Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT01G0038 Cannabis sativa HOM05D003676 ORTHO05D004262 1.0e-186 656.8 366 100.0
QL06p032755 Quercus lobata HOM05D003676 ORTHO05D004262 8.5e-85 318.2 379 58.0
MD02G1132500 Malus domestica HOM05D003676 ORTHO05D004262 1.6e-83 313.9 376 55.3
Prupe.7G168100 Prunus persica HOM05D003676 ORTHO05D004262 4.7e-83 312.4 392 57.4
Cfa006972 Carpinus fangiana HOM05D003676 ORTHO05D004262 1.4e-82 310.8 381 60.1
CiPaw.07G058500 Carya illinoinensis HOM05D003676 ORTHO05D004262 1.8e-82 310.5 390 59.0
Cc07_g10720 Coffea canephora HOM05D003676 ORTHO05D004262 8.8e-82 308.1 382 56.5
Dinv33627 Davidia involucrata HOM05D003676 ORTHO05D004262 5.7e-81 305.4 370 54.3
RcHm_v2.0_Chr2g0099451 Rosa chinensis HOM05D003676 ORTHO05D004262 1.7e-80 303.9 380 53.2
CSS0021991 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 7.0e-79 298.5 378 55.3
CSS0022685 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 2.6e-78 296.6 378 54.8
Dinv40087 Davidia involucrata HOM05D003676 ORTHO05D004262 1.3e-77 294.3 383 52.5
Duzib187G0981 Durio zibethinus HOM05D003676 ORTHO05D004262 1.9e-76 290.4 387 56.3
Ciclev10025949m.g Citrus clementina HOM05D003676 ORTHO05D004262 9.4e-76 288.1 378 53.4
FvH4_1g11840 Fragaria vesca HOM05D003676 ORTHO05D004262 9.4e-76 288.1 395 55.9
MD15G1246000 Malus domestica HOM05D003676 ORTHO05D004262 1.6e-75 287.3 379 53.0
FAN26G1220 Fragaria x ananassa HOM05D003676 ORTHO05D004262 1.8e-74 283.9 376 53.2
Potri.005G114100 Populus trichocarpa HOM05D003676 ORTHO05D004262 8.8e-74 281.6 387 55.8
FAN23G0443 Fragaria x ananassa HOM05D003676 ORTHO05D004262 1.2e-73 281.2 376 54.0
Nn5g30150 Nelumbo nucifera HOM05D003676 ORTHO05D004262 1.2e-73 281.2 382 53.4
FAN19G1818 Fragaria x ananassa HOM05D003676 ORTHO05D004262 1.5e-73 280.8 386 52.8
Lj2A468T73 Lonicera japonica HOM05D003676 ORTHO05D004262 2.0e-73 280.4 381 52.0
Thecc.01G019000 Theobroma cacao HOM05D003676 ORTHO05D004262 3.3e-73 279.6 386 55.7
CSS0018215 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 7.5e-73 278.5 384 55.7
arahy.Tifrunner.gnm1.ann1.CCI0LY Arachis hypogaea HOM05D003676 ORTHO05D004262 1.3e-72 277.7 377 55.7
Sabra05G0093400 Salix brachista HOM05D003676 ORTHO05D004262 1.3e-72 277.7 390 51.8
arahy.Tifrunner.gnm1.ann1.3LB61T Arachis hypogaea HOM05D003676 ORTHO05D004262 1.7e-72 277.3 376 55.9
Atru.chr3.798 Acer truncatum HOM05D003676 ORTHO05D004262 1.1e-71 274.6 404 51.5
Lj4g0000664 Lotus japonicus HOM05D003676 ORTHO05D004262 1.1e-71 274.6 373 51.5
ClCG10G000750 Citrullus lanatus HOM05D003676 ORTHO05D004262 2.0e-70 270.4 381 54.9
Eucgr.I02350 Eucalyptus grandis HOM05D003676 ORTHO05D004262 2.0e-70 270.4 376 54.8
Manes.01G145700 Manihot esculenta HOM05D003676 ORTHO05D004262 1.0e-69 268.1 377 52.0
Hund16490 Selenicereus undatus HOM05D003676 ORTHO05D004262 1.0e-69 268.1 391 51.9
Nitab4.5_0003382g0020 Nicotiana tabacum HOM05D003676 ORTHO05D004262 1.7e-69 267.3 383 54.8
Solyc02g083890.4 Solanum lycopersicum HOM05D003676 ORTHO05D004262 1.7e-69 267.3 382 50.0
CsaV3_3G000800 Cucumis sativus L. HOM05D003676 ORTHO05D004262 2.2e-69 266.9 385 53.0
TAR381G0332 Trochodendron aralioides HOM05D003676 ORTHO05D004262 3.8e-69 266.2 371 53.6
Psat4g099080 Pisum sativum HOM05D003676 ORTHO05D004262 8.5e-69 265.0 381 52.2
Nitab4.5_0005660g0010 Nicotiana tabacum HOM05D003676 ORTHO05D004262 1.1e-68 264.6 374 54.5
Peaxi162Scf00083g00320 Petunia axillaris HOM05D003676 ORTHO05D004262 1.1e-68 264.6 376 52.7
Cpa.g.sc6.251 Carica papaya HOM05D003676 ORTHO05D004262 1.5e-68 264.2 391 52.7
Sopen02g028680 Solanum pennellii HOM05D003676 ORTHO05D004262 3.2e-68 263.1 378 51.6
Actinidia17444 Actinidia chinensis HOM05D003676 ORTHO05D004262 5.5e-68 262.3 387 46.8
CAN.G1671.14 Capsicum annuum HOM05D003676 ORTHO05D004262 2.1e-67 260.4 385 53.8
TPR.G30058 Trifolium pratense HOM05D003676 ORTHO05D004262 2.7e-67 260.0 376 54.0
Rhsim10G0212200 Rhododendron simsii HOM05D003676 ORTHO05D004262 3.6e-67 259.6 393 53.2
vmacro18414 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 3.6e-67 259.6 389 50.9
TAR628G0168 Trochodendron aralioides HOM05D003676 ORTHO05D004262 4.7e-67 259.2 363 53.7
Duzib264G0036 Durio zibethinus HOM05D003676 ORTHO05D004262 6.1e-67 258.8 381 52.5
Hma1.2p1_0956F.1_g241320 Hydrangea macrophylla HOM05D003676 ORTHO05D004262 6.1e-67 258.8 403 49.6
Sed0017342 Sechium edule HOM05D003676 ORTHO05D004262 1.4e-66 257.7 389 49.1
MELO3C013767.2 Cucumis melo HOM05D003676 ORTHO05D004262 2.3e-66 256.9 386 50.5
TAR376G0994 Trochodendron aralioides HOM05D003676 ORTHO05D004262 5.2e-66 255.8 360 49.7
Medtr8g075950 Medicago truncatula HOM05D003676 ORTHO05D004262 5.7e-65 252.3 378 54.0
AUR62029464 Chenopodium quinoa HOM05D003676 ORTHO05D004262 7.5e-65 251.9 366 47.8
Aa31LG1G14730 Aethionema arabicum HOM05D003676 ORTHO05D004262 9.8e-65 251.5 373 51.5
PGR119G1864 Punica granatum HOM05D003676 ORTHO05D004262 3.7e-64 249.6 396 52.3
Lalb_Chr05g0212401 Lupinus albus HOM05D003676 ORTHO05D004262 4.8e-64 249.2 375 48.5
PGSC0003DMG400003640 Solanum tuberosum HOM05D003676 ORTHO05D004262 6.3e-64 248.8 383 48.3
MBI05_g37447_MAGBIO Magnolia biondii HOM05D003676 ORTHO05D004262 7.7e-62 241.9 367 45.2
Hund14045 Selenicereus undatus HOM05D003676 ORTHO05D004262 1.7e-61 240.7 376 46.5
DCAR_016607 Daucus carota HOM05D003676 ORTHO05D004262 2.9e-61 240.0 378 53.2
Gohir.A11G175400 Gossypium hirsutum HOM05D003676 ORTHO05D004262 6.5e-61 238.8 388 47.4
Glyma.01G166300 Glycine max HOM05D003676 ORTHO05D004262 1.1e-60 238.0 381 47.8
PSO541G5658 Papaver somniferum HOM05D003676 ORTHO05D004262 2.5e-60 236.9 364 51.6
Phvul.003G262100 Phaseolus vulgaris HOM05D003676 ORTHO05D004262 4.2e-60 236.1 378 52.6
VMungo0251G0225 Vigna mungo HOM05D003676 ORTHO05D004262 5.5e-60 235.7 390 50.3
MSTRG.2714 Avicennia marina HOM05D003676 ORTHO05D004262 7.2e-60 235.3 379 49.1
FAN28G1902 Fragaria x ananassa HOM05D003676 ORTHO05D004262 9.5e-60 235.0 369 51.2
Sc07g0000980 Simmondsia chinensis HOM05D003676 ORTHO05D004262 2.8e-59 233.4 338 52.7
PSO675G7127 Papaver somniferum HOM05D003676 ORTHO05D004262 3.6e-59 233.0 366 50.5
Hma1.2p1_0258F.1_g104145 Hydrangea macrophylla HOM05D003676 ORTHO05D004262 4.0e-58 229.6 378 48.1
CARHR281500 Cardamine hirsuta HOM05D003676 ORTHO05D004262 6.8e-58 228.8 379 48.5
Manes.02G104500 Manihot esculenta HOM05D003676 ORTHO05D004262 8.8e-58 228.4 361 48.8
TWI09G1351 Tripterygium wilfordii HOM05D003676 ORTHO05D004262 8.8e-58 228.4 320 55.9
Oeu012589.1 Olea europaea HOM05D003676 ORTHO05D004262 2.6e-57 226.9 341 50.1
Oeu048461.1 Olea europaea HOM05D003676 ORTHO05D004262 5.7e-57 225.7 336 53.0
Actinidia30997 Actinidia chinensis HOM05D003676 ORTHO05D004262 7.5e-57 225.3 377 45.4
Thhalv10004614m.g Eutrema salsugineum HOM05D003676 ORTHO05D004262 7.5e-57 225.3 382 45.5
Aqoxy6G02292 Aquilegia oxysepala HOM05D003676 ORTHO05D004262 1.3e-56 224.6 374 45.7
Glyma.16G128800 Glycine max HOM05D003676 ORTHO05D004262 1.3e-56 224.6 385 47.8
AT5G66230 Arabidopsis thaliana HOM05D003676 ORTHO05D003783 2.2e-56 223.8 370 50.8
Gohir.D11G182900 Gossypium hirsutum HOM05D003676 ORTHO05D004262 3.7e-56 223.0 379 46.7
Nn1g05889 Nelumbo nucifera HOM05D003676 ORTHO05D004262 3.7e-56 223.0 366 47.0
AUR62003369 Chenopodium quinoa HOM05D003676 ORTHO05D004262 1.4e-55 221.1 372 44.6
Gorai.008G063100 Gossypium raimondii HOM05D003676 ORTHO05D004262 1.4e-55 221.1 371 51.8
A09p10110 Brassica napus HOM05D003676 ORTHO05D004262 2.4e-55 220.3 376 49.2
Glyma.02G048700 Glycine max HOM05D003676 ORTHO05D004262 4.1e-55 219.5 384 48.7
Glyma.11G077200 Glycine max HOM05D003676 ORTHO05D004262 7.0e-55 218.8 375 50.7
Oeu063192.2 Olea europaea HOM05D003676 ORTHO05D004262 7.0e-55 218.8 349 45.8
Gohir.D12G060000 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.6e-54 217.6 371 52.0
Ca_22374_v3 Cicer arietinum L. HOM05D003676 ORTHO05D004262 2.0e-54 217.2 379 43.0
Rhsim08G0033700 Rhododendron simsii HOM05D003676 ORTHO05D004262 2.0e-54 217.2 398 45.5
Ah.03g148760 Amaranthus hybridus HOM05D003676 ORTHO05D004262 2.7e-54 216.9 339 51.0
COL.COLO4_21910 Corchorus olitorius HOM05D003676 ORTHO05D004262 3.5e-54 216.5 384 46.6
Gorai.007G194900 Gossypium raimondii HOM05D003676 ORTHO05D004262 3.5e-54 216.5 379 47.2
BraA09t36654Z Brassica rapa HOM05D003676 ORTHO05D004262 7.8e-54 215.3 377 48.8
C09p11980 Brassica napus HOM05D003676 ORTHO05D004262 1.7e-53 214.2 376 49.2
BolC9t54086H Brassica oleracea HOM05D003676 ORTHO05D004262 2.9e-53 213.4 380 49.5
SalBow3G1193 Salvia bowleyana HOM05D003676 ORTHO05D004262 3.3e-52 209.9 335 48.4
Gohir.A12G059600 Gossypium hirsutum HOM05D003676 ORTHO05D004262 4.3e-52 209.5 375 50.4
MBI05_g30743_MAGBIO Magnolia biondii HOM05D003676 ORTHO05D004262 1.6e-51 207.6 363 41.0
GSVIVG01018782001 Vitis vinifera HOM05D003676 ORTHO05D004262 8.0e-51 205.3 249 55.0
Carub.0008s2827 Capsella rubella HOM05D003676 ORTHO05D004262 1.0e-50 204.9 392 43.9
THA.LOC104819178 Tarenaya hassleriana HOM05D003676 ORTHO05D004262 3.0e-50 203.4 392 42.1
Gohir.D11G183000 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.2e-49 201.4 319 47.6
Phvul.002G108800 Phaseolus vulgaris HOM05D003676 ORTHO05D004262 1.2e-49 201.4 349 43.0
TWI53G0168 Tripterygium wilfordii HOM05D003676 ORTHO05D004262 2.6e-49 200.3 394 45.9
Actinidia22976 Actinidia chinensis HOM05D003676 ORTHO05D004262 9.8e-49 198.4 293 49.5
Gorai.007G195000 Gossypium raimondii HOM05D003676 ORTHO05D004262 1.7e-48 197.6 319 46.7
SGA_v2.0_scaffold78G25382 Striga asiatica HOM05D003676 ORTHO05D004262 2.9e-48 196.8 364 42.0
Sp2g30470 Schrenkiella parvula HOM05D003676 ORTHO05D004262 3.7e-48 196.4 375 46.7
unitig_736.g22721 Utricularia gibba HOM05D003676 ORTHO05D004262 3.7e-48 196.4 347 47.8
Haze_03763 Corylus avellana HOM05D003676 ORTHO05D004262 4.1e-47 193.0 187 64.7
Ca_25824_v3 Cicer arietinum L. HOM05D003676 ORTHO05D004262 2.7e-46 190.3 375 45.6
Gohir.D03G009400 Gossypium hirsutum HOM05D003676 ORTHO05D004262 7.8e-46 188.7 448 39.3
Sc16g0002190 Simmondsia chinensis HOM05D003676 ORTHO05D004262 1.7e-45 187.6 350 40.3
Gohir.A02G170700 Gossypium hirsutum HOM05D003676 ORTHO05D004262 2.3e-45 187.2 448 40.0
Lj4A218T52 Lonicera japonica HOM05D003676 ORTHO05D004262 8.6e-45 185.3 381 41.2
ECA232G1625 Erigeron canadensis HOM05D003676 ORTHO05D004262 1.9e-44 184.1 382 38.2
TPR.G18183 Trifolium pratense HOM05D003676 ORTHO05D004262 1.2e-43 181.4 372 47.0
HPP92_020902 Vanilla planifolia HOM05D003676 ORTHO05D004262 1.2e-43 181.4 367 43.9
HanXRQChr09g0256601 Helianthus annuus HOM05D003676 ORTHO05D004262 1.6e-43 181.0 329 43.5
Medtr5g022010 Medicago truncatula HOM05D003676 ORTHO05D004262 2.6e-41 173.7 362 42.3
Gorai.003G009600 Gossypium raimondii HOM05D003676 ORTHO05D004262 1.3e-40 171.4 377 42.2
Potri.007G057800 Populus trichocarpa HOM05D003676 ORTHO05D004262 1.7e-40 171.0 387 45.2
AL8G45300 Arabidopsis lyrata HOM05D003676 ORTHO05D004262 7.0e-39 165.6 234 51.7
AL5G31630 Arabidopsis lyrata HOM05D003676 ORTHO05D004262 1.2e-38 164.9 374 38.0
Nn1g05888 Nelumbo nucifera HOM05D003676 ORTHO05D004262 1.2e-38 164.9 369 37.7
Lsat_1_v5_gn_4_146360 Lactuca sativa HOM05D003676 ORTHO05D004262 3.0e-37 160.2 330 38.5
CDE05G2608 Ceratophyllum demersum HOM05D003676 ORTHO05D004262 1.1e-36 158.3 354 38.4
Os10g0577400 Oryza sativa ssp. japonica HOM05D003676 ORTHO05D004262 1.9e-36 157.5 389 40.1
Lalb_Chr09g0321731 Lupinus albus HOM05D003676 ORTHO05D004262 2.1e-35 154.1 371 38.8
Psat2g154560 Pisum sativum HOM05D003676 ORTHO05D004262 6.2e-35 152.5 356 42.4
Lsat_1_v5_gn_3_74521 Lactuca sativa HOM05D003676 ORTHO05D004262 1.1e-34 151.8 329 38.3
CDE05G0776 Ceratophyllum demersum HOM05D003676 ORTHO05D004262 1.8e-34 151.0 263 44.5
Zm00001eb224920 Zea mays HOM05D003676 ORTHO05D004262 2.3e-34 150.6 395 40.0
Sp5g10990 Schrenkiella parvula HOM05D003676 ORTHO05D004262 4.0e-34 149.8 381 36.7
DCAR_025998 Daucus carota HOM05D003676 ORTHO05D004262 6.8e-34 149.1 249 45.4
HanXRQChr15g0487251 Helianthus annuus HOM05D003676 ORTHO05D004262 8.9e-34 148.7 347 36.3
unitig_899.g14713 Utricularia gibba HOM05D003676 ORTHO05D004262 1.5e-33 147.9 315 38.4
SEGI_09532 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 4.4e-33 146.4 389 36.0
AT3G51230 Arabidopsis thaliana HOM05D003676 ORTHO05D004262 2.9e-32 143.7 211 49.3
SHI32179 Sapria himalayana HOM05D003676 ORTHO05D004262 2.9e-32 143.7 342 35.1
SEGI_21114 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 4.9e-32 142.9 345 37.4
ATR0149G006 Amborella trichopoda HOM05D003676 ORTHO05D004262 1.1e-31 141.7 371 41.2
ECA246G1385 Erigeron canadensis HOM05D003676 ORTHO05D004262 9.2e-31 138.7 281 39.5
Zm00001eb024930 Zea mays HOM05D003676 ORTHO05D004262 1.2e-30 138.3 376 39.4
BcaNung04494 Brassica carinata HOM05D003676 ORTHO05D004262 3.0e-29 133.7 281 43.8
Migut.H01153 Erythranthe guttata HOM05D003676 ORTHO05D004262 1.9e-28 131.0 342 41.2
Nitab4.5_0000188g0110 Nicotiana tabacum HOM05D003676 ORTHO05D004262 9.5e-28 128.6 204 48.5
A01p23560 Brassica napus HOM05D003676 ORTHO05D004262 4.7e-27 126.3 215 44.7
BraA01t02262Z Brassica rapa HOM05D003676 ORTHO05D004262 4.7e-27 126.3 215 44.7
Carub.0005s1760 Capsella rubella HOM05D003676 ORTHO05D004262 4.7e-27 126.3 238 46.2
Atru.chr1.3640 Acer truncatum HOM05D003676 ORTHO05D004262 1.4e-26 124.8 134 66.4
BcaNung00393 Brassica carinata HOM05D003676 ORTHO05D004262 2.3e-26 124.0 333 33.0
CARHR160810 Cardamine hirsuta HOM05D003676 ORTHO05D004262 4.0e-26 123.2 216 44.9
BcaC09g50089 Brassica carinata HOM05D003676 ORTHO05D004262 2.9e-24 117.1 246 40.7
C01p29220 Brassica napus HOM05D003676 ORTHO05D004262 2.9e-24 117.1 246 40.7
PGSC0003DMG400023891 Solanum tuberosum HOM05D003676 ORTHO05D004262 8.4e-24 115.5 290 36.2
Nitab4.5_0002337g0030 Nicotiana tabacum HOM05D003676 ORTHO05D004262 1.2e-22 111.7 208 43.3
RcHm_v2.0_Chr6g0272671 Rosa chinensis HOM05D003676 ORTHO05D004262 6.0e-22 109.4 131 53.4
Solyc02g062170.3 Solanum lycopersicum HOM05D003676 ORTHO05D004262 3.9e-21 106.7 288 34.7
Sopen02g013140 Solanum pennellii HOM05D003676 ORTHO05D004262 5.1e-21 106.3 289 36.0
Gorai.010G060700 Gossypium raimondii HOM05D003676 ORTHO05D004262 1.5e-20 104.8 122 59.0
HanXRQChr16g0531461 Helianthus annuus HOM05D003676 ORTHO05D004262 2.4e-18 97.4 242 35.5
Atru.chr1.3647 Acer truncatum HOM05D003676 ORTHO05D004262 4.0e-18 96.7 340 34.1
vmacro23249 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 5.8e-17 92.8 223 38.1
vmacro23473 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 5.8e-17 92.8 223 38.1
vmacro22131 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 3.2e-15 87.0 373 34.6
SEGI_24904 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 1.2e-14 85.1 306 29.7
SMO340G0107 Selaginella moellendorffii HOM05D003676 ORTHO05D004262 6.9e-10 69.3 333 29.7
TAR629G3197 Trochodendron aralioides HOM05D003676 ORTHO05D004262 2.0e-09 67.8 115 41.7
Gohir.D09G239350 Gossypium hirsutum HOM05D003676 ORTHO05D004262 7.6e-09 65.9 58 62.1
Gorai.006G262100 Gossypium raimondii HOM05D003676 ORTHO05D004262 1.7e-08 64.7 58 60.3
AagrBONN_evm.TU.Sc2ySwM_362.2718 Anthoceros agrestis HOM05D003676 ORTHO05D004262 9.3e-07 58.9 156 36.5
Mapoly0004s0127 Marchantia polymorpha HOM05D003676 ORTHO05D030105 3.5e-06 57.0 433 28.4
Pp3c2_17070 Physcomitrium patens HOM05D032375 ORTHO05D030105 4.6e-06 56.6 83 43.4
PSO700G0244 Papaver somniferum HOM05D065651 ORTHO05D004262 7.9e-06 55.8 147 34.0


User provided reference genes

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