Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G0127 Cannabis sativa HOM05D004519 ORTHO05D006283 1.0e-229 799.7 399 100.0
FvH4_5g23060 Fragaria vesca HOM05D004519 ORTHO05D006283 4.5e-172 608.2 365 80.3
FAN18G3814 Fragaria x ananassa HOM05D004519 ORTHO05D006283 4.5e-172 608.2 365 80.3
RcHm_v2.0_Chr7g0211781 Rosa chinensis HOM05D004519 ORTHO05D006283 4.5e-172 608.2 367 79.8
Cfa012505 Carpinus fangiana HOM05D004519 ORTHO05D006283 2.9e-171 605.5 370 78.6
GSVIVG01013060001 Vitis vinifera HOM05D004519 ORTHO05D006283 2.9e-171 605.5 355 82.0
FAN04G1490 Fragaria x ananassa HOM05D004519 ORTHO05D006283 6.5e-171 604.4 365 79.7
FAN13G3061 Fragaria x ananassa HOM05D004519 ORTHO05D006283 1.9e-170 602.8 355 81.7
MD06G1026700 Malus domestica HOM05D004519 ORTHO05D006283 9.3e-170 600.5 367 78.5
CiPaw.11G098500 Carya illinoinensis HOM05D004519 ORTHO05D006283 1.0e-168 597.0 365 78.9
FAN18G1908 Fragaria x ananassa HOM05D004519 ORTHO05D006283 1.8e-168 596.3 381 76.6
MD16G1279400 Malus domestica HOM05D004519 ORTHO05D006283 3.0e-168 595.5 367 78.2
CiPaw.12G068400 Carya illinoinensis HOM05D004519 ORTHO05D006283 3.9e-168 595.1 365 78.6
Ciclev10001047m.g Citrus clementina HOM05D004519 ORTHO05D006283 1.9e-167 592.8 365 75.6
Potri.001G136600 Populus trichocarpa HOM05D004519 ORTHO05D006283 1.2e-164 583.6 392 73.2
CSS0024637 Camellia sinensis var. sinensis HOM05D004519 ORTHO05D006283 2.6e-164 582.4 367 75.2
Sc01g0007150 Simmondsia chinensis HOM05D004519 ORTHO05D006283 7.7e-164 580.9 391 71.9
TAR629G2035 Trochodendron aralioides HOM05D004519 ORTHO05D006283 2.9e-163 578.9 399 71.4
Dinv29004 Davidia involucrata HOM05D004519 ORTHO05D006283 6.5e-163 577.8 367 76.0
PGR042G1943 Punica granatum HOM05D004519 ORTHO05D006283 8.5e-163 577.4 390 69.7
Nn1g00218 Nelumbo nucifera HOM05D004519 ORTHO05D006283 1.1e-162 577.0 365 74.0
Glyma.09G207900 Glycine max HOM05D004519 ORTHO05D006283 2.1e-161 572.8 392 71.2
Gorai.004G182200 Gossypium raimondii HOM05D004519 ORTHO05D006283 2.1e-161 572.8 367 74.4
Eucgr.E00228 Eucalyptus grandis HOM05D004519 ORTHO05D006283 7.9e-161 570.9 368 73.4
Gohir.A11G028600 Gossypium hirsutum HOM05D004519 ORTHO05D006283 1.4e-160 570.1 391 72.1
Nn3g19385 Nelumbo nucifera HOM05D004519 ORTHO05D006283 1.8e-160 569.7 365 73.2
Dinv25262 Davidia involucrata HOM05D004519 ORTHO05D006283 2.3e-160 569.3 388 71.4
Hma1.2p1_1569F.1_g291200 Hydrangea macrophylla HOM05D004519 ORTHO05D006283 2.3e-160 569.3 367 75.5
Lj4g0001331 Lotus japonicus HOM05D004519 ORTHO05D006283 2.3e-160 569.3 369 73.7
Glyma.01G014200 Glycine max HOM05D004519 ORTHO05D006283 3.0e-160 568.9 392 70.9
Gorai.007G033500 Gossypium raimondii HOM05D004519 ORTHO05D006283 3.9e-160 568.5 356 76.7
PSO063G4347 Papaver somniferum HOM05D004519 ORTHO05D006283 6.7e-160 567.8 356 73.6
PSO782G3212 Papaver somniferum HOM05D004519 ORTHO05D006283 2.5e-159 565.8 356 73.3
CsaV3_3G048840 Cucumis sativus L. HOM05D004519 ORTHO05D006283 3.3e-159 565.5 365 72.9
Manes.17G018849 Manihot esculenta HOM05D004519 ORTHO05D006283 2.2e-158 562.8 356 75.0
Lalb_Chr09g0325481 Lupinus albus HOM05D004519 ORTHO05D006283 3.7e-158 562.0 369 73.4
Gohir.D11G030600 Gossypium hirsutum HOM05D004519 ORTHO05D006283 8.2e-158 560.8 391 70.6
Oeu027094.2 Olea europaea HOM05D004519 ORTHO05D006283 8.2e-158 560.8 366 74.0
Lalb_Chr16g0381061 Lupinus albus HOM05D004519 ORTHO05D006283 1.1e-157 560.5 369 73.2
Cc08_g03490 Coffea canephora HOM05D004519 ORTHO05D006283 1.4e-157 560.1 369 74.3
Migut.E00743 Erythranthe guttata HOM05D004519 ORTHO05D006283 1.4e-157 560.1 353 74.8
VMungo1215G0394 Vigna mungo HOM05D004519 ORTHO05D006283 3.1e-157 558.9 367 73.0
CSS0001538 Camellia sinensis var. sinensis HOM05D004519 ORTHO05D006283 4.1e-157 558.5 334 78.7
MELO3C003440.2 Cucumis melo HOM05D004519 ORTHO05D006283 5.3e-157 558.1 365 72.6
Aqoxy3G02176 Aquilegia oxysepala HOM05D004519 ORTHO05D006283 1.5e-156 556.6 365 71.8
Gohir.A03G000032 Gossypium hirsutum HOM05D004519 ORTHO05D006283 3.4e-156 555.4 356 75.0
SGA_v2.0_scaffold198G41070 Striga asiatica HOM05D004519 ORTHO05D006283 5.9e-156 554.7 389 68.4
Sed0022223 Sechium edule HOM05D004519 ORTHO05D006283 1.3e-155 553.5 391 68.5
TPR.G19434 Trifolium pratense HOM05D004519 ORTHO05D006283 1.7e-155 553.1 374 70.6
Medtr5g029230 Medicago truncatula HOM05D004519 ORTHO05D006283 2.9e-155 552.4 367 71.7
Psat2g139000 Pisum sativum HOM05D004519 ORTHO05D006283 5.0e-155 551.6 383 69.2
Phvul.002G136600 Phaseolus vulgaris HOM05D004519 ORTHO05D006283 6.5e-155 551.2 367 71.7
Duzib205G0301 Durio zibethinus HOM05D004519 ORTHO05D006283 2.5e-154 549.3 350 75.7
Gorai.003G185500 Gossypium raimondii HOM05D004519 ORTHO05D006283 3.2e-154 548.9 356 74.2
THA.LOC104812759 Tarenaya hassleriana HOM05D004519 ORTHO05D006283 3.2e-154 548.9 366 72.1
Solyc08g076470.4 Solanum lycopersicum HOM05D004519 ORTHO05D006283 4.2e-154 548.5 354 73.2
Sopen08g025050 Solanum pennellii HOM05D004519 ORTHO05D006283 4.2e-154 548.5 354 73.4
MSTRG.24848 Avicennia marina HOM05D004519 ORTHO05D006283 7.2e-154 547.7 354 73.4
CAN.G726.25 Capsicum annuum HOM05D004519 ORTHO05D006283 1.6e-153 546.6 397 67.0
THA.LOC104814413 Tarenaya hassleriana HOM05D004519 ORTHO05D006283 1.4e-152 543.5 365 71.2
Nitab4.5_0000529g0120 Nicotiana tabacum HOM05D004519 ORTHO05D006283 1.8e-152 543.1 354 73.7
QL12p001672 Quercus lobata HOM05D004519 ORTHO05D006283 2.3e-152 542.7 488 57.8
HanXRQChr03g0083251 Helianthus annuus HOM05D004519 ORTHO05D006283 5.1e-152 541.6 353 72.0
Ca_25177_v3 Cicer arietinum L. HOM05D004519 ORTHO05D006283 6.7e-152 541.2 359 71.6
Prupe.5G027200 Prunus persica HOM05D004519 ORTHO05D006283 2.6e-151 539.3 367 72.5
Aa31LG2G13810 Aethionema arabicum HOM05D004519 ORTHO05D006283 3.3e-151 538.9 356 71.3
Sabra01G0105700 Salix brachista HOM05D004519 ORTHO05D006283 7.4e-151 537.7 434 63.1
HanXRQChr13g0414231 Helianthus annuus HOM05D004519 ORTHO05D006283 1.3e-150 537.0 352 71.3
MBI04_g32203_MAGBIO Magnolia biondii HOM05D004519 ORTHO05D006283 1.7e-150 536.6 394 66.5
Os10g0577900 Oryza sativa ssp. japonica HOM05D004519 ORTHO05D006283 2.2e-150 536.2 354 70.1
ATR0829G164 Amborella trichopoda HOM05D004519 ORTHO05D006283 1.8e-149 533.1 353 71.7
ClCG09G011630 Citrullus lanatus HOM05D004519 ORTHO05D006283 5.3e-149 531.6 372 69.4
Carub.0001s3053 Capsella rubella HOM05D004519 ORTHO05D006283 9.1e-149 530.8 356 69.9
Thhalv10007540m.g Eutrema salsugineum HOM05D004519 ORTHO05D006283 1.2e-148 530.4 356 70.2
BcaB03g13753 Brassica carinata HOM05D004519 ORTHO05D006283 1.5e-148 530.0 367 68.9
BcaC05g27905 Brassica carinata HOM05D004519 ORTHO05D006283 1.5e-148 530.0 367 68.7
AT1G32200 Arabidopsis thaliana HOM05D004519 ORTHO05D006283 2.0e-148 529.6 382 67.0
Sp1g27880 Schrenkiella parvula HOM05D004519 ORTHO05D006283 2.6e-148 529.3 356 70.2
AL1G46330 Arabidopsis lyrata HOM05D004519 ORTHO05D006283 4.5e-148 528.5 356 69.9
A05p25130 Brassica napus HOM05D004519 ORTHO05D006283 4.5e-148 528.5 393 64.6
BraA05t21393Z Brassica rapa HOM05D004519 ORTHO05D006283 4.5e-148 528.5 393 64.6
ECA240G3299 Erigeron canadensis HOM05D004519 ORTHO05D006283 4.5e-148 528.5 353 69.4
AUR62018641 Chenopodium quinoa HOM05D004519 ORTHO05D006283 2.2e-147 526.2 355 70.7
BcaB07g32892 Brassica carinata HOM05D004519 ORTHO05D006283 3.8e-147 525.4 367 67.6
C05p31600 Brassica napus HOM05D004519 ORTHO05D006283 6.5e-147 524.6 367 68.1
BolC5t31883H Brassica oleracea HOM05D004519 ORTHO05D006283 6.5e-147 524.6 367 68.1
Zm00001eb025080 Zea mays HOM05D004519 ORTHO05D006283 6.5e-147 524.6 354 68.4
Gohir.D03G176300 Gossypium hirsutum HOM05D004519 ORTHO05D006283 8.5e-147 524.2 334 75.1
Lsat_1_v5_gn_6_80100 Lactuca sativa HOM05D004519 ORTHO05D006283 8.5e-147 524.2 353 69.1
Zm00001eb224960 Zea mays HOM05D004519 ORTHO05D006283 1.9e-146 523.1 354 67.8
BcaC05g27251 Brassica carinata HOM05D004519 ORTHO05D006283 4.2e-146 521.9 367 68.1
A09p34000 Brassica napus HOM05D004519 ORTHO05D006283 4.2e-146 521.9 367 67.8
AUR62007353 Chenopodium quinoa HOM05D004519 ORTHO05D006283 7.2e-146 521.2 399 64.2
CARHR031570 Cardamine hirsuta HOM05D004519 ORTHO05D006283 1.2e-145 520.4 356 69.9
SEGI_02196 Sequoiadendron giganteum HOM05D004519 ORTHO05D006283 4.7e-145 518.5 359 68.8
BcaB04g17996 Brassica carinata HOM05D004519 ORTHO05D006283 6.1e-145 518.1 365 67.7
BcaC07g37628 Brassica carinata HOM05D004519 ORTHO05D006283 3.9e-144 515.4 365 67.7
BolC8t47999H Brassica oleracea HOM05D004519 ORTHO05D006283 5.2e-144 515.0 365 67.7
A08p09320 Brassica napus HOM05D004519 ORTHO05D006283 9.7e-143 510.8 365 67.1
BraA08t32930Z Brassica rapa HOM05D004519 ORTHO05D006283 9.7e-143 510.8 365 67.1
DCAR_008221 Daucus carota HOM05D004519 ORTHO05D006283 1.8e-141 506.5 372 67.7
arahy.Tifrunner.gnm1.ann1.BI8WMI Arachis hypogaea HOM05D004519 ORTHO05D006283 5.9e-140 501.5 360 68.3
arahy.Tifrunner.gnm1.ann1.D9NVDI Arachis hypogaea HOM05D004519 ORTHO05D006283 5.9e-140 501.5 360 68.3
Rhsim11G0021900 Rhododendron simsii HOM05D004519 ORTHO05D006283 2.2e-139 499.6 353 69.7
vmacro00276 Vaccinium macrocarpon HOM05D004519 ORTHO05D006283 3.8e-139 498.8 330 73.0
CDE12G0245 Ceratophyllum demersum HOM05D004519 ORTHO05D006283 8.5e-139 497.7 343 69.1
Lj2A231G41 Lonicera japonica HOM05D004519 ORTHO05D006283 1.6e-137 493.4 380 66.1
Thecc.03G310400 Theobroma cacao HOM05D004519 ORTHO05D006283 8.0e-137 491.1 391 63.7
Duzib068G1409 Durio zibethinus HOM05D004519 ORTHO05D006283 3.0e-136 489.2 356 69.1
C05p39140 Brassica napus HOM05D004519 ORTHO05D006283 1.5e-135 486.9 328 69.8
BraA09t38946Z Brassica rapa HOM05D004519 ORTHO05D006283 2.9e-131 472.6 367 63.8
Gohir.D08G174500 Gossypium hirsutum HOM05D004519 ORTHO05D006283 8.5e-131 471.1 299 73.6
Haze_08164 Corylus avellana HOM05D004519 ORTHO05D006283 2.5e-130 469.5 340 68.5
FAN08G3243 Fragaria x ananassa HOM05D004519 ORTHO05D006283 4.2e-130 468.8 321 72.0
Gohir.A08G153600 Gossypium hirsutum HOM05D004519 ORTHO05D006283 5.5e-130 468.4 299 73.6
unitig_32.g10899 Utricularia gibba HOM05D004519 ORTHO05D006283 1.2e-129 467.2 311 69.5
Nitab4.5_0012493g0010 Nicotiana tabacum HOM05D004519 ORTHO05D006283 1.6e-129 466.8 305 74.4
EL10Ac5g12013 Beta vulgaris HOM05D004519 ORTHO05D006283 9.8e-127 457.6 374 59.1
CDE04G2515 Ceratophyllum demersum HOM05D004519 ORTHO05D006283 1.7e-126 456.8 347 64.0
Mapoly0045s0098 Marchantia polymorpha HOM05D004519 ORTHO05D006283 2.8e-126 456.1 354 58.5
Peaxi162Scf00170g00818 Petunia axillaris HOM05D004519 ORTHO05D006283 7.7e-124 448.0 354 63.8
SMO244G0022 Selaginella moellendorffii HOM05D004519 ORTHO05D006283 1.9e-122 443.4 354 57.3
HPP92_020895 Vanilla planifolia HOM05D004519 ORTHO05D006283 1.0e-120 437.6 282 72.0
Pp3c7_2970 Physcomitrium patens HOM05D004519 ORTHO05D006283 2.2e-118 429.9 354 55.4
HanXRQChr06g0172791 Helianthus annuus HOM05D004519 ORTHO05D006283 1.4e-117 427.2 355 60.8
AagrBONN_evm.TU.Sc2ySwM_117.1032 Anthoceros agrestis HOM05D004547 ORTHO05D005133 6.6e-115 418.3 356 57.6
EL10Ac5g12011 Beta vulgaris HOM05D004519 ORTHO05D006283 3.3e-114 416.0 374 55.3
Actinidia01317 Actinidia chinensis HOM05D004519 ORTHO05D006283 1.8e-112 410.2 275 72.4
CBR_g4494 Chara braunii HOM05D004519 ORTHO05D006283 7.8e-108 394.8 366 52.7
Eucgr.E01634 Eucalyptus grandis HOM05D004519 ORTHO05D006283 2.8e-105 386.3 249 72.7
DCAR_004271 Daucus carota HOM05D004519 ORTHO05D006283 1.2e-103 380.9 247 72.5
Cpa.g.sc208.3 Carica papaya HOM05D004519 ORTHO05D006283 1.5e-103 380.6 217 81.6
Haze_08160 Corylus avellana HOM05D004519 ORTHO05D006283 1.7e-102 377.1 256 73.0
Atru.chr6.1525 Acer truncatum HOM05D004519 ORTHO05D006283 3.1e-96 356.3 206 79.6
Cre02.g143000 Chlamydomonas reinhardtii HOM05D004519 ORTHO05D006283 1.8e-80 303.9 368 42.4
Actinidia29340 Actinidia chinensis HOM05D004519 ORTHO05D006283 3.1e-72 276.6 177 74.0
PRCOL_00006772 Prasinoderma coloniale HOM05D004519 ORTHO05D006283 2.8e-65 253.4 367 39.2
MCO03G317 Micromonas commoda HOM05D004519 ORTHO05D006283 1.1e-61 241.5 321 43.9
Hma1.2p1_3246F.1_g334370 Hydrangea macrophylla HOM05D004519 ORTHO05D006283 2.5e-50 203.8 176 59.7
MBI15_g25773_MAGBIO Magnolia biondii HOM05D004519 ORTHO05D006283 1.1e-37 161.8 98 75.5
Cpa.g.sc208.5 Carica papaya HOM05D004519 ORTHO05D006283 4.4e-34 149.8 94 72.3
Eucgr.A01818 Eucalyptus grandis HOM05D004519 ORTHO05D006283 4.4e-34 149.8 85 80.0
HanXRQChr16g0500211 Helianthus annuus HOM05D004519 ORTHO05D006283 7.5e-26 122.5 77 74.0
arahy.Tifrunner.gnm1.ann1.LG4SFI Arachis hypogaea HOM05D000755 ORTHO05D017477 1.8e-19 101.3 108 50.0
Haze_20066 Corylus avellana HOM05D004519 ORTHO05D007437 2.6e-18 97.4 104 51.9
PGSC0003DMG401014796 Solanum tuberosum HOM05D004519 ORTHO05D006283 7.5e-18 95.9 93 51.6
RcHm_v2.0_Chr5g0062811 Rosa chinensis HOM05D004519 ORTHO05D017048 1.0e-14 85.5 54 72.2
Gohir.D08G117301 Gossypium hirsutum HOM05D004519 ORTHO05D017048 1.7e-14 84.7 55 69.1
Gohir.D11G228750 Gossypium hirsutum HOM05D004519 ORTHO05D017048 1.7e-14 84.7 55 69.1
Gohir.D11G251850 Gossypium hirsutum HOM05D004519 ORTHO05D017048 1.7e-14 84.7 55 69.1
Gohir.D13G135501 Gossypium hirsutum HOM05D004519 ORTHO05D017048 5.0e-14 83.2 55 67.3
Gorai.008G116000 Gossypium raimondii HOM05D004519 ORTHO05D017048 1.9e-13 81.3 53 67.9
Actinidia01316 Actinidia chinensis HOM05D004519 ORTHO05D006283 1.0e-11 75.5 63 61.9
Actinidia29341 Actinidia chinensis HOM05D004519 ORTHO05D052920 8.3e-09 65.9 32 87.5
arahy.Tifrunner.gnm1.ann1.18EICQ Arachis hypogaea HOM05D000755 ORTHO05D017477 1.6e-07 61.6 53 60.4
COL.COLO4_16939 Corchorus olitorius HOM05D004519 ORTHO05D006283 5.9e-07 59.7 69 46.4


User provided reference genes

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