Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G0240 Cannabis sativa HOM05D007261 ORTHO05D009163 1.5e-127 459.5 240 100.0
Ciclev10029098m.g Citrus clementina HOM05D007261 ORTHO05D009163 2.1e-92 342.8 237 71.7
Potri.001G070800 Populus trichocarpa HOM05D007261 ORTHO05D009163 2.1e-92 342.8 237 71.7
PGR119G1620 Punica granatum HOM05D007261 ORTHO05D009163 4.7e-92 341.7 239 72.0
Cpa.g.sc38.54 Carica papaya HOM05D007261 ORTHO05D009163 1.8e-91 339.7 232 70.7
FAN07G0598 Fragaria x ananassa HOM05D007261 ORTHO05D009163 2.3e-91 339.3 225 74.7
Atru.chr12.1480 Acer truncatum HOM05D007261 ORTHO05D009163 3.0e-91 339.0 240 70.4
FAN12G3746 Fragaria x ananassa HOM05D007261 ORTHO05D009163 5.2e-91 338.2 243 70.4
Manes.09G172600 Manihot esculenta HOM05D007261 ORTHO05D009163 5.2e-91 338.2 236 69.1
FAN17G2458 Fragaria x ananassa HOM05D007261 ORTHO05D009163 8.9e-91 337.4 223 74.4
FvH4_4g22120 Fragaria vesca HOM05D007261 ORTHO05D009163 2.0e-90 336.3 239 70.7
Sabra01G0049700 Salix brachista HOM05D007261 ORTHO05D009163 2.6e-90 335.9 237 69.2
RcHm_v2.0_Chr4g0428371 Rosa chinensis HOM05D007261 ORTHO05D009163 3.4e-90 335.5 223 73.5
Prupe.1G211100 Prunus persica HOM05D007261 ORTHO05D009163 7.5e-90 334.3 223 75.8
MD16G1145000 Malus domestica HOM05D007261 ORTHO05D009163 2.9e-89 332.4 252 69.8
TWI18G1332 Tripterygium wilfordii HOM05D007261 ORTHO05D009163 6.4e-89 331.3 232 71.1
MD13G1134400 Malus domestica HOM05D007261 ORTHO05D009163 3.2e-88 328.9 252 68.7
Peaxi162Scf01167g00120 Petunia axillaris HOM05D007261 ORTHO05D009163 9.2e-88 327.4 230 70.9
Hma1.2p1_0738F.1_g210990 Hydrangea macrophylla HOM05D007261 ORTHO05D009163 2.0e-87 326.2 237 70.5
Dinv04437 Davidia involucrata HOM05D007261 ORTHO05D009163 2.7e-87 325.9 233 70.4
MELO3C026753.2 Cucumis melo HOM05D007261 ORTHO05D009163 3.5e-87 325.5 236 69.1
Cfa009475 Carpinus fangiana HOM05D007261 ORTHO05D009163 7.8e-87 324.3 226 71.7
CsaV3_3G043490 Cucumis sativus L. HOM05D007261 ORTHO05D009163 1.0e-86 323.9 239 68.6
Thecc.01G239300 Theobroma cacao HOM05D007261 ORTHO05D009163 1.3e-86 323.6 236 69.1
Sed0025955 Sechium edule HOM05D007261 ORTHO05D009163 2.3e-86 322.8 232 69.8
QL03p048277 Quercus lobata HOM05D007261 ORTHO05D009163 8.6e-86 320.9 222 70.7
Eucgr.J01661 Eucalyptus grandis HOM05D007261 ORTHO05D009163 1.9e-85 319.7 238 68.1
TWI36G0866 Tripterygium wilfordii HOM05D007261 ORTHO05D009163 7.3e-85 317.8 232 69.8
ClCG10G013090 Citrullus lanatus HOM05D007261 ORTHO05D009163 1.2e-84 317.0 241 67.6
PSO017G6922 Papaver somniferum HOM05D007261 ORTHO05D009163 2.1e-84 316.2 227 69.6
arahy.Tifrunner.gnm1.ann1.EWZS38 Arachis hypogaea HOM05D007261 ORTHO05D009163 4.7e-84 315.1 225 68.4
arahy.Tifrunner.gnm1.ann1.X3R9N8 Arachis hypogaea HOM05D007261 ORTHO05D009163 4.7e-84 315.1 225 68.4
PSO478G2703 Papaver somniferum HOM05D007261 ORTHO05D009163 4.7e-84 315.1 227 69.2
Duzib264G0686 Durio zibethinus HOM05D007261 ORTHO05D009163 1.0e-83 313.9 234 67.5
AUR62003485 Chenopodium quinoa HOM05D007261 ORTHO05D009163 1.4e-83 313.5 237 66.7
Nitab4.5_0005286g0010 Nicotiana tabacum HOM05D007261 ORTHO05D009163 1.8e-83 313.2 226 69.9
Nn4g22065 Nelumbo nucifera HOM05D007261 ORTHO05D009163 2.3e-83 312.8 239 67.8
Aa31LG7G10040 Aethionema arabicum HOM05D007261 ORTHO05D009163 4.0e-83 312.0 231 66.7
Gorai.007G068700 Gossypium raimondii HOM05D007261 ORTHO05D009163 4.0e-83 312.0 235 66.4
Gohir.A11G059400 Gossypium hirsutum HOM05D007261 ORTHO05D009163 5.2e-83 311.6 235 66.4
Lj1g0023925 Lotus japonicus HOM05D007261 ORTHO05D009163 8.9e-83 310.8 234 67.9
PGSC0003DMG400002189 Solanum tuberosum HOM05D007261 ORTHO05D009163 8.9e-83 310.8 228 69.3
GSVIVG01001121001 Vitis vinifera HOM05D007261 ORTHO05D009163 8.9e-83 310.8 215 73.0
Aqoxy5G04229 Aquilegia oxysepala HOM05D007261 ORTHO05D009163 1.2e-82 310.5 232 65.9
Gohir.D11G063500 Gossypium hirsutum HOM05D007261 ORTHO05D009163 3.4e-82 308.9 235 66.0
Lalb_Chr04g0257321 Lupinus albus HOM05D007261 ORTHO05D009163 3.4e-82 308.9 235 64.3
CSS0010700 Camellia sinensis var. sinensis HOM05D007261 ORTHO05D009163 7.5e-82 307.8 236 68.2
CSS0041929 Camellia sinensis var. sinensis HOM05D007261 ORTHO05D009163 9.8e-82 307.4 236 68.2
Rhsim12G0015700 Rhododendron simsii HOM05D007261 ORTHO05D009163 9.8e-82 307.4 223 70.9
Cc11_g14850 Coffea canephora HOM05D007261 ORTHO05D009163 1.7e-81 306.6 244 64.8
AUR62017794 Chenopodium quinoa HOM05D007261 ORTHO05D009163 2.2e-81 306.2 237 65.4
Hund12712 Selenicereus undatus HOM05D007261 ORTHO05D009163 2.2e-81 306.2 235 67.2
Solyc11g040130.2 Solanum lycopersicum HOM05D007261 ORTHO05D009163 2.9e-81 305.8 239 65.7
vmacro01006 Vaccinium macrocarpon HOM05D007261 ORTHO05D009163 2.9e-81 305.8 222 70.3
Sopen11g017340 Solanum pennellii HOM05D007261 ORTHO05D009163 3.7e-81 305.4 228 67.5
CAN.G624.13 Capsicum annuum HOM05D007261 ORTHO05D009163 1.9e-80 303.1 244 64.3
AL1G52610 Arabidopsis lyrata HOM05D007261 ORTHO05D009163 2.4e-80 302.8 233 65.7
CARHR036160 Cardamine hirsuta HOM05D007261 ORTHO05D009163 2.4e-80 302.8 233 64.4
TAR629G2200 Trochodendron aralioides HOM05D007261 ORTHO05D009163 2.4e-80 302.8 237 65.4
AT1G44960 Arabidopsis thaliana HOM05D007261 ORTHO05D009163 4.1e-80 302.0 233 65.2
Carub.0001s3543 Capsella rubella HOM05D007261 ORTHO05D009163 5.4e-80 301.6 244 63.5
EL10Ac6g15388 Beta vulgaris HOM05D007261 ORTHO05D009163 9.2e-80 300.8 234 65.4
HanXRQChr06g0175371 Helianthus annuus HOM05D007261 ORTHO05D009163 1.2e-79 300.4 225 69.3
Glyma.08G363400 Glycine max HOM05D007261 ORTHO05D009163 2.7e-79 299.3 225 67.6
Glyma.18G298600 Glycine max HOM05D007261 ORTHO05D009163 3.5e-79 298.9 225 67.1
Phvul.008G004000 Phaseolus vulgaris HOM05D007261 ORTHO05D009163 7.8e-79 297.7 225 67.1
Ah.03g147240 Amaranthus hybridus HOM05D007261 ORTHO05D009163 2.3e-78 296.2 226 67.7
Thhalv10011722m.g Eutrema salsugineum HOM05D007261 ORTHO05D009163 3.9e-78 295.4 232 62.9
Ca_04086_v3 Cicer arietinum L. HOM05D007261 ORTHO05D009163 6.6e-78 294.7 238 64.3
Oeu021934.1 Olea europaea HOM05D007261 ORTHO05D009163 6.6e-78 294.7 238 64.3
Psat3g206640 Pisum sativum HOM05D007261 ORTHO05D009163 6.6e-78 294.7 242 64.5
SalBow2G2703 Salvia bowleyana HOM05D007261 ORTHO05D009163 1.1e-77 293.9 251 62.9
Lj3A1078G18 Lonicera japonica HOM05D007261 ORTHO05D009163 1.5e-77 293.5 206 71.4
THA.LOC104801410 Tarenaya hassleriana HOM05D007261 ORTHO05D009163 1.9e-77 293.1 228 65.4
BcaB07g33898 Brassica carinata HOM05D007261 ORTHO05D009163 4.3e-77 292.0 228 63.6
Sp1g33800 Schrenkiella parvula HOM05D007261 ORTHO05D009163 7.3e-77 291.2 232 62.1
HPP92_020118 Vanilla planifolia HOM05D007261 ORTHO05D009163 7.3e-77 291.2 238 63.4
Lsat_1_v5_gn_3_33201 Lactuca sativa HOM05D007261 ORTHO05D009163 9.5e-77 290.8 233 63.5
BolC6t35245H Brassica oleracea HOM05D007261 ORTHO05D009163 1.2e-76 290.4 237 61.6
BraA10t42964Z Brassica rapa HOM05D007261 ORTHO05D009163 1.2e-76 290.4 237 60.8
A10p07140 Brassica napus HOM05D007261 ORTHO05D009163 1.6e-76 290.0 237 60.8
C06p01120 Brassica napus HOM05D007261 ORTHO05D009163 1.6e-76 290.0 237 61.6
ECA246G1741 Erigeron canadensis HOM05D007261 ORTHO05D009163 6.2e-76 288.1 233 62.7
Migut.K01136 Erythranthe guttata HOM05D007261 ORTHO05D009163 8.1e-76 287.7 235 66.0
Medtr7g006790 Medicago truncatula HOM05D007261 ORTHO05D009163 8.1e-76 287.7 239 61.9
Medtr7g006800 Medicago truncatula HOM05D007261 ORTHO05D009163 8.1e-76 287.7 239 61.9
Sc17g0001500 Simmondsia chinensis HOM05D007261 ORTHO05D009163 6.8e-75 284.6 189 71.4
TPR.G9720 Trifolium pratense HOM05D007261 ORTHO05D009163 8.9e-75 284.3 217 66.8
VMungo1383G1401 Vigna mungo HOM05D007261 ORTHO05D009163 3.4e-74 282.3 212 68.4
CDE05G0176 Ceratophyllum demersum HOM05D007261 ORTHO05D009163 3.7e-73 278.9 244 59.8
ATR0582G128 Amborella trichopoda HOM05D007261 ORTHO05D009163 2.4e-72 276.2 222 59.9
Haze_12532 Corylus avellana HOM05D007261 ORTHO05D009163 1.3e-70 270.4 371 43.7
Zm00001eb197910 Zea mays HOM05D007261 ORTHO05D009163 1.7e-70 270.0 238 60.1
Os11g0537300 Oryza sativa ssp. japonica HOM05D007261 ORTHO05D009163 5.1e-70 268.5 238 58.4
unitig_26.g10437 Utricularia gibba HOM05D000361 ORTHO05D007482 1.5e-69 266.9 228 60.1
CiPaw.05G097700 Carya illinoinensis HOM05D007261 ORTHO05D009163 1.5e-66 256.9 226 60.2
SEGI_21849 Sequoiadendron giganteum HOM05D007261 ORTHO05D009163 2.7e-63 246.1 198 63.1
SMO351G0136 Selaginella moellendorffii HOM05D007261 ORTHO05D009163 4.4e-58 228.8 200 57.5
AagrBONN_evm.TU.Sc2ySwM_228.5286 Anthoceros agrestis HOM05D007261 ORTHO05D009163 1.1e-56 224.2 213 55.4
Pp3c19_21680 Physcomitrium patens HOM05D007261 ORTHO05D009163 7.8e-55 218.0 227 52.4
Mapoly0073s0041 Marchantia polymorpha HOM05D007261 ORTHO05D009163 2.3e-54 216.5 214 50.9
HPP92_020128 Vanilla planifolia HOM05D007261 ORTHO05D009163 6.4e-49 198.4 209 54.1
Nitab4.5_0002113g0010 Nicotiana tabacum HOM05D000361 ORTHO05D007482 1.3e-44 184.1 161 60.9
CBR_g44525 Chara braunii HOM05D007261 ORTHO05D009163 4.8e-44 182.2 219 46.1
BcaC08g42890 Brassica carinata HOM05D007261 ORTHO05D009163 6.2e-44 181.8 139 64.0
Potri.003G159901 Populus trichocarpa HOM05D007261 ORTHO05D009163 2.4e-35 153.3 98 76.5
Actinidia30573 Actinidia chinensis HOM05D007261 ORTHO05D009163 1.4e-32 144.1 101 70.3
CDE05G1764 Ceratophyllum demersum HOM05D007261 ORTHO05D009163 2.7e-31 139.8 127 57.5
PRCOL_00004129 Prasinoderma coloniale HOM05D007261 ORTHO05D009163 1.5e-18 97.4 218 35.3
Hma1.2p1_0738F.1_g211000 Hydrangea macrophylla HOM05D007261 ORTHO05D009163 4.5e-18 95.9 79 68.4
Cre06.g262000 Chlamydomonas reinhardtii HOM05D001530 ORTHO05D003676 3.2e-08 63.2 189 25.9
PRCOL_00001953 Prasinoderma coloniale HOM05D005243 ORTHO05D006670 2.7e-07 60.1 187 28.9


User provided reference genes

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