellana HOM05D004124 ORTHO05D004779 4.5e-09 66.2 48 58.3
ATR0057G076 Amborella trichopoda HOM05D004124 ORTHO05D004779 1.0e-08 65.1 51 52.9
SMO181G0003 Selaginella moellendorffii HOM05D004124 ORTHO05D004779 1.9e-07 60.8 37 64.9
VMungo1383G0643 Vigna mungo HOM05D004124 ORTHO05D004779 2.5e-07 60.5 144 31.9
Zm00001eb321720 Zea mays HOM05D004124 ORTHO05D004779 9.5e-07 58.5 58 44.8


User provided reference genes

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