Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G0135 Cannabis sativa HOM05D004417 ORTHO05D005528 0.0e+00 3169.4 1603 100.0
MD16G1020900 Malus domestica HOM05D004417 ORTHO05D005528 0.0e+00 2645.2 1605 82.1
Prupe.1G331400 Prunus persica HOM05D004417 ORTHO05D005528 0.0e+00 2637.4 1606 81.8
MD13G1030100 Malus domestica HOM05D004417 ORTHO05D005528 0.0e+00 2627.4 1606 81.7
Atru.chr11.518 Acer truncatum HOM05D004417 ORTHO05D005528 0.0e+00 2612.0 1611 82.1
Manes.17G082000 Manihot esculenta HOM05D004417 ORTHO05D005528 0.0e+00 2610.9 1611 80.8
Ciclev10014030m.g Citrus clementina HOM05D004417 ORTHO05D005528 0.0e+00 2604.3 1613 80.8
RcHm_v2.0_Chr4g0443371 Rosa chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2602.4 1606 80.9
Thecc.02G290300 Theobroma cacao HOM05D004417 ORTHO05D005528 0.0e+00 2593.9 1609 81.0
FvH4_4g33860 Fragaria vesca HOM05D004417 ORTHO05D005528 0.0e+00 2590.1 1605 80.4
Dinv26250 Davidia involucrata HOM05D004417 ORTHO05D005528 0.0e+00 2587.0 1602 80.0
FAN12G0749 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2584.3 1618 79.9
FAN17G2093 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2579.7 1615 79.6
Gorai.005G158900 Gossypium raimondii HOM05D004417 ORTHO05D005528 0.0e+00 2562.3 1609 79.7
Potri.008G133300 Populus trichocarpa HOM05D004417 ORTHO05D005528 0.0e+00 2560.4 1612 79.3
Glyma.09G123500 Glycine max HOM05D004417 ORTHO05D005528 0.0e+00 2551.2 1612 79.2
CsaV3_5G028240 Cucumis sativus L. HOM05D004417 ORTHO05D005528 0.0e+00 2545.8 1611 79.3
TWI74G0839 Tripterygium wilfordii HOM05D004417 ORTHO05D005528 0.0e+00 2532.3 1608 78.0
Sed0000894 Sechium edule HOM05D004417 ORTHO05D005528 0.0e+00 2521.5 1616 78.7
Lj2g0013863 Lotus japonicus HOM05D004417 ORTHO05D005528 0.0e+00 2512.6 1617 78.0
Eucgr.B02952 Eucalyptus grandis HOM05D004417 ORTHO05D005528 0.0e+00 2506.5 1607 78.1
Phvul.003G021100 Phaseolus vulgaris HOM05D004417 ORTHO05D005528 0.0e+00 2501.9 1615 77.6
CSS0030927 Camellia sinensis var. sinensis HOM05D004417 ORTHO05D005528 0.0e+00 2500.7 1615 78.4
QL03p034852 Quercus lobata HOM05D004417 ORTHO05D005528 0.0e+00 2495.7 1504 83.1
Actinidia25877 Actinidia chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2494.2 1601 78.1
CSS0010110 Camellia sinensis var. sinensis HOM05D004417 ORTHO05D005528 0.0e+00 2487.2 1604 78.2
MELO3C005286.2 Cucumis melo HOM05D004417 ORTHO05D005528 0.0e+00 2482.6 1638 77.1
Medtr1g031910 Medicago truncatula HOM05D004417 ORTHO05D005528 0.0e+00 2480.7 1612 76.7
Psat6g045000 Pisum sativum HOM05D004417 ORTHO05D005528 0.0e+00 2476.0 1612 76.9
ClCG01G006440 Citrullus lanatus HOM05D004417 ORTHO05D005528 0.0e+00 2473.0 1623 77.4
TAR374G0310 Trochodendron aralioides HOM05D004417 ORTHO05D005528 0.0e+00 2469.9 1609 77.8
Lalb_Chr13g0290691 Lupinus albus HOM05D004417 ORTHO05D005528 0.0e+00 2469.1 1581 78.2
Ca_12568_v3 Cicer arietinum L. HOM05D004417 ORTHO05D005528 0.0e+00 2452.2 1612 76.1
TPR.G36876 Trifolium pratense HOM05D004417 ORTHO05D005528 0.0e+00 2428.7 1633 74.3
Dinv18635 Davidia involucrata HOM05D004417 ORTHO05D005528 0.0e+00 2424.8 1505 80.1
PGR042G2175 Punica granatum HOM05D004417 ORTHO05D005528 0.0e+00 2424.4 1607 75.9
Lj3A865G68 Lonicera japonica HOM05D004417 ORTHO05D005528 0.0e+00 2416.7 1636 74.8
PGR042G0049 Punica granatum HOM05D004417 ORTHO05D005528 0.0e+00 2412.9 1607 75.4
Cc11_g08040 Coffea canephora HOM05D004417 ORTHO05D005528 0.0e+00 2410.6 1605 74.4
EL10Ac6g14152 Beta vulgaris HOM05D004417 ORTHO05D005528 0.0e+00 2389.4 1605 75.1
Sabra08G0101900 Salix brachista HOM05D004417 ORTHO05D005528 0.0e+00 2387.5 1922 65.6
Nn4g24297 Nelumbo nucifera HOM05D004417 ORTHO05D005528 0.0e+00 2377.8 1607 74.1
PSO478G2641 Papaver somniferum HOM05D004417 ORTHO05D005528 0.0e+00 2377.4 1614 73.2
Sopen05g013790 Solanum pennellii HOM05D004417 ORTHO05D005528 0.0e+00 2374.7 1596 74.1
PSO017G2325 Papaver somniferum HOM05D004417 ORTHO05D005528 0.0e+00 2372.4 1615 72.9
THA.LOC104822992 Tarenaya hassleriana HOM05D004417 ORTHO05D005528 0.0e+00 2364.3 1618 73.9
MSTRG.7613 Avicennia marina HOM05D004417 ORTHO05D005528 0.0e+00 2356.3 1591 74.2
SalBow8G1470 Salvia bowleyana HOM05D004417 ORTHO05D005528 0.0e+00 2349.3 1662 71.5
Eucgr.B02949 Eucalyptus grandis HOM05D004417 ORTHO05D005528 0.0e+00 2346.2 1605 74.1
Gohir.D02G141800 Gossypium hirsutum HOM05D004417 ORTHO05D005528 0.0e+00 2345.9 1444 80.6
HanXRQChr17g0567351 Helianthus annuus HOM05D004417 ORTHO05D005528 0.0e+00 2345.1 1597 73.2
Ah.03g137400 Amaranthus hybridus HOM05D004417 ORTHO05D005528 0.0e+00 2342.4 1604 73.1
AUR62038465 Chenopodium quinoa HOM05D004417 ORTHO05D005528 0.0e+00 2341.2 1617 73.7
GSVIVG01011680001 Vitis vinifera HOM05D004417 ORTHO05D005528 0.0e+00 2334.7 1651 72.6
Carub.0001s2282 Capsella rubella HOM05D004417 ORTHO05D005528 0.0e+00 2329.7 1625 72.9
Aa31LG7G7270 Aethionema arabicum HOM05D004417 ORTHO05D005528 0.0e+00 2328.1 1623 73.1
AL1G37020 Arabidopsis lyrata HOM05D004417 ORTHO05D005528 0.0e+00 2323.1 1615 73.0
Lsat_1_v5_gn_3_55840 Lactuca sativa HOM05D004417 ORTHO05D005528 0.0e+00 2322.7 1600 71.9
ECA246G0702 Erigeron canadensis HOM05D004417 ORTHO05D005528 0.0e+00 2322.4 1598 72.3
Lalb_Chr16g0387721 Lupinus albus HOM05D004417 ORTHO05D005528 0.0e+00 2318.5 1600 73.0
Aqoxy3G00033 Aquilegia oxysepala HOM05D004417 ORTHO05D005528 0.0e+00 2317.7 1614 72.2
CARHR023690 Cardamine hirsuta HOM05D004417 ORTHO05D005528 0.0e+00 2313.5 1620 72.5
Sp1g20700 Schrenkiella parvula HOM05D004417 ORTHO05D005528 0.0e+00 2311.6 1620 72.8
AT1G23230 Arabidopsis thaliana HOM05D004417 ORTHO05D005528 0.0e+00 2307.3 1603 72.9
BcaB03g14154 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2278.1 1605 72.2
FAN07G1109 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2276.1 1413 79.5
Thhalv10006548m.g Eutrema salsugineum HOM05D004417 ORTHO05D005528 0.0e+00 2265.0 1616 72.0
Migut.L00554 Erythranthe guttata HOM05D004417 ORTHO05D005528 0.0e+00 2248.4 1586 71.2
BcaC06g35029 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2247.2 1613 71.2
BcaB07g32314 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2244.5 1604 71.0
Sc14g0006960 Simmondsia chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2244.5 1506 75.2
BraA07t29150Z Brassica rapa HOM05D004417 ORTHO05D005528 0.0e+00 2241.5 1617 70.9
A07p13940 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2239.5 1617 70.9
BolC5t30944H Brassica oleracea HOM05D004417 ORTHO05D005528 0.0e+00 2217.2 1614 70.3
A09p41530 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2211.4 1611 69.6
BolC7t42575H Brassica oleracea HOM05D004417 ORTHO05D005528 0.0e+00 2210.6 1613 70.4
C07p20490 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2209.1 1613 70.4
BraA09t39644Z Brassica rapa HOM05D004417 ORTHO05D005528 0.0e+00 2206.0 1616 69.3
C05p22460 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2204.9 1617 69.8
COL.COLO4_13080 Corchorus olitorius HOM05D004417 ORTHO05D005528 0.0e+00 2198.7 1407 80.3
arahy.Tifrunner.gnm1.ann1.GYT9TN Arachis hypogaea HOM05D004417 ORTHO05D005528 0.0e+00 2175.6 1950 59.8
CiPaw.05G190700 Carya illinoinensis HOM05D004417 ORTHO05D005528 0.0e+00 2166.7 1384 79.5
Oeu018613.1 Olea europaea HOM05D004417 ORTHO05D005528 0.0e+00 2154.8 1549 70.2
Zm00001eb253700 Zea mays HOM05D004417 ORTHO05D005528 0.0e+00 2120.5 1591 67.3
Os02g0732700 Oryza sativa ssp. japonica HOM05D004417 ORTHO05D005528 0.0e+00 2110.5 1594 67.5
CDE07G0372 Ceratophyllum demersum HOM05D004417 ORTHO05D005528 0.0e+00 2078.5 1599 65.7
Hund24934 Selenicereus undatus HOM05D004417 ORTHO05D005528 0.0e+00 2074.3 1464 72.4
SGA_v2.0_scaffold50G18460 Striga asiatica HOM05D004417 ORTHO05D005528 0.0e+00 2067.0 1625 65.3
ATR0753G138 Amborella trichopoda HOM05D004417 ORTHO05D005528 0.0e+00 2051.6 1591 66.2
BcaC05g26233 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2032.3 1621 65.6
Duzib251G0182 Durio zibethinus HOM05D004417 ORTHO05D005528 0.0e+00 1994.9 1197 82.5
HanXRQChr17g0566691 Helianthus annuus HOM05D004417 ORTHO05D005528 0.0e+00 1967.2 1601 63.1
Lsat_1_v5_gn_4_12821 Lactuca sativa HOM05D004417 ORTHO05D005528 0.0e+00 1922.1 1583 62.0
DCAR_007321 Daucus carota HOM05D004417 ORTHO05D005528 0.0e+00 1790.0 1568 61.8
AUR62014157 Chenopodium quinoa HOM05D004417 ORTHO05D005528 0.0e+00 1736.9 1101 78.6
vmacro00393 Vaccinium macrocarpon HOM05D004417 ORTHO05D005528 0.0e+00 1727.6 1216 72.5
Peaxi162Scf00376g00032 Petunia axillaris HOM05D004417 ORTHO05D005528 0.0e+00 1674.1 1412 63.5
Rhsim09G0063500 Rhododendron simsii HOM05D004417 ORTHO05D005528 0.0e+00 1567.4 1370 61.2
Nitab4.5_0000018g0020 Nicotiana tabacum HOM05D004417 ORTHO05D005528 0.0e+00 1536.9 976 77.6
Solyc05g016440.3 Solanum lycopersicum HOM05D004417 ORTHO05D005528 0.0e+00 1489.9 966 76.4
Mapoly0005s0093 Marchantia polymorpha HOM05D004417 ORTHO05D005528 0.0e+00 1442.9 1634 48.8
Pp3c27_2940 Physcomitrium patens HOM05D004417 ORTHO05D005528 0.0e+00 1419.8 1635 48.2
SEGI_05575 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 0.0e+00 1419.1 1212 59.4
SMO364G0727 Selaginella moellendorffii HOM05D004417 ORTHO05D005528 0.0e+00 1332.4 1576 45.9
DCAR_030256 Daucus carota HOM05D004417 ORTHO05D005528 0.0e+00 1236.9 1078 59.1
Gohir.A03G118100 Gossypium hirsutum HOM05D004417 ORTHO05D005528 0.0e+00 1204.1 732 81.6
unitig_899.g15633 Utricularia gibba HOM05D004417 ORTHO05D005528 0.0e+00 1201.0 1603 46.3
Gohir.A03G118200 Gossypium hirsutum HOM05D004417 ORTHO05D005528 1.7e-302 1043.5 645 80.0
Solyc05g016460.2 Solanum lycopersicum HOM05D004417 ORTHO05D005528 1.1e-258 897.9 631 70.8
arahy.Tifrunner.gnm1.ann1.W0X7A3 Arachis hypogaea HOM05D004417 ORTHO05D005528 9.6e-258 894.8 599 76.0
Cpa.g.sc2.220 Carica papaya HOM05D004417 ORTHO05D005528 2.0e-255 887.1 582 77.3
VMungo1215G0458 Vigna mungo HOM05D004417 ORTHO05D005528 8.7e-243 845.1 533 79.2
Nitab4.5_0000018g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 1.2e-239 834.7 590 71.9
Nitab4.5_0008542g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 1.7e-238 830.9 602 70.6
SHI04465 Sapria himalayana HOM05D004417 ORTHO05D005528 6.1e-236 822.4 651 66.2
Nitab4.5_0008542g0030 Nicotiana tabacum HOM05D004417 ORTHO05D005528 1.8e-216 757.7 500 75.4
BcaB07g32312 Brassica carinata HOM05D004417 ORTHO05D005528 1.4e-211 741.5 522 72.6
vmacro00394 Vaccinium macrocarpon HOM05D004417 ORTHO05D005528 2.9e-198 697.2 511 69.5
SHI04470 Sapria himalayana HOM05D004417 ORTHO05D005528 3.3e-197 693.7 640 58.1
VMungo1215G3220 Vigna mungo HOM05D004417 ORTHO05D005528 3.4e-194 683.7 509 69.5
Rhsim09G0063700 Rhododendron simsii HOM05D004417 ORTHO05D005528 4.4e-186 656.8 513 66.3
Haze_10919 Corylus avellana HOM05D004417 ORTHO05D005528 2.7e-183 647.5 414 80.2
arahy.Tifrunner.gnm1.ann1.LF64TX Arachis hypogaea HOM05D004417 ORTHO05D005528 4.9e-177 626.7 476 68.3
Actinidia25661 Actinidia chinensis HOM05D004417 ORTHO05D005528 5.6e-173 613.2 553 60.6
HPP92_024821 Vanilla planifolia HOM05D004417 ORTHO05D005528 6.2e-164 583.2 484 58.7
VMungo1215G0989 Vigna mungo HOM05D004417 ORTHO05D005528 3.2e-160 570.9 338 82.2
Haze_10916 Corylus avellana HOM05D004417 ORTHO05D005528 4.0e-155 553.9 366 78.7
Cpa.g.sc2.214 Carica papaya HOM05D004417 ORTHO05D005528 1.6e-143 515.4 325 82.8
Nitab4.5_0008542g0020 Nicotiana tabacum HOM05D004417 ORTHO05D005528 1.8e-126 458.8 319 71.8
Actinidia25662 Actinidia chinensis HOM05D004417 ORTHO05D005528 3.0e-126 458.0 292 80.5
Psat0ss9816g0080 Pisum sativum HOM05D004417 ORTHO05D005528 1.6e-119 435.6 388 59.5
CAN.G45.11 Capsicum annuum HOM05D004417 ORTHO05D005528 8.2e-116 423.3 317 67.5
SEGI_38026 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 2.6e-114 418.3 384 57.6
VMungo1215G1550 Vigna mungo HOM05D004417 ORTHO05D005528 4.2e-112 411.0 247 80.6
Nitab4.5_0005025g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 7.2e-112 410.2 316 66.5
SEGI_15839 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 1.2e-111 409.5 368 58.2
Psat0ss9816g0160 Pisum sativum HOM05D004417 ORTHO05D005528 1.0e-97 363.2 251 70.9
Psat2g053360 Pisum sativum HOM05D004417 ORTHO05D005528 3.7e-76 291.6 212 69.3
CiPaw.05G190600 Carya illinoinensis HOM05D004417 ORTHO05D005528 4.0e-70 271.6 160 81.9
Peaxi162Scf00376g00324 Petunia axillaris HOM05D004417 ORTHO05D005528 3.4e-69 268.5 162 77.8
PSO083G0001 Papaver somniferum HOM05D004417 ORTHO05D005528 4.4e-61 241.5 142 78.9
Potri.010G108350 Populus trichocarpa HOM05D004417 ORTHO05D005528 1.3e-60 240.0 142 82.4
SHI04469 Sapria himalayana HOM05D004417 ORTHO05D005528 5.6e-56 224.6 146 74.0
SEGI_21450 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 1.7e-49 203.0 209 55.5
Gorai.010G022100 Gossypium raimondii HOM05D004417 ORTHO05D003549 5.1e-49 201.4 129 78.3
Cpa.g.sc2.218 Carica papaya HOM05D004417 ORTHO05D005528 3.3e-48 198.7 119 82.4
Haze_10915 Corylus avellana HOM05D004417 ORTHO05D005528 2.5e-40 172.6 101 78.2
Hund24935 Selenicereus undatus HOM05D008000 ORTHO05D010275 5.6e-40 171.4 101 79.2
Gohir.A02G156900 Gossypium hirsutum HOM05D003153 ORTHO05D003549 4.8e-39 168.3 143 62.9
Gohir.A03G114800 Gossypium hirsutum HOM05D003153 ORTHO05D003549 4.8e-39 168.3 143 62.9
Gohir.D01G098050 Gossypium hirsutum HOM05D003153 ORTHO05D003549 4.8e-39 168.3 143 62.9
Gohir.D10G134850 Gossypium hirsutum HOM05D003153 ORTHO05D003549 4.8e-39 168.3 143 62.9
Gohir.D13G141401 Gossypium hirsutum HOM05D003153 ORTHO05D003549 4.8e-39 168.3 143 62.9
Gohir.D10G083766 Gossypium hirsutum HOM05D003153 ORTHO05D003549 6.2e-39 167.9 143 62.2
Nitab4.5_0008542g0040 Nicotiana tabacum HOM05D004417 ORTHO05D005528 3.1e-38 165.6 142 61.3
Gohir.D10G083700 Gossypium hirsutum HOM05D003153 ORTHO05D003549 4.0e-38 165.2 143 62.2
Gorai.011G113600 Gossypium raimondii HOM05D003153 ORTHO05D003549 9.0e-38 164.1 143 61.5
QL03p034878 Quercus lobata HOM05D004417 ORTHO05D005528 2.6e-37 162.5 93 79.6
CAN.G45.12 Capsicum annuum HOM05D004417 ORTHO05D005528 5.1e-33 148.3 100 67.0
Gohir.1Z049383 Gossypium hirsutum HOM05D003153 ORTHO05D003549 2.1e-31 142.9 130 60.0
Gohir.A13G139960 Gossypium hirsutum HOM05D003153 ORTHO05D003549 6.2e-31 141.4 130 59.2
Duzib084G1091 Durio zibethinus HOM05D004417 ORTHO05D005528 2.0e-29 136.3 84 75.0
Sopen03g014530 Solanum pennellii HOM05D004417 ORTHO05D005528 6.7e-25 121.3 91 64.8
Gorai.002G174000 Gossypium raimondii HOM05D004417 ORTHO05D000624 2.8e-23 115.9 91 64.8
Gohir.D01G141400 Gossypium hirsutum HOM05D004417 ORTHO05D000624 4.8e-23 115.2 91 63.7
HPP92_024820 Vanilla planifolia HOM05D004417 ORTHO05D005528 2.1e-18 99.8 108 58.3
Psat5g193520 Pisum sativum HOM05D001137 ORTHO05D001967 2.7e-18 99.4 74 60.8
HPP92_024819 Vanilla planifolia HOM05D004417 ORTHO05D005528 7.4e-16 91.3 82 59.8
Haze_10917 Corylus avellana HOM05D004417 ORTHO05D005528 4.8e-15 88.6 51 74.5
Psat1g176600 Pisum sativum HOM05D002927 ORTHO05D015040 6.3e-15 88.2 60 73.3
TWI77G0048 Tripterygium wilfordii HOM05D004417 ORTHO05D005528 8.2e-15 87.8 52 75.0
Lsat_1_v5_gn_1_113260 Lactuca sativa HOM05D005112 ORTHO05D006681 8.5e-12 77.8 58 65.5
Lsat_1_v5_gn_4_130540 Lactuca sativa HOM05D005112 ORTHO05D006681 1.2e-10 73.9 54 64.8
Migut.L00545 Erythranthe guttata HOM05D004417 ORTHO05D005528 1.8e-09 70.1 51 58.8
Psat7g192520 Pisum sativum HOM05D002736 ORTHO05D018191 1.5e-08 67.0 147 39.5
Cpa.g.sc2.221 Carica papaya HOM05D004417 ORTHO05D120462 4.3e-08 65.5 54 59.3


User provided reference genes

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