Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G999.9 Capsicum annuum HOM05D004983 ORTHO05D005847 1.7e-134 482.6 244 100.0
PGSC0003DMG400024570 Solanum tuberosum HOM05D004983 ORTHO05D005847 3.0e-118 428.7 244 88.1
Sopen03g032630 Solanum pennellii HOM05D004983 ORTHO05D005847 6.6e-118 427.6 244 88.9
Solyc03g113590.3 Solanum lycopersicum HOM05D004983 ORTHO05D005847 8.7e-118 427.2 244 88.5
Nitab4.5_0008162g0040 Nicotiana tabacum HOM05D004983 ORTHO05D005847 9.6e-109 397.1 245 82.0
Nitab4.5_0000026g0320 Nicotiana tabacum HOM05D004983 ORTHO05D005847 1.3e-108 396.7 244 83.2
Peaxi162Scf00017g02122 Petunia axillaris HOM05D004983 ORTHO05D005847 1.7e-97 359.8 244 78.7
Lsat_1_v5_gn_1_11380 Lactuca sativa HOM05D004983 ORTHO05D005847 1.3e-94 350.1 243 69.5
Peaxi162Scf00496g00013 Petunia axillaris HOM05D004983 ORTHO05D005847 7.4e-93 344.4 225 78.2
Oeu022186.1 Olea europaea HOM05D004983 ORTHO05D005847 9.6e-93 344.0 227 74.9
Hma1.2p1_0572F.1_g181120 Hydrangea macrophylla HOM05D004983 ORTHO05D005847 1.4e-91 340.1 234 74.4
Dinv13111 Davidia involucrata HOM05D004983 ORTHO05D005847 5.3e-91 338.2 239 72.0
Cc04_g16050 Coffea canephora HOM05D004983 ORTHO05D005847 1.5e-90 336.7 232 71.1
MD06G1184000 Malus domestica HOM05D004983 ORTHO05D005847 4.5e-90 335.1 227 71.8
HanXRQChr02g0045351 Helianthus annuus HOM05D004983 ORTHO05D005847 3.8e-89 332.0 225 72.4
Prupe.5G182700 Prunus persica HOM05D004983 ORTHO05D005847 6.5e-89 331.3 231 71.9
Dinv19894 Davidia involucrata HOM05D004983 ORTHO05D005847 8.4e-89 330.9 236 70.3
Eucgr.B00384 Eucalyptus grandis HOM05D004983 ORTHO05D005847 1.4e-88 330.1 233 71.7
C09p64060 Brassica napus HOM05D004983 ORTHO05D005847 5.5e-88 328.2 238 66.4
SGA_v2.0_scaffold25G10860 Striga asiatica HOM05D004983 ORTHO05D005847 7.1e-88 327.8 233 70.4
Potri.012G072800 Populus trichocarpa HOM05D004983 ORTHO05D005847 9.3e-88 327.4 231 70.6
AT5G13050 Arabidopsis thaliana HOM05D004983 ORTHO05D005847 1.2e-87 327.0 231 68.4
A10p25150 Brassica napus HOM05D004983 ORTHO05D005847 1.6e-87 326.6 238 66.4
Carub.0006s1121 Capsella rubella HOM05D004983 ORTHO05D005847 1.6e-87 326.6 226 69.9
BraA10t44577Z Brassica rapa HOM05D004983 ORTHO05D005847 2.1e-87 326.2 238 66.4
Migut.I00071 Erythranthe guttata HOM05D004983 ORTHO05D005847 2.1e-87 326.2 228 70.6
CANSAT80G1912 Cannabis sativa HOM05D004983 ORTHO05D005847 2.7e-87 325.9 227 69.6
RcHm_v2.0_Chr7g0180081 Rosa chinensis HOM05D004983 ORTHO05D005847 2.7e-87 325.9 226 69.9
Medtr0168s0080 Medicago truncatula HOM05D004983 ORTHO05D005847 3.5e-87 325.5 225 71.1
TAR374G1152 Trochodendron aralioides HOM05D000005 ORTHO05D000012 4.6e-87 325.1 228 69.7
BolC9t59243H Brassica oleracea HOM05D004983 ORTHO05D005847 7.9e-87 324.3 238 65.5
Ciclev10021875m.g Citrus clementina HOM05D004983 ORTHO05D005847 7.9e-87 324.3 243 68.3
Haze_07411 Corylus avellana HOM05D004983 ORTHO05D005847 7.9e-87 324.3 235 67.7
GSVIVG01008095001 Vitis vinifera HOM05D004983 ORTHO05D005847 1.3e-86 323.6 238 66.8
COL.COLO4_20718 Corchorus olitorius HOM05D004983 ORTHO05D005847 1.8e-86 323.2 242 67.8
FvH4_5g15990 Fragaria vesca HOM05D004983 ORTHO05D005847 2.3e-86 322.8 226 69.9
vmacro19336 Vaccinium macrocarpon HOM05D004983 ORTHO05D005847 2.3e-86 322.8 276 60.5
AL6G23630 Arabidopsis lyrata HOM05D004983 ORTHO05D005847 3.9e-86 322.0 231 67.5
Rhsim08G0163200 Rhododendron simsii HOM05D004983 ORTHO05D005847 3.9e-86 322.0 296 58.1
Manes.06G098600 Manihot esculenta HOM05D004983 ORTHO05D005847 5.1e-86 321.6 235 67.7
Thecc.K0001100 Theobroma cacao HOM05D004983 ORTHO05D005847 5.1e-86 321.6 242 67.8
TPR.G37260 Trifolium pratense HOM05D004983 ORTHO05D005847 5.1e-86 321.6 231 70.6
FAN18G0171 Fragaria x ananassa HOM05D004983 ORTHO05D005847 8.7e-86 320.9 226 69.5
Actinidia04943 Actinidia chinensis HOM05D004983 ORTHO05D005847 1.1e-85 320.5 222 72.1
CsaV3_1G001940 Cucumis sativus L. HOM05D004983 ORTHO05D005847 1.1e-85 320.5 225 70.2
Gohir.D10G187500 Gossypium hirsutum HOM05D004983 ORTHO05D005847 1.5e-85 320.1 234 67.5
QL10p014085 Quercus lobata HOM05D004983 ORTHO05D005847 1.5e-85 320.1 235 67.7
AUR62008315 Chenopodium quinoa HOM05D004983 ORTHO05D005847 2.5e-85 319.3 230 67.8
FAN13G0935 Fragaria x ananassa HOM05D004983 ORTHO05D005847 3.3e-85 318.9 226 69.0
CARHR200420 Cardamine hirsuta HOM05D004983 ORTHO05D005847 7.4e-85 317.8 239 64.9
AUR62021780 Chenopodium quinoa HOM05D004983 ORTHO05D005847 7.4e-85 317.8 230 67.4
FAN04G0333 Fragaria x ananassa HOM05D004983 ORTHO05D005847 9.7e-85 317.4 226 68.6
ECA247G1770 Erigeron canadensis HOM05D004983 ORTHO05D005847 1.3e-84 317.0 272 61.0
Atru.chr9.2363 Acer truncatum HOM05D004983 ORTHO05D005847 1.6e-84 316.6 227 69.2
DCAR_016523 Daucus carota HOM05D004983 ORTHO05D005847 2.2e-84 316.2 246 65.9
CiPaw.12G021900 Carya illinoinensis HOM05D004983 ORTHO05D005847 2.8e-84 315.8 235 66.8
Thhalv10014312m.g Eutrema salsugineum HOM05D004983 ORTHO05D005847 4.8e-84 315.1 225 65.3
VMungo1309G2496 Vigna mungo HOM05D004983 ORTHO05D005847 4.8e-84 315.1 227 69.6
Lalb_Chr08g0236081 Lupinus albus HOM05D004983 ORTHO05D005847 6.3e-84 314.7 224 68.3
Sabra12G0052000 Salix brachista HOM05D004983 ORTHO05D005847 1.4e-83 313.5 232 67.2
Duzib205G0093 Durio zibethinus HOM05D004983 ORTHO05D005847 1.8e-83 313.2 233 67.8
BolC2t06531H Brassica oleracea HOM05D004983 ORTHO05D005847 6.9e-83 311.2 225 66.7
PGR044G0258 Punica granatum HOM05D004983 ORTHO05D005847 9.0e-83 310.8 238 66.4
Sp6g30930 Schrenkiella parvula HOM05D004983 ORTHO05D005847 9.0e-83 310.8 239 61.9
BcaNung01856 Brassica carinata HOM05D001227 ORTHO05D001082 1.2e-82 310.5 225 66.7
C02p05860 Brassica napus HOM05D001227 ORTHO05D001082 1.2e-82 310.5 225 66.7
Aa31LG3G14620 Aethionema arabicum HOM05D004983 ORTHO05D005847 2.6e-82 309.3 239 63.6
A02p01650 Brassica napus HOM05D001227 ORTHO05D001082 4.5e-82 308.5 232 65.5
Glyma.06G188000 Glycine max HOM05D004983 ORTHO05D005847 7.6e-82 307.8 224 67.9
CSS0013980 Camellia sinensis var. sinensis HOM05D004983 ORTHO05D005847 1.7e-81 306.6 236 64.0
PSO591G0429 Papaver somniferum HOM05D004983 ORTHO05D005847 2.2e-81 306.2 229 66.8
EL10Ac5g10876 Beta vulgaris HOM05D004983 ORTHO05D005847 2.9e-81 305.8 227 67.0
Hund04599 Selenicereus undatus HOM05D004983 ORTHO05D005847 2.9e-81 305.8 253 62.5
BraA02t05144Z Brassica rapa HOM05D001227 ORTHO05D001082 3.8e-81 305.4 232 65.1
Aqoxy3G00847 Aquilegia oxysepala HOM05D004983 ORTHO05D005847 5.0e-81 305.1 233 66.5
Glyma.04G177000 Glycine max HOM05D004983 ORTHO05D005847 1.4e-80 303.5 224 67.9
QL03p067716 Quercus lobata HOM05D004983 ORTHO05D005847 1.4e-80 303.5 225 66.2
TPR.G19166 Trifolium pratense HOM05D004983 ORTHO05D005847 3.2e-80 302.4 209 71.8
Sc12g0005910 Simmondsia chinensis HOM05D004983 ORTHO05D005847 9.4e-80 300.8 228 64.0
QL03p067725 Quercus lobata HOM05D004983 ORTHO05D005847 1.2e-79 300.4 225 64.9
Ciclev10032272m.g Citrus clementina HOM05D004983 ORTHO05D005847 1.6e-79 300.1 228 62.7
arahy.Tifrunner.gnm1.ann1.TQ2Z41 Arachis hypogaea HOM05D004983 ORTHO05D005847 2.1e-79 299.7 231 65.4
arahy.Tifrunner.gnm1.ann1.GD66SW Arachis hypogaea HOM05D004983 ORTHO05D005847 3.6e-79 298.9 230 64.8
Phvul.009G183500 Phaseolus vulgaris HOM05D004983 ORTHO05D005847 4.6e-79 298.5 224 67.0
TWI75G1117 Tripterygium wilfordii HOM05D004983 ORTHO05D005847 1.4e-78 297.0 239 60.7
Prupe.1G263300 Prunus persica HOM05D004983 ORTHO05D005847 1.9e-77 293.1 227 62.1
ATR0665G657 Amborella trichopoda HOM05D004983 ORTHO05D005847 2.5e-77 292.7 239 62.3
Ah.02g112940 Amaranthus hybridus HOM05D004983 ORTHO05D005847 3.3e-77 292.4 233 64.4
Gohir.A12G051800 Gossypium hirsutum HOM05D004983 ORTHO05D005847 4.3e-77 292.0 229 63.8
Gohir.D12G050100 Gossypium hirsutum HOM05D004983 ORTHO05D005847 4.3e-77 292.0 244 59.8
Haze_12108 Corylus avellana HOM05D004983 ORTHO05D005847 1.3e-76 290.4 231 60.2
Gorai.008G053300 Gossypium raimondii HOM05D004983 ORTHO05D005847 1.7e-76 290.0 244 59.8
CiPaw.05G143400 Carya illinoinensis HOM05D004983 ORTHO05D005847 2.2e-76 289.7 229 61.6
Nitab4.5_0000642g0190 Nicotiana tabacum HOM05D004983 ORTHO05D005847 3.7e-76 288.9 241 67.2
FvH4_4g35410 Fragaria vesca HOM05D004983 ORTHO05D005847 1.4e-75 287.0 236 59.7
Ah.11g048970 Amaranthus hybridus HOM05D004983 ORTHO05D005847 1.8e-75 286.6 228 63.6
HPP92_026476 Vanilla planifolia HOM05D004983 ORTHO05D005847 3.1e-75 285.8 229 62.4
Nn4g22978 Nelumbo nucifera HOM05D004983 ORTHO05D005847 9.1e-75 284.3 229 63.8
Lj1g0016910 Lotus japonicus HOM05D004983 ORTHO05D005847 1.5e-74 283.5 205 68.3
RcHm_v2.0_Chr4g0445021 Rosa chinensis HOM05D004983 ORTHO05D005847 2.6e-74 282.7 231 60.6
arahy.Tifrunner.gnm1.ann1.G2IRY3 Arachis hypogaea HOM05D004983 ORTHO05D005847 3.4e-74 282.3 233 58.8
arahy.Tifrunner.gnm1.ann1.N4VW2L Arachis hypogaea HOM05D004983 ORTHO05D005847 7.7e-74 281.2 242 57.4
Ah.02g112900 Amaranthus hybridus HOM05D004983 ORTHO05D005847 1.0e-73 280.8 233 61.8
Thecc.02G237100 Theobroma cacao HOM05D004983 ORTHO05D005847 1.0e-73 280.8 231 61.5
HPP92_014218 Vanilla planifolia HOM05D004983 ORTHO05D005847 1.3e-73 280.4 229 61.6
CDE07G0592 Ceratophyllum demersum HOM05D004983 ORTHO05D005847 2.9e-73 279.3 231 59.7
Atru.chr11.1914 Acer truncatum HOM05D004983 ORTHO05D005847 5.0e-73 278.5 208 63.5
Os07g0578600 Oryza sativa ssp. japonica HOM05D004983 ORTHO05D005847 1.1e-72 277.3 226 60.2
Zm00001eb107660 Zea mays HOM05D004983 ORTHO05D005847 4.2e-72 275.4 240 59.2
FAN07G1154 Fragaria x ananassa HOM05D004983 ORTHO05D005847 5.5e-72 275.0 258 54.3
unitig_27.g25109 Utricularia gibba HOM05D000870 ORTHO05D005847 5.5e-72 275.0 195 67.2
BcaNung01178 Brassica carinata HOM05D004983 ORTHO05D005847 1.8e-70 270.0 268 52.6
MELO3C017137.2 Cucumis melo HOM05D004983 ORTHO05D005847 6.7e-70 268.1 228 62.3
Gorai.011G210300 Gossypium raimondii HOM05D004983 ORTHO05D005847 4.4e-69 265.4 234 58.5
AUR62021779 Chenopodium quinoa HOM05D004983 ORTHO05D005847 7.4e-69 264.6 219 61.6
FAN22G0524 Fragaria x ananassa HOM05D004983 ORTHO05D005847 4.2e-64 248.8 236 53.8
FAN12G3769 Fragaria x ananassa HOM05D004983 ORTHO05D005847 1.0e-62 244.2 275 48.0
MD16G1082800 Malus domestica HOM05D004983 ORTHO05D005847 1.4e-62 243.8 231 55.8
Mapoly0019s0150 Marchantia polymorpha HOM05D004983 ORTHO05D005847 1.4e-62 243.8 226 55.8
CSS0025366 Camellia sinensis var. sinensis HOM05D004983 ORTHO05D005847 1.8e-62 243.4 149 76.5
AagrBONN_evm.TU.Sc2ySwM_362.273 Anthoceros agrestis HOM05D004983 ORTHO05D005847 3.9e-62 242.3 228 53.9
Nitab4.5_0009486g0020 Nicotiana tabacum HOM05D004983 ORTHO05D005847 1.5e-61 240.4 160 78.1
Lj9A456T34 Lonicera japonica HOM05D004983 ORTHO05D005847 4.8e-60 235.3 151 76.2
SMO271G0141 Selaginella moellendorffii HOM05D004983 ORTHO05D005847 2.4e-59 233.0 226 54.0
Nitab4.5_0002376g0010 Nicotiana tabacum HOM05D004983 ORTHO05D005847 5.3e-59 231.9 277 44.4
SalBow5G1630 Salvia bowleyana HOM05D004983 ORTHO05D005847 2.6e-58 229.6 237 54.0
Cpa.g.sc203.7 Carica papaya HOM05D004983 ORTHO05D005847 3.5e-58 229.2 225 53.8
Duzib251G0645 Durio zibethinus HOM05D004983 ORTHO05D005847 3.5e-58 229.2 182 62.6
Psat5g181720 Pisum sativum HOM05D004983 ORTHO05D005847 2.2e-57 226.5 141 78.0
Nn4g24106 Nelumbo nucifera HOM05D004983 ORTHO05D005847 3.8e-57 225.7 230 52.6
Sed0011699 Sechium edule HOM05D004983 ORTHO05D005847 1.5e-56 223.8 176 63.1
Gohir.A10G180700 Gossypium hirsutum HOM05D004983 ORTHO05D005847 3.2e-56 222.6 145 71.7
Dinv31146 Davidia involucrata HOM05D004983 ORTHO05D005847 2.1e-55 219.9 148 69.6
Atru.chr11.1910 Acer truncatum HOM05D004983 ORTHO05D005847 5.2e-54 215.3 150 68.7
Nitab4.5_0000710g0080 Nicotiana tabacum HOM05D004983 ORTHO05D005847 9.4e-48 194.5 162 57.4
CBR_g34194 Chara braunii HOM05D004983 ORTHO05D005847 1.6e-42 177.2 234 41.0
Pp3c12_22470 Physcomitrium patens HOM05D004983 ORTHO05D005847 1.5e-40 170.6 167 52.1
Pp3c3_32060 Physcomitrium patens HOM05D004983 ORTHO05D005847 3.3e-40 169.5 161 52.2
SEGI_36548 Sequoiadendron giganteum HOM05D004983 ORTHO05D005847 5.5e-40 168.7 144 59.7
Hma1.2p1_4120F.1_g338320 Hydrangea macrophylla HOM05D004983 ORTHO05D005847 2.0e-37 160.2 97 78.4
GSVIVG01020126001 Vitis vinifera HOM05D004983 ORTHO05D005847 4.3e-32 142.5 129 57.4
Cre09.g403293 Chlamydomonas reinhardtii HOM05D004983 ORTHO05D005847 2.3e-30 136.7 210 39.0
FAN17G3002 Fragaria x ananassa HOM05D004983 ORTHO05D005847 9.2e-27 124.8 117 54.7
SEGI_02343 Sequoiadendron giganteum HOM05D004983 ORTHO05D005847 5.0e-25 119.0 92 64.1
MCO01G728 Micromonas commoda HOM05D004983 ORTHO05D005847 1.9e-24 117.1 243 34.2
Psat0s864g0040 Pisum sativum HOM05D004983 ORTHO05D005847 3.1e-22 109.8 82 65.9
PRCOL_00002663 Prasinoderma coloniale HOM05D004983 ORTHO05D005847 2.6e-21 106.7 239 33.1
Atru.chr11.1911 Acer truncatum HOM05D004983 ORTHO05D005847 2.9e-20 103.2 73 65.8
ClCG06G016570 Citrullus lanatus HOM05D004983 ORTHO05D005847 1.1e-19 101.3 77 63.6
Nitab4.5_0000710g0100 Nicotiana tabacum HOM05D004983 ORTHO05D005847 1.0e-09 68.2 68 44.1
Ca_28882_v3 Cicer arietinum L. HOM05D004983 ORTHO05D005847 1.6e-07 60.8 222 24.8
Cfa021669 Carpinus fangiana HOM05D004983 ORTHO05D005847 3.1e-06 56.6 174 27.6


User provided reference genes

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