Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G0129 Cannabis sativa HOM05D003781 ORTHO05D004299 4.0e-199 698.0 374 100.0
Prupe.7G095100 Prunus persica HOM05D003781 ORTHO05D004299 2.3e-106 389.8 372 55.6
MD14G1038400 Malus domestica HOM05D003781 ORTHO05D004299 1.2e-105 387.5 366 61.5
QL04p046781 Quercus lobata HOM05D003781 ORTHO05D004299 6.4e-104 381.7 370 55.1
QL07p036815 Quercus lobata HOM05D003781 ORTHO05D004299 1.4e-103 380.6 370 55.1
RcHm_v2.0_Chr3g0475861 Rosa chinensis HOM05D003781 ORTHO05D004299 1.2e-102 377.5 366 55.2
RcHm_v2.0_Chr1g0331051 Rosa chinensis HOM05D003781 ORTHO05D004299 3.5e-102 375.9 366 55.2
Haze_20190 Corylus avellana HOM05D003781 ORTHO05D004299 6.0e-102 375.2 372 55.4
TWI74G1316 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 6.0e-102 375.2 369 53.4
MD12G1039800 Malus domestica HOM05D003781 ORTHO05D004299 2.3e-101 373.2 366 55.7
Manes.08G033100 Manihot esculenta HOM05D003781 ORTHO05D004299 3.0e-101 372.9 373 54.2
QL04p047257 Quercus lobata HOM05D003781 ORTHO05D004299 6.6e-101 371.7 370 54.3
Actinidia03891 Actinidia chinensis HOM05D003781 ORTHO05D004299 2.5e-100 369.8 368 53.8
Actinidia04001 Actinidia chinensis HOM05D003781 ORTHO05D004299 2.5e-100 369.8 368 53.8
Dinv12337 Davidia involucrata HOM05D003781 ORTHO05D004299 1.2e-99 367.5 372 54.0
Duzib093G1220 Durio zibethinus HOM05D003781 ORTHO05D004299 8.1e-99 364.8 364 52.7
FvH4_6g20270 Fragaria vesca HOM05D003781 ORTHO05D004299 6.8e-98 361.7 365 52.6
FAN14G3039 Fragaria x ananassa HOM05D003781 ORTHO05D004299 6.8e-98 361.7 365 52.6
Potri.016G070800 Populus trichocarpa HOM05D003781 ORTHO05D004299 8.9e-98 361.3 374 52.7
Sabra16G0070900 Salix brachista HOM05D003781 ORTHO05D004299 1.2e-97 360.9 377 52.8
Sabra16G0073100 Salix brachista HOM05D003781 ORTHO05D004299 1.2e-97 360.9 377 52.8
Dinv31756 Davidia involucrata HOM05D003781 ORTHO05D004299 1.5e-97 360.5 371 52.3
TWI53G0607 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 5.8e-97 358.6 369 51.5
TAR633G0070 Trochodendron aralioides HOM05D003781 ORTHO05D004299 2.2e-96 356.7 367 54.2
Gohir.D09G131000 Gossypium hirsutum HOM05D003781 ORTHO05D004299 1.9e-95 353.6 367 51.2
Gorai.006G149700 Gossypium raimondii HOM05D003781 ORTHO05D004299 1.9e-95 353.6 367 51.2
FAN02G2206 Fragaria x ananassa HOM05D003781 ORTHO05D004299 5.4e-95 352.1 365 51.5
Atru.chr8.1371 Acer truncatum HOM05D003781 ORTHO05D004299 7.1e-95 351.7 362 52.5
Cpa.g.sc10.172 Carica papaya HOM05D003781 ORTHO05D004299 9.2e-95 351.3 365 51.8
TAR636G1975 Trochodendron aralioides HOM05D003781 ORTHO05D004299 1.2e-94 350.9 370 51.6
Ciclev10012131m.g Citrus clementina HOM05D003781 ORTHO05D004299 2.1e-94 350.1 364 53.6
CiPaw.09G020700 Carya illinoinensis HOM05D003781 ORTHO05D004299 6.0e-94 348.6 374 52.1
GSVIVG01037869001 Vitis vinifera HOM05D003781 ORTHO05D004299 6.0e-94 348.6 325 56.9
GSVIVG01029568001 Vitis vinifera HOM05D003781 ORTHO05D004299 1.3e-93 347.4 377 50.1
FAN05G1631 Fragaria x ananassa HOM05D003781 ORTHO05D004299 2.3e-93 346.7 396 48.2
FAN05G5379 Fragaria x ananassa HOM05D003781 ORTHO05D004299 2.3e-93 346.7 396 48.2
Lalb_Chr18g0056351 Lupinus albus HOM05D003781 ORTHO05D004299 3.0e-93 346.3 365 51.5
FAN09G0267 Fragaria x ananassa HOM05D003781 ORTHO05D004299 5.1e-93 345.5 396 48.2
Thecc.05G103800 Theobroma cacao HOM05D003781 ORTHO05D004299 8.7e-93 344.7 369 52.0
Haze_19697 Corylus avellana HOM05D003781 ORTHO05D004299 1.6e-91 340.5 361 53.5
MELO3C009536.2 Cucumis melo HOM05D003781 ORTHO05D004299 2.1e-91 340.1 368 50.3
Lj1g0015362 Lotus japonicus HOM05D003781 ORTHO05D004299 2.8e-91 339.7 365 50.1
CsaV3_3G037920 Cucumis sativus L. HOM05D003781 ORTHO05D004299 3.6e-91 339.3 368 50.3
PGR142G3230 Punica granatum HOM05D003781 ORTHO05D004299 3.1e-90 336.3 373 51.5
arahy.Tifrunner.gnm1.ann1.WYX60D Arachis hypogaea HOM05D003781 ORTHO05D004299 4.0e-90 335.9 367 55.9
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 2.6e-89 333.2 331 53.2
ECA248G2654 Erigeron canadensis HOM05D003781 ORTHO05D004299 4.4e-89 332.4 375 48.0
arahy.Tifrunner.gnm1.ann1.GQX3NW Arachis hypogaea HOM05D003781 ORTHO05D004299 2.2e-88 330.1 366 54.9
vmacro07475 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 3.8e-88 329.3 366 49.2
PGR142G3605 Punica granatum HOM05D003781 ORTHO05D004299 8.4e-88 328.2 364 49.2
Nn2g14295 Nelumbo nucifera HOM05D003781 ORTHO05D004299 1.1e-87 327.8 371 48.2
Cc06_g06510 Coffea canephora HOM05D003781 ORTHO05D004299 1.4e-87 327.4 362 49.2
CiPaw.10G017000 Carya illinoinensis HOM05D003781 ORTHO05D004299 1.9e-87 327.0 299 58.9
AUR62036398 Chenopodium quinoa HOM05D003781 ORTHO05D004299 7.1e-87 325.1 300 55.0
HanXRQChr01g0025751 Helianthus annuus HOM05D003781 ORTHO05D004299 7.1e-87 325.1 365 48.2
Lsat_1_v5_gn_6_113040 Lactuca sativa HOM05D003781 ORTHO05D004299 9.3e-87 324.7 377 49.9
DCAR_009179 Daucus carota HOM05D003781 ORTHO05D004299 1.2e-86 324.3 367 48.8
Peaxi162Scf00586g00012 Petunia axillaris HOM05D003781 ORTHO05D004299 1.6e-86 323.9 374 49.5
Phvul.001G195300 Phaseolus vulgaris HOM05D003781 ORTHO05D004299 2.1e-86 323.6 362 47.2
Glyma.19G200100 Glycine max HOM05D003781 ORTHO05D004299 3.5e-86 322.8 362 48.1
Sopen01g003140 Solanum pennellii HOM05D003781 ORTHO05D004299 6.0e-86 322.0 368 48.1
Lsat_1_v5_gn_1_58161 Lactuca sativa HOM05D003781 ORTHO05D004299 7.8e-86 321.6 364 50.0
Glyma.19G199100 Glycine max HOM05D003781 ORTHO05D004299 1.7e-85 320.5 362 47.8
Solyc01g007160.4 Solanum lycopersicum HOM05D003781 ORTHO05D004299 2.3e-85 320.1 375 48.0
VMungo1383G2961 Vigna mungo HOM05D003781 ORTHO05D004299 5.1e-85 318.9 355 46.8
VMungo0464G1804 Vigna mungo HOM05D003781 ORTHO05D004299 3.3e-84 316.2 362 46.4
Ca_17838_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 4.3e-84 315.8 364 48.4
Medtr0036s0040 Medicago truncatula HOM05D003781 ORTHO05D004299 4.3e-84 315.8 364 48.1
Actinidia31110 Actinidia chinensis HOM05D003781 ORTHO05D004299 7.3e-84 315.1 288 54.9
AUR62030753 Chenopodium quinoa HOM05D003781 ORTHO05D004299 1.3e-83 314.3 381 46.2
THA.LOC104809956 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 1.6e-83 313.9 367 48.5
CAN.G170.93 Capsicum annuum HOM05D003781 ORTHO05D004299 8.1e-83 311.6 363 47.1
HanXRQChr16g0532941 Helianthus annuus HOM05D003781 ORTHO05D004299 8.1e-83 311.6 269 56.9
Hma1.2p1_0064F.1_g034690 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 1.1e-82 311.2 339 51.6
Ca_03587_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 1.4e-82 310.8 365 47.9
Sed0000357 Sechium edule HOM05D003781 ORTHO05D004299 1.4e-82 310.8 297 54.5
PGSC0003DMG400021351 Solanum tuberosum HOM05D003781 ORTHO05D004299 2.4e-82 310.1 369 46.6
Hund10883 Selenicereus undatus HOM05D003781 ORTHO05D004299 3.1e-82 309.7 277 53.8
EL10Ac5g12476 Beta vulgaris HOM05D003781 ORTHO05D004299 2.0e-81 307.0 284 54.9
Psat5g299360 Pisum sativum HOM05D003781 ORTHO05D004299 3.4e-81 306.2 368 49.2
Solyc01g110330.3 Solanum lycopersicum HOM05D003781 ORTHO05D004299 4.5e-81 305.8 275 54.9
Sed0026509 Sechium edule HOM05D003781 ORTHO05D004299 9.9e-81 304.7 365 46.8
Aqoxy1G00670 Aquilegia oxysepala HOM05D003781 ORTHO05D004299 1.3e-80 304.3 377 46.4
Sopen01g052480 Solanum pennellii HOM05D003781 ORTHO05D004299 2.2e-80 303.5 363 47.1
Nitab4.5_0001122g0140 Nicotiana tabacum HOM05D003781 ORTHO05D004299 2.9e-80 303.1 372 46.8
Oeu052621.2 Olea europaea HOM05D003781 ORTHO05D004299 1.9e-79 300.4 268 54.9
Medtr2g102470 Medicago truncatula HOM05D003781 ORTHO05D004299 4.2e-79 299.3 364 48.1
Oeu034092.2 Olea europaea HOM05D003781 ORTHO05D004299 4.2e-79 299.3 364 48.1
ClCG10G018370 Citrullus lanatus HOM05D003781 ORTHO05D004299 1.2e-78 297.7 326 50.3
MSTRG.5897 Avicennia marina HOM05D003781 ORTHO05D004299 2.1e-78 297.0 367 47.1
Migut.J00706 Erythranthe guttata HOM05D003781 ORTHO05D004299 2.7e-78 296.6 362 47.5
Thhalv10027115m.g Eutrema salsugineum HOM05D003781 ORTHO05D004299 2.7e-78 296.6 366 46.4
Hma1.2p1_0381F.1_g140000 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 3.5e-78 296.2 368 48.1
MBI04_g47396_MAGBIO Magnolia biondii HOM05D003781 ORTHO05D004299 7.9e-78 295.0 382 46.1
Nitab4.5_0000020g0070 Nicotiana tabacum HOM05D003781 ORTHO05D004299 1.3e-77 294.3 368 46.2
Eucgr.K02618 Eucalyptus grandis HOM05D003781 ORTHO05D004299 1.8e-77 293.9 289 52.6
CSS0048701 Camellia sinensis var. sinensis HOM05D003781 ORTHO05D004299 3.9e-77 292.7 287 53.0
Ah.04g152350 Amaranthus hybridus HOM05D003781 ORTHO05D000148 5.1e-77 292.4 363 45.7
MBI04_g43653_MAGBIO Magnolia biondii HOM05D003781 ORTHO05D004299 2.5e-76 290.0 377 45.6
BolC7t46313H Brassica oleracea HOM05D003781 ORTHO05D004299 4.3e-76 289.3 369 46.3
A08p18640 Brassica napus HOM05D003781 ORTHO05D004299 5.6e-76 288.9 367 45.5
Sp7g29260 Schrenkiella parvula HOM05D003781 ORTHO05D004299 9.6e-76 288.1 367 45.2
BcaNung04576 Brassica carinata HOM05D003781 ORTHO05D004299 1.6e-75 287.3 368 45.9
C07p58580 Brassica napus HOM05D003781 ORTHO05D004299 1.6e-75 287.3 367 45.0
Lj2A35G43 Lonicera japonica HOM05D003781 ORTHO05D004299 2.1e-75 287.0 272 55.1
A03p60680 Brassica napus HOM05D003781 ORTHO05D004299 4.8e-75 285.8 367 45.0
PSO541G6247 Papaver somniferum HOM05D003781 ORTHO05D004299 1.4e-74 284.3 364 45.1
PSO675G8110 Papaver somniferum HOM05D003781 ORTHO05D004299 5.3e-74 282.3 370 44.9
AT4G31400 Arabidopsis thaliana HOM05D003781 ORTHO05D004299 1.5e-73 280.8 371 43.9
CARHR239280 Cardamine hirsuta HOM05D003781 ORTHO05D004299 1.5e-73 280.8 372 46.5
Carub.0007s0916 Capsella rubella HOM05D003781 ORTHO05D004299 2.0e-73 280.4 365 48.2
BraA03t15109Z Brassica rapa HOM05D003781 ORTHO05D004299 4.5e-73 279.3 367 44.4
Rhsim09G0141200 Rhododendron simsii HOM05D003781 ORTHO05D004299 4.5e-73 279.3 356 46.1
BraA08t33827Z Brassica rapa HOM05D003781 ORTHO05D004299 7.6e-73 278.5 370 44.3
Aa31LG2G18950 Aethionema arabicum HOM05D003781 ORTHO05D004299 9.9e-73 278.1 365 44.1
SGA_v2.0_scaffold13G06629 Striga asiatica HOM05D003781 ORTHO05D004299 4.9e-72 275.8 318 47.8
unitig_26.g10109 Utricularia gibba HOM05D003781 ORTHO05D004299 1.9e-71 273.9 365 45.2
Rhsim03G0064900 Rhododendron simsii HOM05D003781 ORTHO05D004299 7.1e-71 271.9 367 44.7
TPR.G37223 Trifolium pratense HOM05D003781 ORTHO05D004299 9.3e-71 271.6 324 45.7
C03p88000 Brassica napus HOM05D003781 ORTHO05D004299 1.0e-69 268.1 270 50.7
SalBow8G0162 Salvia bowleyana HOM05D003781 ORTHO05D004299 3.9e-69 266.2 302 48.7
RhsimUnG0138100 Rhododendron simsii HOM05D003781 ORTHO05D004299 1.9e-68 263.8 313 48.9
CDE06G0061 Ceratophyllum demersum HOM05D003781 ORTHO05D004299 2.8e-67 260.0 382 42.1
CDE08G1154 Ceratophyllum demersum HOM05D003781 ORTHO05D004299 1.4e-66 257.7 287 46.7
vmacro10320 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 4.5e-65 252.7 242 53.3
ATR0772G111 Amborella trichopoda HOM05D003781 ORTHO05D004299 7.6e-65 251.9 378 41.8
Gohir.A09G134500 Gossypium hirsutum HOM05D003781 ORTHO05D004299 3.8e-64 249.6 367 42.5
CSS0029856 Camellia sinensis var. sinensis HOM05D003781 ORTHO05D004299 6.5e-64 248.8 246 52.0
Os04g0498900 Oryza sativa ssp. japonica HOM05D003781 ORTHO05D004299 6.5e-64 248.8 274 51.8
BolC3t21111H Brassica oleracea HOM05D003781 ORTHO05D004299 8.4e-64 248.4 272 50.7
AL7G20660 Arabidopsis lyrata HOM05D003781 ORTHO05D004299 1.9e-63 247.3 324 44.1
Lj1A1051T45 Lonicera japonica HOM05D003781 ORTHO05D004299 2.1e-62 243.8 246 52.0
Zm00001eb078390 Zea mays HOM05D003781 ORTHO05D004299 1.8e-61 240.7 272 48.5
Zm00001eb078410 Zea mays HOM05D003781 ORTHO05D004299 1.8e-61 240.7 272 48.5
Zm00001eb078400 Zea mays HOM05D003781 ORTHO05D004299 2.3e-61 240.4 272 48.5
HPP92_023079 Vanilla planifolia HOM05D003781 ORTHO05D004299 5.1e-61 239.2 377 41.9
BcaB03g12691 Brassica carinata HOM05D003781 ORTHO05D004299 5.7e-60 235.7 323 42.1
PSO675G6385 Papaver somniferum HOM05D003781 ORTHO05D004299 8.2e-59 231.9 278 46.4
BcaC01g01091 Brassica carinata HOM05D003781 ORTHO05D004299 7.7e-57 225.3 227 50.2
Nitab4.5_0002858g0040 Nicotiana tabacum HOM05D003781 ORTHO05D004299 1.0e-56 224.9 329 42.6
SEGI_09697 Sequoiadendron giganteum HOM05D003781 ORTHO05D004299 5.0e-56 222.6 406 35.0
Nitab4.5_0008187g0010 Nicotiana tabacum HOM05D003781 ORTHO05D004299 3.3e-52 209.9 362 39.0
Pp3c11_11100 Physcomitrium patens HOM05D003781 ORTHO05D004299 4.1e-50 203.0 336 38.7
Cc02_g09440 Coffea canephora HOM05D003781 ORTHO05D004299 1.0e-48 198.4 266 44.0
THA.LOC104816619 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 1.7e-48 197.6 217 50.7
AUR62040627 Chenopodium quinoa HOM05D003781 ORTHO05D004299 1.6e-46 191.0 151 58.9
BcaNung01523 Brassica carinata HOM05D003781 ORTHO05D004299 4.4e-44 183.0 325 38.8
RhsimUnG0138400 Rhododendron simsii HOM05D003781 ORTHO05D004299 7.0e-42 175.6 184 51.6
ATR1127G225 Amborella trichopoda HOM05D003781 ORTHO05D004299 1.3e-40 171.4 327 36.4
SMO367G1200 Selaginella moellendorffii HOM05D003781 ORTHO05D004299 8.5e-40 168.7 328 35.7
Sc07g0006420 Simmondsia chinensis HOM05D003781 ORTHO05D004299 2.3e-37 160.6 215 42.8
HanXRQChr03g0072391 Helianthus annuus HOM05D003781 ORTHO05D004299 3.1e-34 150.2 197 43.1
AagrBONN_evm.TU.Sc2ySwM_228.4048 Anthoceros agrestis HOM05D003781 ORTHO05D004299 5.3e-34 149.4 450 27.3
HanXRQChr15g0472861 Helianthus annuus HOM05D003781 ORTHO05D004299 7.0e-34 149.1 135 53.3
SMO343G0088 Selaginella moellendorffii HOM05D003781 ORTHO05D004299 3.8e-32 143.3 251 35.5
Mapoly0033s0057 Marchantia polymorpha HOM05D003781 ORTHO05D004299 1.2e-30 138.3 283 36.4
ATR0772G001 Amborella trichopoda HOM05D003781 ORTHO05D004299 1.4e-29 134.8 161 46.0
Actinidia06046 Actinidia chinensis HOM05D003781 ORTHO05D004299 2.8e-27 127.1 163 48.5
TPR.G33838 Trifolium pratense HOM05D003781 ORTHO05D004299 3.7e-27 126.7 158 46.8
MD10G1054000 Malus domestica HOM05D003781 ORTHO05D004299 5.3e-26 122.9 148 58.8
QL07p036300 Quercus lobata HOM05D001729 ORTHO05D001155 3.5e-25 120.2 204 38.2
SGA_v2.0_scaffold31G12848 Striga asiatica HOM05D003781 ORTHO05D004299 5.9e-25 119.4 210 41.4
AL1G32760 Arabidopsis lyrata HOM05D003781 ORTHO05D004299 4.7e-22 109.8 152 42.8
EL10Ac6g14086 Beta vulgaris HOM05D003781 ORTHO05D004299 6.8e-21 105.9 85 51.8
Lsat_1_v5_gn_1_27721 Lactuca sativa HOM05D003781 ORTHO05D004299 1.6e-17 94.7 105 43.8
TAR629G3109 Trochodendron aralioides HOM05D003781 ORTHO05D004299 2.7e-17 94.0 104 46.2
Gorai.005G179000 Gossypium raimondii HOM05D003781 ORTHO05D004299 1.9e-15 87.8 89 51.7
CBR_g51231 Chara braunii HOM05D003781 ORTHO05D004299 2.8e-14 84.0 183 31.1
Gohir.D04G105401 Gossypium hirsutum HOM05D003781 ORTHO05D004299 2.8e-14 84.0 89 49.4
MCO12G060 Micromonas commoda HOM05D003781 ORTHO05D004299 4.7e-14 83.2 367 24.5
CBR_g53498 Chara braunii HOM05D003781 ORTHO05D004299 4.0e-13 80.1 114 40.4
TPR.G742 Trifolium pratense HOM05D003781 ORTHO05D004299 3.4e-12 77.0 86 46.5
SGA_v2.0_scaffold522G52710 Striga asiatica HOM05D003781 ORTHO05D004299 1.3e-11 75.1 113 38.1
CBR_g53714 Chara braunii HOM05D003781 ORTHO05D004299 1.4e-10 71.6 222 28.8
Cfa017313 Carpinus fangiana HOM05D003781 ORTHO05D004299 3.9e-08 63.5 43 65.1
Cre12.g542400 Chlamydomonas reinhardtii HOM05D003781 ORTHO05D004299 5.0e-08 63.2 98 36.7
TPR.G38290 Trifolium pratense HOM05D010769 ORTHO05D011972 1.1e-07 62.0 55 50.9
TPR.G165 Trifolium pratense HOM05D003781 ORTHO05D004299 2.5e-07 60.8 56 50.0
TAR626G1654 Trochodendron aralioides HOM05D004538 ORTHO05D006068 8.0e-06 55.8 52 53.8


User provided reference genes

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