Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G0136 Cannabis sativa HOM05D001404 ORTHO05D009009 3.2e-233 811.2 372 100.0
QL03p067270 Quercus lobata HOM05D001404 ORTHO05D009009 8.7e-154 547.4 378 68.8
MD16G1084700 Malus domestica HOM05D001404 ORTHO05D009009 1.3e-149 533.5 378 65.3
Prupe.1G261400 Prunus persica HOM05D001404 ORTHO05D009009 2.9e-149 532.3 378 66.1
RcHm_v2.0_Chr4g0444821 Rosa chinensis HOM05D001404 ORTHO05D009009 9.4e-148 527.3 375 65.3
Ciclev10031837m.g Citrus clementina HOM05D001404 ORTHO05D009009 2.3e-146 522.7 381 66.1
FAN12G1952 Fragaria x ananassa HOM05D001404 ORTHO05D009009 5.1e-146 521.5 382 64.1
Thecc.02G239700 Theobroma cacao HOM05D001404 ORTHO05D009009 4.4e-145 518.5 378 65.3
CiPaw.05G145400 Carya illinoinensis HOM05D001404 ORTHO05D009009 9.7e-145 517.3 379 65.4
FvH4_4g35220 Fragaria vesca HOM05D001404 ORTHO05D009009 4.8e-144 515.0 388 63.1
Duzib268G0371 Durio zibethinus HOM05D001404 ORTHO05D009009 6.9e-143 511.1 378 64.3
TAR374G0908 Trochodendron aralioides HOM05D001404 ORTHO05D009009 2.0e-142 509.6 380 63.4
Gohir.A03G143500 Gossypium hirsutum HOM05D001404 ORTHO05D009009 1.0e-141 507.3 377 62.3
GSVIVG01020147001 Vitis vinifera HOM05D001404 ORTHO05D009009 4.2e-140 501.9 379 61.7
FAN07G0845 Fragaria x ananassa HOM05D001404 ORTHO05D009009 5.5e-140 501.5 382 61.0
Aqoxy3G00874 Aquilegia oxysepala HOM05D001404 ORTHO05D009009 7.2e-140 501.1 382 61.5
Gorai.005G187100 Gossypium raimondii HOM05D001404 ORTHO05D009009 9.4e-140 500.7 377 62.1
CSS0043132 Camellia sinensis var. sinensis HOM05D001404 ORTHO05D002309 1.2e-139 500.4 378 62.4
Potri.010G037600 Populus trichocarpa HOM05D001404 ORTHO05D009009 8.8e-138 494.2 386 61.9
Actinidia08188 Actinidia chinensis HOM05D001404 ORTHO05D009009 9.7e-137 490.7 379 61.5
AT1G70150 Arabidopsis thaliana HOM05D001404 ORTHO05D009009 2.2e-136 489.6 381 61.4
FAN22G1682 Fragaria x ananassa HOM05D001404 ORTHO05D009009 4.8e-136 488.4 382 60.5
AL2G29430 Arabidopsis lyrata HOM05D001404 ORTHO05D009009 7.0e-135 484.6 378 59.8
COL.COLO4_36283 Corchorus olitorius HOM05D001404 ORTHO05D002309 1.2e-134 483.8 361 64.3
Manes.01G195300 Manihot esculenta HOM05D001404 ORTHO05D009009 1.2e-134 483.8 379 59.4
Glyma.01G037400 Glycine max HOM05D001404 ORTHO05D009009 4.5e-134 481.9 386 60.1
Sed0021588 Sechium edule HOM05D001404 ORTHO05D009009 5.9e-134 481.5 406 55.7
vmacro01204 Vaccinium macrocarpon HOM05D001404 ORTHO05D009009 5.9e-134 481.5 400 58.0
TWI36G0457 Tripterygium wilfordii HOM05D001404 ORTHO05D009009 1.3e-133 480.3 403 58.3
Carub.0002s1684 Capsella rubella HOM05D001404 ORTHO05D009009 1.7e-133 479.9 380 59.2
Sopen05g002340 Solanum pennellii HOM05D001404 ORTHO05D009009 1.7e-133 479.9 379 58.8
Solyc05g006410.3 Solanum lycopersicum HOM05D001404 ORTHO05D009009 2.9e-133 479.2 379 58.8
PGR119G0405 Punica granatum HOM05D001404 ORTHO05D009009 1.1e-132 477.2 378 60.3
Aa31LG4G10750 Aethionema arabicum HOM05D001404 ORTHO05D009009 1.9e-132 476.5 400 57.0
Lj2g0007192 Lotus japonicus HOM05D001404 ORTHO05D009009 2.5e-132 476.1 379 58.8
Eucgr.B02570 Eucalyptus grandis HOM05D001404 ORTHO05D009009 4.2e-132 475.3 381 60.1
PGSC0003DMG401022613 Solanum tuberosum HOM05D001404 ORTHO05D009009 7.2e-132 474.6 379 57.8
SHI05275 Sapria himalayana HOM05D001404 ORTHO05D009009 1.6e-131 473.4 379 56.7
CARHR063240 Cardamine hirsuta HOM05D001404 ORTHO05D002309 2.1e-131 473.0 379 58.6
Sp5g25260 Schrenkiella parvula HOM05D001404 ORTHO05D009009 1.0e-130 470.7 380 57.6
Lalb_Chr05g0217271 Lupinus albus HOM05D001404 ORTHO05D009009 1.8e-130 469.9 379 58.0
C06p44030 Brassica napus HOM05D001404 ORTHO05D009009 2.3e-130 469.5 378 58.7
BolC6t39476H Brassica oleracea HOM05D001404 ORTHO05D009009 2.3e-130 469.5 378 58.7
Ca_24163_v3 Cicer arietinum L. HOM05D001404 ORTHO05D002309 4.0e-130 468.8 381 59.6
BraA07t31231Z Brassica rapa HOM05D001404 ORTHO05D009009 1.2e-129 467.2 382 58.4
VMungo1215G3058 Vigna mungo HOM05D001404 ORTHO05D009009 1.2e-129 467.2 377 59.2
Sc14g0008480 Simmondsia chinensis HOM05D001355 ORTHO05D003368 3.3e-129 465.7 375 58.7
THA.LOC104822951 Tarenaya hassleriana HOM05D001404 ORTHO05D009009 3.3e-129 465.7 376 58.2
A07p36630 Brassica napus HOM05D001404 ORTHO05D009009 4.4e-129 465.3 382 57.6
Thhalv10018717m.g Eutrema salsugineum HOM05D001404 ORTHO05D009009 4.4e-129 465.3 380 57.6
HanXRQChr17g0570291 Helianthus annuus HOM05D001404 ORTHO05D009009 5.7e-129 464.9 380 58.4
Medtr5g036470 Medicago truncatula HOM05D001404 ORTHO05D009009 8.2e-128 461.1 374 58.6
Haze_12124 Corylus avellana HOM05D001404 ORTHO05D002309 1.4e-127 460.3 342 63.5
Psat2g112600 Pisum sativum HOM05D001404 ORTHO05D009009 1.4e-127 460.3 382 58.1
CAN.G159.8 Capsicum annuum HOM05D001404 ORTHO05D009009 1.8e-127 459.9 379 57.3
BcaC08g46464 Brassica carinata HOM05D001404 ORTHO05D009009 3.5e-126 455.7 379 57.8
Rhsim12G0051800 Rhododendron simsii HOM05D001404 ORTHO05D009009 1.7e-125 453.4 469 49.5
MSTRG.7858 Avicennia marina HOM05D001404 ORTHO05D009009 3.8e-125 452.2 378 55.3
Cc11_g14260 Coffea canephora HOM05D001404 ORTHO05D009009 8.5e-125 451.1 377 57.6
Lsat_1_v5_gn_4_6141 Lactuca sativa HOM05D001404 ORTHO05D009009 3.2e-124 449.1 364 58.8
arahy.Tifrunner.gnm1.ann1.2TJ8DU Arachis hypogaea HOM05D001404 ORTHO05D009009 4.2e-124 448.7 395 55.2
PSO161G0115 Papaver somniferum HOM05D001404 ORTHO05D009009 4.2e-124 448.7 380 57.1
Cpa.g.sc1960.1 Carica papaya HOM05D001404 ORTHO05D009009 5.5e-124 448.4 348 60.9
Peaxi162Scf00828g00020 Petunia axillaris HOM05D001404 ORTHO05D009009 1.6e-123 446.8 379 57.5
Oeu028546.1 Olea europaea HOM05D001404 ORTHO05D009009 1.4e-122 443.7 379 57.3
Lj6A799T78 Lonicera japonica HOM05D001404 ORTHO05D009009 1.2e-121 440.7 384 55.7
SalBow2G3155 Salvia bowleyana HOM05D001404 ORTHO05D009009 1.2e-121 440.7 380 54.7
CDE10G0936 Ceratophyllum demersum HOM05D001404 ORTHO05D009009 2.2e-120 436.4 376 55.3
Nn4g22934 Nelumbo nucifera HOM05D001404 ORTHO05D009009 8.3e-120 434.5 346 59.0
ClCG05G024960 Citrullus lanatus HOM05D001404 ORTHO05D009009 1.1e-119 434.1 351 57.8
Migut.L01385 Erythranthe guttata HOM05D001404 ORTHO05D009009 5.4e-119 431.8 379 55.1
EL10Ac6g13111 Beta vulgaris HOM05D001404 ORTHO05D009009 7.0e-119 431.4 373 53.4
Nitab4.5_0003602g0020 Nicotiana tabacum HOM05D001404 ORTHO05D009009 2.0e-118 429.9 422 50.2
Hund25295 Selenicereus undatus HOM05D001404 ORTHO05D009009 2.7e-118 429.5 373 56.3
ECA234G1431 Erigeron canadensis HOM05D001404 ORTHO05D002309 5.9e-118 428.3 363 55.9
SGA_v2.0_scaffold8G04270 Striga asiatica HOM05D001404 ORTHO05D009009 5.2e-114 415.2 391 53.2
Os07g0481000 Oryza sativa ssp. japonica HOM05D001404 ORTHO05D009009 4.4e-113 412.1 379 53.0
SalBow2G3257 Salvia bowleyana HOM05D001404 ORTHO05D009009 2.2e-112 409.8 380 52.9
Gohir.D02G166800 Gossypium hirsutum HOM05D001404 ORTHO05D009009 8.9e-106 387.9 303 60.7
Nitab4.5_0002312g0090 Nicotiana tabacum HOM05D001404 ORTHO05D009009 1.5e-105 387.1 336 55.1
CsaV3_5G031930 Cucumis sativus L. HOM05D001404 ORTHO05D009009 9.8e-105 384.4 310 58.4
TPR.G17319 Trifolium pratense HOM05D001404 ORTHO05D009009 1.3e-104 384.0 348 52.9
Sabra10G0028400 Salix brachista HOM05D001404 ORTHO05D009009 2.4e-103 379.8 321 56.7
arahy.Tifrunner.gnm1.ann1.VUK41S Arachis hypogaea HOM05D001404 ORTHO05D009009 2.9e-96 356.3 385 47.5
AUR62026309 Chenopodium quinoa HOM05D001404 ORTHO05D009009 2.0e-94 350.1 385 47.3
AagrBONN_evm.TU.Sc2ySwM_368.625 Anthoceros agrestis HOM05D001404 ORTHO05D009009 3.0e-93 346.3 393 45.0
Dinv24916 Davidia involucrata HOM05D001404 ORTHO05D009009 6.6e-93 345.1 285 57.5
Mapoly0056s0134 Marchantia polymorpha HOM05D001404 ORTHO05D009009 1.5e-92 344.0 373 43.7
Zm00001eb321400 Zea mays HOM05D001404 ORTHO05D009009 1.2e-91 340.9 378 45.5
HPP92_002468 Vanilla planifolia HOM05D001404 ORTHO05D009009 1.4e-90 337.4 301 52.5
FAN17G2278 Fragaria x ananassa HOM05D001404 ORTHO05D009009 1.8e-90 337.0 240 63.3
Pp3c9_21180 Physcomitrium patens HOM05D001404 ORTHO05D009009 3.9e-85 319.3 375 41.6
Phvul.002G076800 Phaseolus vulgaris HOM05D001404 ORTHO05D009009 9.5e-84 314.7 284 53.2
Glyma.02G027500 Glycine max HOM05D001404 ORTHO05D009009 9.9e-81 304.7 265 57.0
unitig_749.g13260 Utricularia gibba HOM05D001404 ORTHO05D009009 9.9e-81 304.7 398 40.7
SMO238G0008 Selaginella moellendorffii HOM05D001404 ORTHO05D009009 1.0e-77 294.7 348 44.0
Lj4g0012021 Lotus japonicus HOM05D001404 ORTHO05D009009 1.3e-77 294.3 377 41.9
SMO091G0008 Selaginella moellendorffii HOM05D001404 ORTHO05D009009 1.6e-75 287.3 374 41.7
ATR0712G045 Amborella trichopoda HOM05D001404 ORTHO05D009009 3.6e-67 259.6 215 58.1
SalBow2G0480 Salvia bowleyana HOM05D001404 ORTHO05D009009 4.0e-66 256.1 310 43.9
Nitab4.5_0003254g0060 Nicotiana tabacum HOM05D007895 ORTHO05D010017 1.3e-45 188.0 374 33.7
CAN.G569.16 Capsicum annuum HOM05D007895 ORTHO05D010017 1.8e-45 187.6 369 33.6
Nitab4.5_0007482g0010 Nicotiana tabacum HOM05D007895 ORTHO05D010017 3.0e-45 186.8 366 33.1
FvH4_3g02321 Fragaria vesca HOM05D007895 ORTHO05D010017 3.3e-44 183.3 367 35.4
Glyma.13G205700 Glycine max HOM05D007895 ORTHO05D010017 9.7e-44 181.8 366 34.4
Phvul.006G150500 Phaseolus vulgaris HOM05D007895 ORTHO05D010017 2.2e-43 180.6 366 34.2
Glyma.15G106800 Glycine max HOM05D007895 ORTHO05D010017 3.7e-43 179.9 366 33.9
SMO351G0184 Selaginella moellendorffii HOM05D007895 ORTHO05D010017 4.8e-43 179.5 372 31.5
ATR0752G052 Amborella trichopoda HOM05D007895 ORTHO05D010017 8.2e-43 178.7 366 30.6
Lj6g0014344 Lotus japonicus HOM05D007895 ORTHO05D010017 8.2e-43 178.7 372 35.2
Manes.17G037900 Manihot esculenta HOM05D007895 ORTHO05D010017 8.2e-43 178.7 371 34.2
VMungo0540G0331 Vigna mungo HOM05D007895 ORTHO05D010017 8.2e-43 178.7 366 33.9
Rhsim13G0155200 Rhododendron simsii HOM05D007895 ORTHO05D010017 1.4e-42 177.9 365 34.5
EL10Ac8g20029 Beta vulgaris HOM05D007895 ORTHO05D010017 4.1e-42 176.4 368 31.5
CBR_g72156 Chara braunii HOM05D001404 ORTHO05D009009 6.9e-42 175.6 298 34.2
BcaNung02255 Brassica carinata HOM05D007895 ORTHO05D010017 9.0e-42 175.3 366 30.6
Cfa000239 Carpinus fangiana HOM05D007895 ORTHO05D010017 1.2e-41 174.9 371 34.0
Gohir.D05G172500 Gossypium hirsutum HOM05D007895 ORTHO05D010017 1.2e-41 174.9 368 33.7
Gorai.009G177700 Gossypium raimondii HOM05D007895 ORTHO05D010017 1.2e-41 174.9 368 33.7
Hma1.2p1_0057F.1_g031900 Hydrangea macrophylla HOM05D007895 ORTHO05D010017 2.0e-41 174.1 370 31.9
TPR.G7647 Trifolium pratense HOM05D007895 ORTHO05D010017 2.6e-41 173.7 365 34.0
RcHm_v2.0_Chr5g0003541 Rosa chinensis HOM05D007895 ORTHO05D010017 3.4e-41 173.3 367 34.6
BraA01t01263Z Brassica rapa HOM05D007895 ORTHO05D010017 4.5e-41 172.9 366 28.7
Thecc.06G218400 Theobroma cacao HOM05D007895 ORTHO05D010017 5.9e-41 172.6 368 32.9
Sp7g20040 Schrenkiella parvula HOM05D007895 ORTHO05D010017 7.6e-41 172.2 364 30.8
Gohir.A05G169300 Gossypium hirsutum HOM05D007895 ORTHO05D010017 1.0e-40 171.8 368 33.4
MBI18_g12452_MAGBIO Magnolia biondii HOM05D007895 ORTHO05D010017 1.0e-40 171.8 369 32.2
Psat1g181720 Pisum sativum HOM05D007895 ORTHO05D010017 1.0e-40 171.8 366 33.9
TAR627G0668 Trochodendron aralioides HOM05D007895 ORTHO05D010017 1.0e-40 171.8 368 32.9
AagrBONN_evm.TU.Sc2ySwM_117.3222 Anthoceros agrestis HOM05D007895 ORTHO05D010017 1.7e-40 171.0 370 29.2
COL.COLO4_31754 Corchorus olitorius HOM05D007895 ORTHO05D010017 1.7e-40 171.0 368 32.6
TWI63G1238 Tripterygium wilfordii HOM05D007895 ORTHO05D010017 2.2e-40 170.6 366 33.1
BcaC09g51191 Brassica carinata HOM05D007895 ORTHO05D010017 2.9e-40 170.2 366 28.7
C01p15890 Brassica napus HOM05D007895 ORTHO05D010017 2.9e-40 170.2 366 28.7
BolC1t01543H Brassica oleracea HOM05D007895 ORTHO05D010017 2.9e-40 170.2 366 28.7
Ciclev10017921m.g Citrus clementina HOM05D007895 ORTHO05D010017 3.8e-40 169.9 370 33.0
Duzib235G1140 Durio zibethinus HOM05D007895 ORTHO05D010017 5.0e-40 169.5 368 32.3
MD05G1343800 Malus domestica HOM05D007895 ORTHO05D010017 5.0e-40 169.5 368 33.2
Carub.0007s1948 Capsella rubella HOM05D007895 ORTHO05D010017 6.5e-40 169.1 367 29.4
Potri.011G001800 Populus trichocarpa HOM05D007895 ORTHO05D010017 6.5e-40 169.1 377 33.4
Oeu033195.1 Olea europaea HOM05D007895 ORTHO05D010017 8.5e-40 168.7 369 33.1
QL05p073549 Quercus lobata HOM05D007895 ORTHO05D010017 1.1e-39 168.3 368 32.3
QL05p073789 Quercus lobata HOM05D007895 ORTHO05D010017 1.1e-39 168.3 368 32.3
Medtr2g022910 Medicago truncatula HOM05D007895 ORTHO05D010017 1.4e-39 167.9 368 34.0
MD10G1319500 Malus domestica HOM05D007895 ORTHO05D010017 4.2e-39 166.4 368 32.9
Mapoly0063s0045 Marchantia polymorpha HOM05D007895 ORTHO05D010017 4.2e-39 166.4 372 30.9
CSS0036667 Camellia sinensis var. sinensis HOM05D007895 ORTHO05D010017 5.5e-39 166.0 366 31.7
Lalb_Chr18g0056281 Lupinus albus HOM05D007895 ORTHO05D010017 5.5e-39 166.0 370 33.5
Sabra11G0000700 Salix brachista HOM05D007895 ORTHO05D010017 5.5e-39 166.0 377 33.2
Aqoxy1G03251 Aquilegia oxysepala HOM05D007895 ORTHO05D010017 1.2e-38 164.9 371 32.6
Prupe.4G023000 Prunus persica HOM05D007895 ORTHO05D010017 1.2e-38 164.9 368 32.9
Dinv13880 Davidia involucrata HOM05D007895 ORTHO05D010017 2.1e-38 164.1 347 33.1
Ah.09g235010 Amaranthus hybridus HOM05D007895 ORTHO05D010017 3.0e-37 160.2 360 31.9
DCAR_004211 Daucus carota HOM05D007895 ORTHO05D010017 3.0e-37 160.2 368 30.7
Lsat_1_v5_gn_7_17681 Lactuca sativa HOM05D007895 ORTHO05D010017 3.0e-37 160.2 362 30.4
PGR004G2409 Punica granatum HOM05D007895 ORTHO05D010017 5.1e-37 159.5 373 31.1
THA.LOC104806298 Tarenaya hassleriana HOM05D007895 ORTHO05D010017 6.7e-37 159.1 366 29.2
Cc09_g01830 Coffea canephora HOM05D007895 ORTHO05D010017 1.7e-35 154.5 366 30.9
AUR62026503 Chenopodium quinoa HOM05D001404 ORTHO05D009009 2.6e-33 147.1 175 48.6
AagrBONN_evm.TU.Sc2ySwM_117.3431 Anthoceros agrestis HOM05D001404 ORTHO05D009009 1.0e-32 145.2 153 45.8
A01p13190 Brassica napus HOM05D007895 ORTHO05D010017 1.0e-32 145.2 365 25.8
Atru.chr11.1937 Acer truncatum HOM05D001404 ORTHO05D002309 1.3e-32 144.8 203 41.4
CDE02G0632 Ceratophyllum demersum HOM05D007895 ORTHO05D010017 6.7e-29 132.5 367 28.1
MCO10G058 Micromonas commoda HOM05D001404 ORTHO05D009009 2.4e-26 124.0 452 25.4
MD13G1085400 Malus domestica HOM05D001404 ORTHO05D009009 3.1e-26 123.6 86 67.4
Mapoly0021s0002 Marchantia polymorpha HOM05D007895 ORTHO05D010017 2.0e-25 120.9 238 31.9
SEGI_39493 Sequoiadendron giganteum HOM05D001404 ORTHO05D009009 1.7e-24 117.9 130 43.1
CDE05G3159 Ceratophyllum demersum HOM05D007895 ORTHO05D010017 3.8e-24 116.7 291 31.3
ATR0712G115 Amborella trichopoda HOM05D001404 ORTHO05D009009 3.6e-22 110.2 74 62.2
SalBow7G1134 Salvia bowleyana HOM05D001404 ORTHO05D009009 3.6e-22 110.2 136 41.2
SEGI_25303 Sequoiadendron giganteum HOM05D001404 ORTHO05D009009 5.7e-20 102.8 128 38.3
SEGI_33690 Sequoiadendron giganteum HOM05D001404 ORTHO05D009009 2.8e-19 100.5 122 39.3
Lalb_Chr15g0087511 Lupinus albus HOM05D007895 ORTHO05D010017 9.1e-18 95.5 198 33.8
TPR.G17205 Trifolium pratense HOM05D001404 ORTHO05D009009 1.6e-17 94.7 73 57.5
Duzib251G0488 Durio zibethinus HOM05D001404 ORTHO05D009009 5.5e-15 86.3 64 57.8
Medtr5g036455 Medicago truncatula HOM05D001404 ORTHO05D009009 1.0e-13 82.0 67 55.2
Lalb_Chr15g0087501 Lupinus albus HOM05D007895 ORTHO05D010017 4.0e-13 80.1 114 40.4
HanXRQChr17g0570121 Helianthus annuus HOM05D001404 ORTHO05D009009 1.2e-12 78.6 83 43.4
Lsat_1_v5_gn_1_78741 Lactuca sativa HOM05D000538 ORTHO05D009009 2.6e-12 77.4 75 52.0
Duzib160G0114 Durio zibethinus HOM05D007895 ORTHO05D010017 3.7e-11 73.6 183 26.8
Lsat_1_v5_gn_1_40080 Lactuca sativa HOM05D000207 ORTHO05D000191 3.8e-08 63.5 55 50.9
MELO3C012030.2 Cucumis melo HOM05D001404 ORTHO05D009009 4.7e-06 56.6 35 68.6


User provided reference genes

Program Settings