Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G0270 Cannabis sativa HOM05D006144 ORTHO05D006357 0.0e+00 2610.1 1325 100.0
Haze_15426 Corylus avellana HOM05D006144 ORTHO05D006357 0.0e+00 1352.8 1350 55.3
Prupe.7G136200 Prunus persica HOM05D006144 ORTHO05D006357 0.0e+00 1350.1 1344 55.4
MD02G1169100 Malus domestica HOM05D006144 ORTHO05D006357 0.0e+00 1333.2 1347 54.3
Cfa003998 Carpinus fangiana HOM05D006144 ORTHO05D006357 0.0e+00 1332.8 1350 54.5
QL06p042250 Quercus lobata HOM05D006144 ORTHO05D006357 0.0e+00 1325.5 1353 55.1
MD15G1281500 Malus domestica HOM05D006144 ORTHO05D006357 0.0e+00 1323.5 1346 54.1
Atru.chr3.396 Acer truncatum HOM05D006144 ORTHO05D006357 0.0e+00 1298.9 1349 52.9
RcHm_v2.0_Chr2g0105021 Rosa chinensis HOM05D006144 ORTHO05D006357 0.0e+00 1291.2 1332 54.2
CiPaw.01G021400 Carya illinoinensis HOM05D006144 ORTHO05D006357 0.0e+00 1283.9 1337 53.7
FAN26G0177 Fragaria x ananassa HOM05D006144 ORTHO05D006357 0.0e+00 1265.8 1325 53.9
FAN19G3143 Fragaria x ananassa HOM05D006144 ORTHO05D006357 0.0e+00 1260.7 1327 54.0
FvH4_1g15710 Fragaria vesca HOM05D006144 ORTHO05D006357 0.0e+00 1256.9 1327 54.0
FAN23G0857 Fragaria x ananassa HOM05D006144 ORTHO05D006357 0.0e+00 1253.8 1326 53.2
CSS0009151 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 0.0e+00 1251.9 1319 53.9
Gohir.A11G046100 Gossypium hirsutum HOM05D006144 ORTHO05D006357 0.0e+00 1251.1 1330 52.1
Gorai.007G053500 Gossypium raimondii HOM05D006144 ORTHO05D006357 0.0e+00 1251.1 1340 51.9
Duzib147G1467 Durio zibethinus HOM05D006144 ORTHO05D006357 0.0e+00 1250.7 1349 52.3
FAN28G0789 Fragaria x ananassa HOM05D006144 ORTHO05D006357 0.0e+00 1248.4 1307 53.9
CSS0011451 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 0.0e+00 1247.3 1319 53.8
Gohir.D11G049700 Gossypium hirsutum HOM05D006144 ORTHO05D006357 0.0e+00 1246.9 1330 51.9
Potri.007G041300 Populus trichocarpa HOM05D006144 ORTHO05D006357 0.0e+00 1246.9 1364 51.7
Thecc.01G052700 Theobroma cacao HOM05D006144 ORTHO05D006357 0.0e+00 1225.7 1333 51.6
COL.COLO4_22183 Corchorus olitorius HOM05D006144 ORTHO05D006357 0.0e+00 1216.4 1321 51.0
Potri.005G136600 Populus trichocarpa HOM05D006144 ORTHO05D006357 0.0e+00 1208.7 1344 50.1
Ciclev10024721m.g Citrus clementina HOM05D006144 ORTHO05D006357 0.0e+00 1178.7 1317 50.0
Actinidia36503 Actinidia chinensis HOM05D006144 ORTHO05D006357 0.0e+00 1177.2 1332 50.5
Actinidia12060 Actinidia chinensis HOM05D006144 ORTHO05D006357 0.0e+00 1162.5 1325 50.1
Manes.12G100500 Manihot esculenta HOM05D006144 ORTHO05D006357 0.0e+00 1145.2 1334 48.5
Hma1.2p1_0200F.1_g086100 Hydrangea macrophylla HOM05D006144 ORTHO05D006357 0.0e+00 1117.1 1339 48.4
Sabra07G0036900 Salix brachista HOM05D006144 ORTHO05D006357 0.0e+00 1114.8 1260 50.2
TWI09G0039 Tripterygium wilfordii HOM05D006144 ORTHO05D006357 0.0e+00 1111.3 1348 47.0
Rhsim10G0119800 Rhododendron simsii HOM05D006144 ORTHO05D006357 0.0e+00 1075.5 1315 47.4
Nn5g30196 Nelumbo nucifera HOM05D006144 ORTHO05D006357 0.0e+00 1075.1 1323 47.9
Dinv39873 Davidia involucrata HOM05D006144 ORTHO05D006357 1.8e-310 1069.7 1338 47.7
CSS0044544 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 1.2e-309 1067.0 1265 48.9
vmacro05326 Vaccinium macrocarpon HOM05D006144 ORTHO05D006357 5.4e-307 1058.1 1477 43.2
CsaV3_6G043130 Cucumis sativus L. HOM05D006144 ORTHO05D006357 2.3e-305 1052.7 1329 46.9
Dinv29969 Davidia involucrata HOM05D006144 ORTHO05D006357 3.9e-305 1052.0 1195 50.0
Nn1g05861 Nelumbo nucifera HOM05D006144 ORTHO05D006357 2.5e-304 1049.3 1354 46.0
Glyma.11G057500 Glycine max HOM05D006144 ORTHO05D006357 1.4e-302 1043.5 1298 45.8
Glyma.01G184700 Glycine max HOM05D006144 ORTHO05D006357 8.4e-300 1034.2 1297 45.6
Lj2g0024358 Lotus japonicus HOM05D006144 ORTHO05D006357 4.2e-299 1031.9 1313 45.2
arahy.Tifrunner.gnm1.ann1.IY5EPV Arachis hypogaea HOM05D006144 ORTHO05D006357 1.0e-297 1027.3 1299 45.8
ClCG01G016710 Citrullus lanatus HOM05D006144 ORTHO05D006357 3.9e-297 1025.4 1343 46.3
arahy.Tifrunner.gnm1.ann1.AH11HU Arachis hypogaea HOM05D006144 ORTHO05D006357 5.1e-297 1025.0 1299 45.3
Cc07_g05860 Coffea canephora HOM05D006144 ORTHO05D006357 1.1e-294 1017.3 1330 45.3
Sed0018548 Sechium edule HOM05D006144 ORTHO05D006357 1.7e-292 1010.0 1300 46.5
Eucgr.H01999 Eucalyptus grandis HOM05D006144 ORTHO05D006357 3.9e-289 998.8 1338 44.7
MELO3C007550.2 Cucumis melo HOM05D006144 ORTHO05D006357 6.7e-289 998.0 1210 48.1
Phvul.002G020300 Phaseolus vulgaris HOM05D006144 ORTHO05D006357 1.1e-288 997.3 1320 44.2
Lalb_Chr16g0388301 Lupinus albus HOM05D006144 ORTHO05D006357 2.9e-284 982.6 1316 43.1
VMungo1215G0092 Vigna mungo HOM05D006144 ORTHO05D006357 2.9e-284 982.6 1319 44.3
PGSC0003DMG400019754 Solanum tuberosum HOM05D006144 ORTHO05D006357 4.2e-283 978.8 1307 43.4
TPR.G31101 Trifolium pratense HOM05D006144 ORTHO05D006357 5.5e-283 978.4 1306 43.5
Nitab4.5_0000382g0030 Nicotiana tabacum HOM05D006144 ORTHO05D006357 1.2e-282 977.2 1322 43.3
Ca_24781_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 1.0e-281 974.2 1308 43.5
Nitab4.5_0001684g0030 Nicotiana tabacum HOM05D006144 ORTHO05D006357 3.9e-281 972.2 1322 43.2
Solyc03g044620.4 Solanum lycopersicum HOM05D006144 ORTHO05D006357 9.7e-280 967.6 1330 43.1
Peaxi162Scf00183g00711 Petunia axillaris HOM05D006144 ORTHO05D006357 1.7e-276 956.8 1330 42.5
Oeu003786.1 Olea europaea HOM05D006144 ORTHO05D006357 4.2e-275 952.2 1235 45.8
Psat0s3889g0080 Pisum sativum HOM05D006144 ORTHO05D006357 4.2e-275 952.2 1299 42.8
Oeu049306.1 Olea europaea HOM05D006144 ORTHO05D006357 1.6e-274 950.3 1277 44.4
CAN.G11.1 Capsicum annuum HOM05D006144 ORTHO05D006357 2.1e-274 949.9 1326 42.5
Sopen03g008900 Solanum pennellii HOM05D006144 ORTHO05D006357 1.0e-273 947.6 1337 42.2
Lalb_Chr09g0333701 Lupinus albus HOM05D006144 ORTHO05D006357 5.1e-273 945.3 1304 42.9
PGR102G0121 Punica granatum HOM05D006144 ORTHO05D006357 1.4e-270 937.2 1243 45.5
DCAR_025720 Daucus carota HOM05D006144 ORTHO05D006357 2.5e-267 926.4 1347 42.5
Aqoxy6G01406 Aquilegia oxysepala HOM05D006144 ORTHO05D006357 5.5e-267 925.2 1327 42.7
Migut.H00451 Erythranthe guttata HOM05D006144 ORTHO05D006357 5.9e-261 905.2 1289 43.0
MBI06_g08189_MAGBIO Magnolia biondii HOM05D006144 ORTHO05D006357 9.1e-254 881.3 1324 42.4
MSTRG.2895 Avicennia marina HOM05D006144 ORTHO05D006357 1.3e-252 877.5 1334 41.0
Hund13563 Selenicereus undatus HOM05D006144 ORTHO05D006357 1.3e-247 860.9 1303 42.0
THA.LOC104826201 Tarenaya hassleriana HOM05D006144 ORTHO05D006357 4.1e-246 855.9 1339 39.6
EL10Ac6g15152 Beta vulgaris HOM05D006144 ORTHO05D006357 2.1e-226 790.4 1302 39.6
Oeu004869.1 Olea europaea HOM05D006144 ORTHO05D006357 2.3e-225 786.9 1334 39.1
SGA_v2.0_scaffold204G41590 Striga asiatica HOM05D006144 ORTHO05D006357 3.2e-222 776.5 1313 39.2
Sc03g0001430 Simmondsia chinensis HOM05D006144 ORTHO05D006357 1.5e-216 757.7 1330 38.4
ATR0104G015 Amborella trichopoda HOM05D006144 ORTHO05D006357 1.2e-210 738.0 1340 37.8
THA.LOC104804508 Tarenaya hassleriana HOM05D006144 ORTHO05D006357 3.6e-210 736.5 1083 41.1
AUR62003855 Chenopodium quinoa HOM05D006144 ORTHO05D006357 2.9e-207 726.9 1315 38.3
HPP92_004081 Vanilla planifolia HOM05D006144 ORTHO05D006357 1.5e-200 704.5 1308 37.2
AUR62001952 Chenopodium quinoa HOM05D006144 ORTHO05D006357 2.3e-196 690.6 1230 38.9
HanXRQChr14g0430551 Helianthus annuus HOM05D006144 ORTHO05D006357 2.8e-194 683.7 954 41.4
Ah.03g144510 Amaranthus hybridus HOM05D006144 ORTHO05D006357 2.0e-192 677.6 1308 35.2
GSVIVG01002633001 Vitis vinifera HOM05D006144 ORTHO05D006357 6.4e-191 672.5 698 55.4
ECA232G0891 Erigeron canadensis HOM05D006144 ORTHO05D006357 1.0e-188 665.2 1250 37.0
TAR381G1042 Trochodendron aralioides HOM05D006144 ORTHO05D006357 3.9e-188 663.3 703 54.1
Os03g0186500 Oryza sativa ssp. japonica HOM05D006144 ORTHO05D006357 1.8e-185 654.4 1158 37.6
Zm00001eb006470 Zea mays HOM05D006144 ORTHO05D006357 1.6e-173 614.8 1262 34.4
CDE03G0440 Ceratophyllum demersum HOM05D006144 ORTHO05D006357 6.0e-173 612.8 1256 35.6
Lsat_1_v5_gn_4_167780 Lactuca sativa HOM05D006144 ORTHO05D006357 1.2e-165 588.6 1107 35.7
Lj4C140T7 Lonicera japonica HOM05D006144 ORTHO05D006357 1.8e-164 584.7 693 50.5
Lj4A140T30 Lonicera japonica HOM05D006144 ORTHO05D006357 3.4e-160 570.5 612 48.9
Cpa.g.sc55.182 Carica papaya HOM05D006144 ORTHO05D006357 1.7e-159 568.2 718 48.9
Cpa.g.sc55.178 Carica papaya HOM05D006144 ORTHO05D006357 1.4e-150 538.5 606 47.7
TAR381G0606 Trochodendron aralioides HOM05D006144 ORTHO05D006357 7.4e-147 526.2 568 50.0
PSO675G0817 Papaver somniferum HOM05D006144 ORTHO05D006357 2.6e-139 501.1 727 44.3
Ca_22186_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 2.9e-135 487.6 790 40.0
Psat4g089200 Pisum sativum HOM05D006144 ORTHO05D006357 5.9e-128 463.4 821 38.1
PSO541G4136 Papaver somniferum HOM05D006144 ORTHO05D006357 9.1e-121 439.5 717 42.7
HPP92_004109 Vanilla planifolia HOM05D006144 ORTHO05D006357 1.3e-111 409.1 765 34.1
TPR.G640 Trifolium pratense HOM05D006144 ORTHO05D006357 2.4e-97 361.7 348 53.4
MSTRG.23764 Avicennia marina HOM05D006144 ORTHO05D006357 2.7e-96 358.2 686 38.5
Mapoly0063s0038 Marchantia polymorpha HOM05D006144 ORTHO05D006357 1.2e-93 349.4 822 31.0
unitig_736.g22372 Utricularia gibba HOM05D006144 ORTHO05D006357 6.2e-93 347.1 689 36.4
Hma1.2p1_1415F.1_g282000 Hydrangea macrophylla HOM05D006144 ORTHO05D006357 6.2e-85 320.5 663 35.6
Mapoly0063s0034 Marchantia polymorpha HOM05D006144 ORTHO05D006357 4.0e-84 317.8 808 30.3
SEGI_17223 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 2.6e-75 288.5 903 30.1
SEGI_14166 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 5.8e-67 260.8 595 31.6
SMO301G0037 Selaginella moellendorffii HOM05D006144 ORTHO05D006357 1.4e-60 239.6 1135 24.9
AUR62039591 Chenopodium quinoa HOM05D006144 ORTHO05D006357 5.9e-43 181.0 293 36.9
Aa31LG1G15380 Aethionema arabicum HOM05D012861 ORTHO05D006357 2.9e-42 178.7 566 32.9
AUR62013383 Chenopodium quinoa HOM05D006144 ORTHO05D006017 3.6e-40 171.8 225 42.2
unitig_736.g22373 Utricularia gibba HOM05D006144 ORTHO05D006357 1.2e-32 146.7 264 32.2
AT5G66820 Arabidopsis thaliana HOM05D012861 ORTHO05D006357 3.0e-31 142.1 562 29.5
Dinv29968 Davidia involucrata HOM05D000370 ORTHO05D001366 7.2e-25 120.9 113 52.2
unitig_736.g22374 Utricularia gibba HOM05D006144 ORTHO05D006357 2.7e-24 119.0 236 31.8
Pp3c4_25960 Physcomitrium patens HOM05D006144 ORTHO05D006357 9.7e-22 110.5 377 24.7
BcaC06g34756 Brassica carinata HOM05D012861 ORTHO05D006357 7.0e-20 104.4 568 26.8
BolC7t43021H Brassica oleracea HOM05D012861 ORTHO05D006357 1.2e-19 103.6 568 26.8
C07p24920 Brassica napus HOM05D012861 ORTHO05D006357 1.7e-18 99.8 567 25.9
Ca_06605_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 1.7e-18 99.8 316 32.9
Ca_06861_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 2.2e-18 99.4 316 32.9
Sp2g29830 Schrenkiella parvula HOM05D012861 ORTHO05D006357 2.2e-18 99.4 601 26.3
AL8G44580 Arabidopsis lyrata HOM05D012861 ORTHO05D006357 2.9e-18 99.0 578 27.0
Carub.0008s2766 Capsella rubella HOM05D012861 ORTHO05D006357 3.2e-17 95.5 484 27.1
Pp3c26_5160 Physcomitrium patens HOM05D006144 ORTHO05D006357 5.5e-17 94.7 372 24.2
A07p17060 Brassica napus HOM05D012861 ORTHO05D006357 1.6e-16 93.2 542 26.9
BraA07t29433Z Brassica rapa HOM05D012861 ORTHO05D006357 1.6e-16 93.2 542 26.9
CBR_g31222 Chara braunii HOM05D006144 ORTHO05D006357 1.4e-15 90.1 291 26.5
Thhalv10004001m.g Eutrema salsugineum HOM05D012861 ORTHO05D006357 2.3e-15 89.4 549 24.2
BcaB02g09983 Brassica carinata HOM05D012861 ORTHO05D006357 3.4e-14 85.5 213 32.9
AagrBONN_evm.TU.Sc2ySwM_228.442 Anthoceros agrestis HOM05D006144 ORTHO05D006357 4.4e-14 85.1 303 23.8
CARHR280840 Cardamine hirsuta HOM05D012861 ORTHO05D006357 9.8e-14 84.0 555 22.3
Sabra05G0109200 Salix brachista HOM05D006144 ORTHO05D006357 2.8e-13 82.4 194 35.6
Sabra05G0109100 Salix brachista HOM05D006144 ORTHO05D006357 3.1e-12 79.0 164 32.9
Sc11g0005350 Simmondsia chinensis HOM05D006144 ORTHO05D006357 4.1e-12 78.6 134 38.8
MCO09G582 Micromonas commoda HOM05D006144 ORTHO05D006357 7.2e-09 67.8 313 21.7
GSVIVG01002722001 Vitis vinifera HOM05D006144 ORTHO05D006357 1.8e-07 63.2 97 36.1
Medtr8g079870 Medicago truncatula HOM05D006144 ORTHO05D006357 4.0e-07 62.0 99 37.4
TPR.G19009 Trifolium pratense HOM05D006144 ORTHO05D006357 1.2e-06 60.5 132 29.5
SEGI_01818 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 7.5e-06 57.8 90 40.0


User provided reference genes

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